FORMATION BY HYDROGEN PEROXIDE OR 254 nm RADIATION OF A NEAR-UV CHROMOPHORE FROM PEPTIDE-BOUND CYSTEINE

Abstract Treatment of glutathione or N-acetylcysteinamide in water with hydrogen peroxide, or with 254 nm radiation together with molecular oxygen, results in the formation of a near-UV chromophore having maximal absorption at 305 nm. From examination of related compounds, it is apparent that the N-acylcysteinamide residue is the key element required for generation of the 305 nm chromophore. The structure of this near-UV chromophore is stable to base but unstable in aqueous acid, is relatively sensitive to oxidation by hydrogen peroxide but is only very slowly reduced by sodium borohydride and displays good thermal stability at 50°C.     

A Theoretical Study on Hydrogen‐Bonded Complex of Proflavine Cation and Water: The Site‐dependent Feature of Hydrogen Bond Strengthening and Weakening

The intermolecular hydrogen‐bonds between proflavine cation (PC) and water molecules are investigated by density functional theory (DFT) and time‐dependent density functional theory (TDDFT) methods. The ground‐state geometry optimizations, electronic excitation energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated proflavine cation, the hydrogen‐bonded PC–H2O dimer and PC–(H2O)2 trimer are calculated. Intermolecular hydrogen bonds at the central site of proflavine molecule are found to be stronger than the peripheral site. The hydrogen bond N–H???O for the hydrogen‐bonded dimer are indicated to be weakened in the excited states, since the excitation energy is increased slightly comparing to the monomer. Hydrogen bonds of PC–(H2O)2 trimer with the same type as the dimer are strengthened in the excited state, which is demonstrated by the decrease of the excited energies. Thus, hydrogen bond strengthening and weakening are observed to reveal site dependent feature in proflavine molecule. Furthermore, the hydrogen bond at central site induces the blue‐shift of the absorption spectrum, while the ones at peripheral site induce red‐shift. Hydrogen bonds with the same type at peripheral and central sites of proflavine molecule provide different effects on the photochemical and photophysical properties of proflavine.     

Consequences of chain networks on thermodynamic, dielectric and structural properties for liquid water

A vast array of experimental data on water provides a global view of the liquid that implicates its tetrahedral hydrogen-bonding network as the unifying molecular connection to its observed structural, thermodynamic, and dielectric property trends with temperature. Recently the classification of water as a tetrahedral liquid has been challenged based on X-ray absorption (XAS) experiments on liquid water (Ph. Wernet et al., Science, 2004, 304, 995), which have been interpreted to show a hydrogen-bonding network that replaces tetrahedral structure with chains or large rings of water molecules. We examine the consequences of tetrahedral vs. chain networks using three different modified water models that exhibit a local hydrogen bonding environment of two hydrogen bonds (2HB) and therefore networks of chains. Using these very differently parameterized models we evaluate their bulk densities, enthalpies of vaporization, heat capacities, isothermal compressibilities, thermal expansion coefficients, and dielectric constants, over the temperature range of 235-323 K. We also evaluate the entropy of the 2HB models at room temperature and whether such models support an ice I(h) structure. All show poor agreement with experimentally measured thermodynamic and dielectric properties over the same temperature range, and behave similarly in most respects to normal liquids.     

Structure of stable and metastable water. Analysis of Voronoi polyhedra of molecular dynamics models

Conclusions The basic results that we have obtained in regard to the structure of water, by an analysis of Voronoi polyhedra and simplified Voronoi polyhedra, are as follows: the network of hydrogen bonds in water is not similar to an ideal random tetrahedral network under any conditions; in the actual network, there are major deviations from the tetrahedral directions of the bonds, such that molecules that are distant with respect to the bonds may be located closer than the first molecules. When the density is reduced from 1.0 to 0.8 g/cm³, the tetrahedral coordination of the hydrogen bond network is improved: the angles between bonds approach tetrahedral. This can be interpreted as a consequence of a decrease in the internal pressure that had forced the network to be deformed under normal conditions. However, the capability for rectifying the random quasitetrahedral network by removing the pressure has a limit corresponding to a density of 0.8 g/cm³. When the density is further reduced, the network becomes unstable, forming discontinuities and cavities that are large on a molecular scale.The results that we have set forth in this article give a rather clear demonstration of the possibilities of the Voronoi polyhedra method in analyzing the construction of the hydrogen bond networks that are the basis of water structure. An important feature of the method is that it does not depend on an exact definition of the hydrogen bond. This makes it possible to examine the properties of the network critically in terms of greater or lesser tetrahedricity without constructing the network itself. More detailed information, more convenient for interpretation, is obtained when the change is made from conventional to simplified Voronoi polyhedra in which no account is taken of most of the neighbors that are second along the bonds.Institute of Chemical Kinetics and Combustion, Siberian Branch of the Russian Academy of Sciences. Dortmund University, Germany. Translated from Zhurnal Strukturnoi Khimii, Vol. 33, No. 2, pp. 79–87, March–April, 1992.     

