Single-shot line scan imaging using stimulated echoes

A new high-speed MRI method is described for single-shot line scan imaging (LSI) based on stimulated echoes (STE). To allow for multislice imaging, the technique comprises a series of slice-selective preparation pulses (each corresponding to the first RF pulse of a STE sequence), a slab-selective refocusing pulse (second RF pulse), and multiple line-selective read pulses (third RF pulses). An alternative version employs packages of two slice-selective pulses followed by multiple line-selective read pulses. Experimental applications deal with human brain imaging on a clinical MRI system at 2.0 T. The technique offers user-selectable trade-offs between volume coverage (1-15 sections) and in-plane spatial resolution (1-5 mm linear pixel dimension) within total acquisition times of less than 500 ms. Although LSI yields a lower signal-to-noise ratio than Fourier imaging, single-shot LSI with STEs is free from resonance offset effects (e.g., magnetic field inhomogeneities and susceptibility differences) that are typical for echo-planar imaging. Moreover, the technique exhibits considerable robustness against motion and provides access to arbitrary fields-of-view, i.e., localized imaging of inner volumes without aliasing artifacts due to phase wrapping.     

A practical approach to in vivo high-resolution diffusion tensor imaging of rhesus monkeys on a 3-T human scanner

The nonhuman primate brain study provides important supplemental means for human brain exploration since the two species share close anatomical and functional similarities. MR diffusion tensor imaging (DTI) in human brain has revealed exquisite details of brain structures especially in the brain white matter. However, most previous monkey brain DTI results lack the spatial resolution in comparison to the conventional tracing and postmortem imaging methods, especially when it is acquired in commonly available human MRI scanners of field strength of 3 T or lower. To meet the increasing demands for nonhuman primate DTI studies, we proposed an in vivo high-resolution monkey DTI acquisition protocol that is practically feasible and combined it with an improved postprocessing procedure for a 3-T human scanner. The acquisition protocol, susceptibility distortion correction method with phase reversal acquisition, and postprocessing steps were proved to be effective in our study of rhesus monkeys. Results from diffusion tensor estimations and fiber tractography at 1 x 1 x 1 mm(3) resolution were found to be comparable to previous ex vivo DTI studies with much longer acquisition times. Effects of image resolution were evaluated and it was confirmed that the partial volume effect due to the larger voxel size in low-resolution data biased the diffusion tensor estimation and produced erroneous fiber tractography. Our results suggest that in vivo high-resolution monkey brain DTI can be achieved within practical time, which allows accurate diffusion tensor estimation and fiber tractography in monkey brains, so that the complex anatomical structures within many small but important anatomic structures can be delineated.     

Quantitative evaluation of optimal imaging parameters for single-cell detection in MRI using simulation

Super-paramagnetic iron oxide (SPIO) nanoparticles are actively investigated to enhance disease detection through molecular imaging using magnetic resonance imaging (MRI). Detection of the cells labeled by SPIO depends on the MRI protocols and pulse sequence parameters that can be optimized. To evaluate the sensitivity and specificity of the image acquisition methods and to obtain optimal imaging parameters for single-cell detection, we further developed an MRI simulator. The simulator models an object (tissue) at a microscopic level to evaluate effects of spatial distribution and concentration of nanoparticles on the resulting image. In this study, the simulator was used to evaluate and compare imaging of the labeled cells by the gradient-echo (GE), true-FISP [fast imaging employing steady-state acquisition (FIESTA)] and echo-planar imaging (EPI) pulse sequences. Effects of the imaging and object parameters, such as field strength, imaging protocol and pulse sequence parameters, imaging resolution, cell iron load, position of SPIO within the voxel and cell division within the voxel, were investigated in the work. The results suggest that true-FISP has the highest sensitivity for single-cell detection by MRI.     

低场MRI系统中线扫描扩散张量成像方法的研究

磁共振扩散张量成像(DTI)是在扩散加权成像(DWI)基础上发展起来的一种新型技术,可以无创伤显示脑白质纤维,诊断脑白质病变. 但是由于各种原因,DTI一般只在超导高场磁共振成像(MRI)仪器上进行,这就限制了这一重要诊断手段临床应用的广泛性. 本文在低场磁共振成像系统上应用线扫描实现了扩散张量成像,并测量了健康志愿者大脑内主要解剖结构的表观扩散系数(ADC)和各项异性分数(FA),得到的数据与高场仪器上的相关数据比较是吻合的. 因此临床上使用在低场强上得到的DTI图像评价脑白质是可行的,而且通常在临床上这也是足够的.     

Single-shot fast spin-echo diffusion tensor imaging of the brain and spine with head and phased array coils at 1.5 T and 3.0 T

In this study, we investigated the use of a single-shot fast spin-echo-based sequence to perform diffusion tensor imaging (DTI) with improved anatomic fidelity through the entire brain and the cervical spine. Traditionally, diffusion tensor images have been acquired by single-shot echo-planar imaging (EPI) methods in which large distortions result from magnetic susceptibility effects, especially near air-tissue interfaces. These distortions can be problematic, especially in anterior and inferior portions of the brain, and they also can severely limit applications in the spine. At higher magnetic fields these magnetic susceptibility artifacts are increased. The single-shot fast spin-echo (SSFSE) method used in this study utilizes radiofrequency rephasing in the transverse plane and thus provides diffusion images with negligible distortion even at 3 Tesla. In addition, the SSFSE sequence does not require multiple fast-receivers, which are not available on many magnetic resonance (MR) systems. Phased array coils were used to increase the signal-to-noise ratio of the images, offering a major inherent advantage in diffusion tensor imaging of the spine and brain. The mean diffusion measurements obtained with the SSFSE acquisition were not statistically different (p > 0.05) from EPI-based acquisitions. Compared to routine T(2)-weighted MR images, the DTI-EPI sequence showed up to 20% in elongation of the brain in the anterior-posterior direction on a sagittal image due to magnetic susceptibility distortions, whereas in the DTI-SSFSE, the image distortions were negligible. The diffusion tensor SSFSE method was also able to assess diffusion abnormalities in a brain stem hemorrhage, unaffected by the spatial distortions that limited conventional EPI acquisition.     

DTI at 7 and 3 T: systematic comparison of SNR and its influence on quantitative metrics

Diffusion tensor imaging (DTI) and advanced related methods such as diffusion spectrum and kurtosis imaging are limited by low signal-to-noise ratio (SNR) at conventional field strengths. DTI at 7 T can provide increased SNR; however, B0 and B1 inhomogeneity and shorter T2? still pose formidable challenges. The purpose of this study was to quantify and compare SNR at 7 and 3 T for different parallel imaging reduction factors, R, and TE, and to evaluate SNRs influences on fractional anisotropy (FA) and apparent diffusion coefficient (ADC). We found that R>4 at 7 T and R≥2 at 3 T were needed to reduce geometric distortions due to B0 inhomogeneity. For these R at 7 T, SNR was 70-90 for b=0 s/mm² and 22-28 for b=1000s/mm² in central brain regions. SNR was lower at 3 T (40 for b=0 s/mm² and 15 for b=1000 s/mm²) and in lateral brain regions at 7 T due to B1 inhomogeneity. FA and ADC did not change with MRI field strength, SENSE factor or TE in the tested range. However, the coefficient of variation for FA increased for SNR <15 and for SNR <10 in ADC, consistent with published theoretical studies. Our study demonstrates that 7 T is advantageous for DTI and lays the groundwork for further development. Foremost, future work should further address challenges with B0 and B1 inhomogeneity to take full advantage for the increased SNR at 7 T.     

小动物高分辨扩散加权成像在临床 MRI 上的实现

在临床用MRI系统上对小动物扩散加权成像一般采用回波平面成像序列,但是回波平面成像易受偏共振效应的影响,得到的图像伪影大、几何变形严重、图像分辨率低,无法探究微小的生物组织结构. 该文报道了在临床用3 T MRI系统上采用自旋回波序列实现了高分辨扩散加权成像. 为减少运动伪影,序列中整合了导航回波矫正技术. 对脑缺血模型大鼠脑部的扫描结果显示,自旋回波扩散加权序列获得的图像基本没有发生形变,并且具有较高的分辨率和较好的信噪比.     