Computational study of structural and dynamical properties of formamide-water mixtures

A molecular dynamics simulation study of structural and dynamical properties in liquid mixtures of formamide and water is presented. Site-site radial pair distribution functions, local mole fractions, pair energy distributions, and tetrahedral orientational order are the quantities analyzed to investigate the local structure in the simulated mixtures, along with a review of the intermolecular structure in terms of the distribution of hydrogen bonds. Our results indicate that there is a substitution of formamide molecules by water in the hydrogen bonds and a formation of a common hydrogen bond network. By analyzing the extent of tetrahedral order in the liquid as a function of composition, it is observed that whereas the tetrahedral network of liquid water is progressively lost by increasing the formamide concentration, the water structure within the first coordination shell is preserved and somewhat enhanced. The hydrogen-bond mean lifetimes were estimated by performing a time integration of the autocorrelation functions of bond occupation numbers. The lifetimes associated with hydrogen bonds between water, formamide, and interspecies pairs are found to increase with increasing formamide concentration. The lifetimes of the water hydrogen bonds show the largest variations, supporting the picture of an enhancement of the water structure among the nearest neighbors within the first coordination shell. We have used two different force field models for water, SPC/E [J. C. Berendsen et al., J. Phys. Chem. 91, 6269 (1987)] and TIP4P/2005 [J. L. F. Abascal and C. Vega, J. Chem. Phys. 123, 234505 (2005)]. Our results for structural and dynamical properties yield very small differences between those models, the TIP4P/2005 predicting a slightly more structured liquid and, consequently, exhibiting a slightly slower translational and librational dynamics.     

Assembly of hydrogen bonded diamondoid networks based on synthetic metal-organic tetrahedral nodes

Reaction of Mn(ClO4)2 or Co(PF6)2 with 4,4'-dipyridine-dioxide (dpdo) produced novel molecular species [M(dpdo)4(H2O)2]2+, which hold a tetrahedral configuration notwithstanding their octahedral environment around the metal centers. The tetrahedral moieties are further assembled through hydrogen bonds between peripheral NO ends of dpdo ligands and coordinated water molecules, giving rise to 3D diamondoid networks.     

Calculation of near-edge x-ray-absorption fine structure at finite temperatures: spectral signatures of hydrogen bond breaking in liquid water

We calculate the near-edge x-ray-absorption fine structure of H(2)O in the gas, hexagonal ice, and liquid phases using heuristic density-functional based methods. We present a detailed comparison of our results with experiment. The differences between the ice and water spectra can be rationalized in terms of the breaking of hydrogen bonds around the absorbing molecule. In particular the increase in the pre-edge absorption feature from ice to water is shown to be due to the breaking of a donor hydrogen bond. We also find that in water approximately 19% of hydrogen bonds are broken.     

Nature of the aqueous hydroxide ion probed by X-ray absorption spectroscopy

X-ray absorption spectra of aqueous 4 and 6 M potassium hydroxide solutions have been measured near the oxygen K edge. Upon addition of KOH to water, a new spectral feature (532.5 eV) emerges at energies well below the liquid water pre-edge feature (535 eV) and is attributed to OH- ions. In addition to spectral changes explicitly due to absorption by solvated OH- ions, calculated XA spectra indicate that first-solvation-shell water molecules exhibit an absorption spectrum that is unique from that of bulk liquid water. It is suggested that this spectral change results primarily from direct electronic perturbation of the unoccupied molecular orbitals of first-shell water molecules and only secondarily from geometric distortion of the local hydrogen bond network within the first hydration shell. Both the experimental and the calculated XA spectra indicate that the nature of the interaction between the OH- ion and the solvating water molecules is fundamentally different than the corresponding interactions of aqueous halide anions with respect to this direct orbital distortion. Analysis of the Mulliken charge populations suggests that the origin of this difference is a disparity in the charge asymmetry between the hydrogen atoms of the solvating water molecules. The charge asymmetry is induced both by electric field effects due to the presence of the anion and by charge transfer from the respective ions. The computational results also indicate that the OH- ion exists with a predominately "hyper-coordinated" solvation shell and that the OH- ion does not readily donate hydrogen bonds to the surrounding water molecules.     

Structural studies on the hydration of L-glutamic acid in solution

A combination of neutron diffraction augmented with isotopic substitution and computer modeling using empirical potential structure refinement has been used to extract detailed structural information for L-glutamic acid dissolved in 2 M NaOH solution. This work shows that the tetrahedral hydrogen bonding network in water is severely disrupted by the addition of glutamic acid and NaOH, with the number of water-water hydrogen bonds being reduced from 1.8 bonds per water molecule in pure water to 1.4 bonds per water molecule in the present solution. In the glutamic acid molecule, each carboxylate oxygen atom forms an average of three hydrogen bonds with the surrounding water solvent with one of these hydrogens being shared between the two oxygen atoms on each carboxylate group, while each amine hydrogen forms a single hydrogen bond with the surrounding water solvent. Additionally, the average conformation of the glutamic acid molecules in these solutions is extracted.     

The hydration of glucose: the local configurations in sugar-water hydrogen bonds

The hydration of a simple sugar is an essential model for understanding interactions between hydrophilic groups and interfacial water molecules. Here I perform first-principles molecular dynamics simulations on a glucose-water system and investigate how individual hydroxyl groups are locally hydrated. I demonstrate that the hydroxyl groups are less hydrated and more incompatible with a locally tetrahedral network of hydrogen bonds than previously thought. The results suggest that the hydroxyl groups form roughly two hydrogen bonds. Further, I find that the local hydration of the hydroxyl groups is sensitively affected by seemingly small variations in the local electronic structure and bond polarity of the groups. My findings offer insight into an atomic-level understanding of sugar-water interactions.     

Theory of electron solvation in polar liquids: a continuum model

The solvation of electrons in polar liquids is analyzed on the basis of an extended continuum model. In addition to the long-range electron-dipole interaction two short-range interactions are introduced. Among others one accounts for interactions with groups capable of forming hydrogen bonds and the second for quadrupolar characteristics of the liquid molecules. Both are induced by the orientation of the molecular dipole. Applying the scaling method a proper reaction coordinate is introduced and the solvation dynamics are discussed for the electron in the electronic ground state and after excitation to the p-type excited state. The observed spectral evolution of the transient absorption spectra, after two photon excitations for electrons in water and in methanol, is well described by this theory. An analytic estimate for the nonradiative deactivation from the electronically excited solvated electron is found to be consistent with an observed lifetime of 50 fs for the electron in water. The theory predicts an about three times slower internal conversion in methanol as solvent in comparison with water.     

Excited-State Hydrogen Bonding Dynamics of Hydrogen-Bonded Clusters Formed by of Coumarin Derivatives in Aqueous Solution: A Time-Dependent Density Functional Theory Study

The time-dependent density functional theory and the density functional theory are used to investigate the nature of hydrogen bonds formed by the derivative of the coumarin (TFKC) and the water molecules. The ground-state geometry optimizations, electronic excited energies and corresponding oscillation strengths for the TFKC monomer, the hydrogen-bonded TFKC–Water (HBA) dimer, TFKC–Water (HBB) dimer and TFKC–2Water complex are calculated. We find that, upon photoexcitation, the weaker hydrogen bond in the ground state will be affected by the relatively large impact for TFKC in the water. For better understanding the properties of the hydrogen bonds in the excited states, the frontier molecular orbitals of the S0 and S1 states are shown, and we find the obvious electron density transitions form the water molecules to the TFKC monomer. The electron transfer is expected to be the reason the hydrogen bond dynamics happens.     