Cross-term-compensated pulsed-gradient stimulated echo MR with asymmetric gradient pulse lengths

The magic asymmetric gradient stimulated echo (MAGSTE) sequence developed to compensate background-gradient cross-terms in the preparation and readout interval independently, assumes identical lengths for the two gradient pulses applied in each interval. However, this approach is rather inefficient if some extra delay time is present in one half of an interval, e.g. as required for special RF excitations or spatial encoding prior to the stimulated echo in MR imaging. Therefore, a generalized version of the sequence is presented that considers different gradient pulse lengths within an interval. It is shown theoretically that (i) for any pulse lengths a "magic" amplitude ratio exists which ensures the desired cross-term compensation in each interval and that (ii) prolonging one of the gradients can deliver a considerably higher diffusion weighting efficiency. These results are confirmed in MR imaging experiments on phantoms and in vivo in the human brain at 3T using an echo-planar trajectory. In the examples shown, typically 10 times higher b values can be achieved or an echo time reduction with a 40% signal gain in brain white matter. Thus, in case of asymmetric timing requirements, the generalized MAGSTE sequence with different gradient pulse lengths may help to overcome signal-to-noise limitations in diffusion weighted MR.     

Geometrically constrained two-tensor model for crossing tracts in DWI

MR diffusion tensor imaging (DTI) of the brain and spine provides a unique tool for both visualizing directionality and assessing intactness of white matter fiber tracts in vivo. At the spatial resolution of clinical MRI, much of primate white matter is composed of interdigitating fibers. Analyses based on an assumed single diffusion tensor per voxel yield important information about the average diffusion in the voxel but fail to reveal structure in the presence of crossing tracts. Until today, all clinical scans assume only one tensor, causing potential serious errors in tractography. Since high angular resolution imaging remains, so far, untenable for routine clinical use, a method is proposed whereby the single-tensor field is augmented with additional information gleaned from standard clinical DTI. The method effectively resolves two distinct tract directions within voxels, in which only two tracts are assumed to exist. The underlying constrained two-tensor model is fitted in two stages, utilizing the information present in the single-tensor fit. As a result, the necessary MRI time can be drastically reduced when compared with other approaches, enabling widespread clinical use. Upon evaluation in simulations and application to in vivo human brain DTI data, the method appears to be robust and practical and, if correctly applied, could elucidate tract directions at critical points of uncertainty.     

Development and initial evaluation of 7-T q-ball imaging of the human brain

Diffusion tensor imaging (DTI) noninvasively depicts white matter connectivity in regions where the Gaussian model of diffusion is valid but yields inaccurate results in those where diffusion has a more complex distribution, such as fiber crossings. q-ball imaging (QBI) overcomes this limitation of DTI by more fully characterizing the angular dependence of intravoxel diffusion with larger numbers of diffusion-encoding directional measurements at higher diffusion-weighting factors (b values). However, the former technique results in longer acquisition times and the latter technique results in a lower signal-to-noise ratio (SNR). In this project, we developed specialized 7-T acquisition methods utilizing novel radiofrequency pulses, eight-channel parallel imaging EPI and high-order shimming with a phase-sensitive multichannel B0 field map reconstruction. These methods were applied in initial healthy adult volunteer studies, which demonstrated the feasibility of performing 7-T QBI. Preliminary comparisons of 3 T with 7 T within supratentorial crossing white matter tracts documented a 79.5% SNR increase for b=3000 s/mm2 (P=.0001) and a 38.6% SNR increase for b=6000 s/mm2 (P=.015). With spherical harmonic reconstruction of the q-ball orientation distribution function at b=3000 s/mm2, 7-T QBI allowed for accurate visualization of crossing fiber tracts with fewer diffusion-encoding acquisitions as compared with 3-T QBI. The improvement of 7-T QBI at b factors as high as 6000 s/mm2 resulted in better angular resolution as compared with 3-T QBI for depicting fibers crossing at shallow angles. Although the increased susceptibility effects at 7 T caused problematic distortions near brain-air interfaces at the skull base and posterior fossa, these initial 7-T QBI studies demonstrated excellent quality in much of the supratentorial brain, with significant improvements as compared with 3-T acquisitions in the same individuals.     

扩散张量成像的人脑模板构建

扩散张量脑模板包含丰富的大脑白质组织信息,在空间标准化或者脑图谱创建中具有重要价值,然而基于扩散张量模型构建的脑模板精度不高,特别是在脑部复杂的神经元微观结构区域中应用受到限制.针对这一问题,研究者们提出了基于高分辨率扩散成像构建大脑模板的方法.本文对使用扩散张量成像方法进行脑模板构建的研究进展进行了综述,首先介绍了扩散张量脑模板构建的发展进程,阐述了脑模板构建中解决的技术问题及同时存在的局限性;接着详细论述了基于扩散频谱成像及高角度分辨率扩散成像构建脑模板的不同方法间的差异,并总结了这些研究方法取得的重要进展;最后通过分析目前研究进展提出该研究问题中存在的不足以及未来的发展趋势.     