Spectrophotometric nonenzymatic determination of hydrogen peroxide using silver nanoparticles

A nonenzymatic method was developed for the detection and quantification of hydrogen peroxide using metallic sols obtained by the reduction of silver compounds with sodium borohydride in the presence of a surface stabilizer. These sols changed color on exposure to aqueous solutions of hydrogen peroxide. The nature of the stabilizer used in sol preparation affects spectral characteristics of the final product formed in the reaction with hydrogen peroxide. In the case of polyvinyl pyrrolidone, the intensity of the surface plasmon resosnance absorption band at 405 nm decreased. In using cetyltrimethylammonium bromide, a signal at 519 nm appeared along with the similar decrease in the absorption band at 408 nm. The band intensity depends on the concentration of hydrogen peroxide. The described phenomena can form a basis for the development of procedures for the qualitative and quantitative determination of hydrogen peroxide in water bodies.     

高岭石-水体系中水分子结构的分子动力学模拟

以Hendricks模型为初始结构, 利用CLAYFF力场对高岭石-水体系进行无晶体学限制的分子动力学模拟. 结果表明, 层间水有三种类型: I型类似于Costanzo提出的“洞水”分子, 其HH矢量(水分子中从一个氢原子位置指向另一个氢原子位置的方向矢量)平行于(001)平面, 而C2轴稍微倾斜于(001)面法线; II型类似于“连接水”, 一个氢氧键指向临近的层间四面体氧形成氢键, 另一个氢氧键与(001)面近似平行; III型水分子在层间近似保持为竖直状, 一个氢与层间四面体氧形成氢键, 而另一个氢与对面层的羟基氧形成氢键. 高岭石羟基氢沿(001)晶面法线的浓度曲线显示一部分羟基指向变为近似平行于(001)面, 羟基氧因此能够暴露出来与层间水分子氢形成氢键. 此外, 模拟中还观察到部分II型水分子氧偏离于层间的平均位置而更靠近四面体层, 这和Costanzo的实验结果一致, 可能是X射线谱图中(002)弱衍射峰出现的原因.     

Reconsideration on hydrogen bond strengthening or cleavage of photoexcited coumarin 102 in aqueous solvent: a DFT/TDDFT study

In this work, the excited-state hydrogen bonding dynamics of photoexcited coumarin 102 in aqueous solvent is reconsidered. The electronically excited states of the hydrogen bonded complexes formed by coumarin 102 (C102) chromophore and the hydrogen donating water solvent have been investigated using the time-dependent density functional theory method. Two intermolecular hydrogen bonds between C102 and water molecules are considered. The previous works (Wells et al., J Phys Chem A 2008, 112, 2511) have proposed that one intermolecular hydrogen bond would be strengthened and the other one would be cleaved upon photoexcitation to the electronically excited states. However, our theoretical calculations have demonstrated that both the two intermolecular hydrogen bonds between C102 solute and H(2)O solvent molecules are significantly strengthened in electronically excited states by comparison with those in ground state. Hence, we have confirmed again that intermolecular hydrogen bonds between C102 chromophore and aqueous solvents are strengthened not cleaved upon electronic excitation, which is in accordance with Zhao's works.     

Réactivité de spirochromènes et de mérocyanines azahétérocycliques vis-à-vis de quelques agents nucléophiles

Under the action of nucleophile reagents such as water, hydrogen sulfide and sodium borohydride, the saturated azaheterocyclic spirochromenes are opened either on the azaheterocyclic side or on the benzopyran side or on both parts simultaneously. The merocyanines are either partially reduced or decomposed by the sodium borohydride.     

Coupling molecular rigidity and flexibility on fused backbones for NIR-II photothermal conversion

Great attention is being increasingly paid to photothermal conversion in the near-infrared (NIR)-II window (1000–1350 nm), where deeper tissue penetration is favored. To date, only a limited number of organic photothermal polymers and relevant theory have been exploited to direct the molecular design of polymers with highly efficient photothermal conversion, specifically in the NIR-II window. This work proposes a fused backbone structure locked via an intramolecular hydrogen bonding interaction and double bond, which favors molecular planarity and rigidity in the ground state and molecular flexibility in the excited state. Following this proposal, a particular class of NIR-II photothermal polymers are prepared. Their remarkable photothermal conversion efficiency is in good agreement with our strategy of coupling polymeric rigidity and flexibility, which accounts for the improved light absorption on going from the ground state to the excited state and nonradiative emission on going from the excited state to the ground state. It is envisioned that such a concept of coupling polymeric rigidity and flexibility will offer great inspiration for developing NIR-II photothermal polymers with the use of other chromophores.

Low bandgap and large deformation generally conflict each other. This work couples molecular rigidity and flexibility by intramolecular hydrogen bonds and double bonds to achieve NIR-II light absorption and reinforced internal conversion at the same time.     

Structure and hydrogen bonding in liquid and supercritical aqueous NaCl solutions at a pressure of 1000 bar and temperatures up to 500 degrees C: A comprehensive experimental and computational study

The behavior of aqueous 1.1 M NaCl solution at a constant pressure of 1000 bar in the temperature range 25-500 degrees C has been studied with the use of IR absorption, Raman scattering, X-ray diffraction, and molecular dynamics (MD) simulations. The results are compared with the data for pure water under identical external conditions. The main purpose of the experimental and theoretical studies was to understand in what way an electrolyte dissolved in water influences the hydrogen bonding and structural features of water. As was found, the vibrational spectra show no essential difference between the properties of solution and pure water. However, the experimental pair correlation functions and the results of MD simulations present an evidence for very different nature of these substances. A characteristic feature of the structure of NaCl solution is a considerable contribution of strong O-H...Cl- bonds. As the temperature increases, the number of such bonds decreases partially due to a phenomenon of ion pairing, so that at high temperatures the properties of the solution become closer to the properties of water.     

Hydrogen bond effects in the ground and excited singlet states of 4H-1-benzopyrane-4-thione in water--theory and experiment

The hydrogen bond energies for 4H-1-benzopyrane-4-thione (BPT) in its ground and two lowest excited singlet electronic states have been determined using ab initio methods. It was shown that the BPT molecule can form, as an acceptor, four relatively strong hydrogen bonds with water molecules, leading to a stable complex in the ground electronic state S(0). The hydrogen bonds involving the sulfur atom from the thiocarbonyl group were found to be stronger than those involving the oxygen atom from the benzopyran moiety. The former hydrogen bonds were predicted to become significantly weaker upon excitation to the S(1) state and, in contrast, stronger upon excitation to the S(2) state. Calculated changes in the hydrogen bond energy due to the S(0)→ S(1) and S(0)→ S(2) excitation are in very good agreement with the experimental values obtained from the absorption solvatochromic study, according to a procedure proposed by us in [E. Krystkowiak, et al., J. Photochem. Photobiol. A: Chem., 2006, 184, 250]. The maxima of absorption spectra of the BPT-water hydrogen-bonded complex, calculated taking into consideration nonspecific solute-solvent interactions, are also in good agreement with the experimental results.     

Hydrogen bond lifetime dynamics at the interface of a surfactant monolayer

The dynamics of water near the polar headgroups of surfactants in a monolayer adsorbed at the air/water interface is likely to play a decisive role in determining the physical behavior of such organized assemblies. We have carried out an atomistic molecular dynamics (MD) simulation of a monolayer of the anionic surfactant sodium bis(2-ethyl-1-hexyl) sulfosuccinate (aerosol-OT or AOT) adsorbed at the air/water interface. The simulation is performed at room temperature with a surface coverage of that at the critical micelle concentration (78 Angstrom(2)/molecule). Detailed analyses of the lifetime dynamics of surfactant-water (SW) and water-water (WW) hydrogen bonds at the interface have been carried out. The nonexponential hydrogen bond lifetime correlation functions have been analyzed by using the formalism of Luzar and Chandler, which allowed identification of the bound states at the interface and quantification of the dynamic equilibrium between bound and quasi-free water molecules, in terms of time-dependent relaxation rates. It is observed that the water molecules present in the first hydration layer form strong hydrogen bonds with the surfactant headgroups and hence have longer lifetimes. Importantly, it is found that the overall relaxation of the SW hydrogen bonds is faster for those water molecules which form two hydrogen bonds with the surfactant headgroups than those forming one such hydrogen bond. Equally interestingly, it is further noticed that water molecules beyond the first hydration layer form weaker hydrogen bonds than pure bulk water.