High-resolution diffusion imaging using phase-corrected segmented echo-planar imaging

Diffusion magnetic resonance imaging (MRI) was performed with a high-resolution segmented echo-planar imaging technique, which provided images with substantially less susceptibility artifacts than images obtained with single-shot echo-planar imaging (EPI). Diffusion imaging performed with any multishot pulse sequence is inherently sensitive to motion artifacts and in order to reduce motion artifacts, the presented method utilizes navigator echo phase corrections, performed after a one-dimensional Fourier transform along the frequency-encoding direction. Navigator echo phases were fitted to a straight line prior to phase correction to avoid errors from internal motion. In vivo imaging was performed using electro cardiographic (ECG) triggering. Apparent diffusion coefficient (ADC) maps were calculated on a pixel-by-pixel basis using up to seven diffusion sensitivities, ranging from b = 0 to 1129 x 10(6) s/m(2).     

New technical developments in magnetic resonance imaging of epilepsy

Within the last several years a number of technical developments have been made in magnetic resonance imaging (MRI) that can potentially impact clinical and research MR imaging applications in epilepsy. These include developments in instrumentation and in pulse sequences. Advances in instrumentation include higher capacity gradient systems and multiple receiver coils as directed to brain imaging. Advances in pulse sequence include use of fast or turbo-spin-echo techniques, variants of echo-planar imaging, and sequences such as fluid-attenuation inversion recovery (FLAIR) targeted to specific applications of brain imaging. The purpose of this paper is to review several of these developments.     

On the use of the FLAIR technique to improve the correction of eddy current induced artefacts in MR diffusion tensor imaging

Eddy current induced geometric distortions can only be accurately corrected in brain diffusion-weighted echo-planar (DW-EP) images for b-values less than approximately 300 s mm(-2) using the iterative cross-correlation (ICC) algorithm. This is due to the difference in signal intensity of the cerebrospinal fluid (CSF) compartment in the diffusion-weighted and baseline T(2)-weighted echo-planar (T2W-EP) images. At larger values of b, image misalignment artefacts can, however, be removed by directly correlating CSF-suppressed T2W-EP images with non-CSF-suppressed and CSF-suppressed DW-EP images. Separate phantom experiments can also be performed to provide eddy current calibration data. Here the ability of these methods to remove eddy current induced artefacts from DW-EP images collected in volunteer diffusion tensor imaging (DTI) experiments is investigated. Monte Carlo simulations show that in order for the ICC algorithm to produce accurate estimates of the eddy current induced distortions at b-values greater than 1000 s mm(-2), the degree of CSF suppression should be greater than approximately 80%. This condition is typically met for FLAIR inversion times between 0.5 and 0.8 of the spin-lattice relaxation time of CSF. In volunteer studies the most complete image realignment was provided by direct correlation of CSF-suppressed T2W-EP and DW-EP images acquired in the FLAIR DTI experiment. These results indicate that although calibration data obtained from brain or phantom images can significantly reduce eddy current induced distortions, the optimum image realignment achievable using post-processing methods is likely to be that obtained by direct image warping techniques.     

Rapid acquisition transverse relaxometric imaging

Segmented echo-planar acquisitions have been incorporated into a multiecho imaging sequence to produce a MRI method for rapid transverse relaxometry. The method is demonstrated on gel phantoms and rat brain and found to produce unbiased estimates of T(2). Gradient performance can be a limiting factor for the implementation of this technique and there is a cost in signal-to-noise ratio resulting from the higher bandwidth required, as is typical for echo-planar acquisitions.     

The cost of parallel imaging in functional MRI of the human brain

While the advantages of parallel acquisition techniques for echo-planar imaging (EPI) are well documented for studies affected by magnetic field inhomogeneities, this work focuses on the costs in functional MRI of brain regions without artifacts due to susceptibility effects. For a visual stimulation paradigm and relative to conventional EPI (2.9 T; TR/TE=2000/36 ms), the use of parallel acquisition at a reduction factor of 2 decreased the mean number of activated voxels by 21% at 2 x 2 x 2-mm(3) resolution (n=6) and by 15% at 3 x 3 x 3-mm(3) resolution (n=6). The loss of sensitivity reflects both a decreased signal-to-noise ratio of the native images due to a lower number of contributing gradient echoes and a decreased BOLD MRI sensitivity due to the coverage of a smaller range of TEs.     

Localized high-resolution DTI of the human midbrain using single-shot EPI,parallel imaging,and outer-volume suppression at 7 T

Localized high-resolution diffusion tensor images (DTI) from the midbrain were obtained using reduced field-of-view (rFOV) methods combined with SENSE parallel imaging and single-shot echo planar (EPI) acquisitions at 7 T. This combination aimed to diminish sensitivities of DTI to motion, susceptibility variations, and EPI artifacts at ultra-high field. Outer-volume suppression (OVS) was applied in DTI acquisitions at 2- and 1-mm² resolutions, b = 1000 s/mm², and six diffusion directions, resulting in scans of 7- and 14-min durations. Mean apparent diffusion coefficient (ADC) and fractional anisotropy (FA) values were measured in various fiber tract locations at the two resolutions and compared. Geometric distortion and signal-to-noise ratio (SNR) were additionally measured and compared for reduced-FOV and full-FOV DTI scans. Up to an eight-fold data reduction was achieved using DTI-OVS with SENSE at 1 mm², and geometric distortion was halved. The localization of fiber tracts was improved, enabling targeted FA and ADC measurements. Significant differences in diffusion properties were observed between resolutions for a number of regions suggesting that FA values are impacted by partial volume effects even at a 2-mm² resolution. The combined SENSE DTI-OVS approach allows large reductions in DTI data acquisition and provides improved quality for high-resolution diffusion studies of the human brain.     

Age-related diffusion patterns in human lumbar intervertebral discs: a pilot study in asymptomatic subjects

Diffusion tensor imaging (DTI) may provide an accurate noninvasive method of detecting degenerative matrix alterations in human lumbar intervertebral discs (IVDs). This study aimed to investigate age-related degenerative changes in human lumbar IVDs using DTI. Thirty asymptomatic volunteers ranging in age from 25 to 67 years underwent single-shot diffusion weighted echo-planar imaging on a 3 T scanner. DTI-derived metrics including fractional anisotropy (FA) and mean diffusivity (MD) were analyzed by a histogram analysis method. A Mann-Whitney test was used to compare subject groups (young and elderly) with respect to the diffusion measures, and piecewise linear regression was used to characterize the change in each metric as a function of age. We found significant age-related changes in the elderly adult group, with decrease of MD (11%, P<.001) and increase of FA (20%, P<.001). Our results demonstrate that the degenerative-related changes taking place in the IVDs through aging can be quantitatively accessed by DTI-derived metrics, while the morphologic changes are difficult to be identified in conventional T(2)-weighted images. Our initial findings suggest that it would be worthwhile to validate the relationship between DTI metrics and the actual degenerative status of IVDs using extracted disc samples and to extend it to studies on patients with degenerative discs in order to further explore the clinical usefulness and relevance of DTI.     

Single-shot diffusion imaging at 2.0 tesla

A single-shot echo-planar diffusion imaging sequence (IVIM-EPI: intra-voxel incoherent motion echo-planar imaging) is presented, which is immune from the motion artifacts which may seriously impair images obtained using other diffusion imaging sequences. For a static water phantom, the measured value of diffusion constant (D = 2.30 × 10⁻⁹ m² s⁻¹ at T = 298 K) shows excellent agreement with that obtained using a multipulse spin-echo technique and with literature values. Single-shot diffusion imaging can now be used reliably to make dynamic time-course studies with excellent time resolution.     

Generalized MAGSTE with bipolar diffusion-weighting gradient pulses

The generalized magic asymmetric gradient stimulated echo (generalized MAGSTE) sequence compensates background gradient cross-terms and can be adjusted to asymmetric timing boundary conditions which for instance are present in echo-planar MR imaging. However, its efficiency is not optimal because one of the two diffusion-weighting gradients applied in each interval usually must have a reduced amplitude to ensure the desired cross-term compensation. In this work, a modification of generalized MAGSTE is investigated where this gradient pulse is replaced by two gradient pulses with full amplitude but opposite polarities. It is shown that with these bipolar gradients (i) the sequence retains the cross-term compensation capability for an appropriate choice of the gradient pulse durations and (ii) the diffusion-weighting efficiency is improved, i.e. higher k and b values can be achieved without prolonging the echo time. These results are confirmed in MR imaging experiments on phantoms and in vivo in the human brain at 3 T using spin-echo and echo-planar MR imaging. In the examples shown, the b value could be increased between about 30% and 200% when using the bipolar gradient pulses. Thus, bipolar gradients may help to improve the applicability of the generalized MAGSTE sequence.