Vibrational Spectroscopy of the Borate Mineral Priceite—Implications for the Molecular Structure

ABSTRACT

Priceite is a calcium borate mineral and occurs as white crystals in the monoclinic pyramidal crystal system. We have used a combination of Raman spectroscopy with complimentary infrared spectroscopy and scanning electron microscopy with Energy-dispersive X-ray Spectroscopy (EDS) to study the mineral priceite. Chemical analysis shows a pure phase consisting of B and Ca only. Raman bands at 956, 974, 991, and 1019 cm^?1 are assigned to the BO stretching vibration of the B₁₀O₁₉ units. Raman bands at 1071, 1100, 1127, 1169, and 1211 cm^?1 are attributed to the BOH in-plane bending modes. The intense infrared band at 805 cm^?1 is assigned to the trigonal borate stretching modes. The Raman band at 674 cm^?1 together with bands at 689, 697, 736, and 602 cm^?1 are assigned to the trigonal and tetrahedral borate bending modes. Raman spectroscopy in the hydroxyl stretching region shows a series of bands with intense Raman band at 3555 cm^?1 with a distinct shoulder at 3568 cm^?1. Other bands in this spectral region are found at 3221, 3385, 3404, 3496, and 3510 cm^?1. All of these bands are assigned to water stretching vibrations. The observation of multiple bands supports the concept of water being in different molecular environments in the structure of priceite. The molecular structure of a natural priceite has been assessed using vibrational spectroscopy.     

Experimental and ab initio DFT calculated Raman spectrum of Sudan I,a red dye

The red dye Sudan I was investigated by Raman spectroscopy using different excitation wavelengths (1064, 532 and 244 nm). A calculation of the Raman spectrum based on quantum mechanical ab initio density functional theory (DFT) was made using the RB3LYP method with the 3‐21G and 6‐311 + G(d,p) basis sets. The vibrations in the region 1600–1000 cm⁻¹ were found to comprise various mixed modes including in‐plane stretching and bending of various C C, N N, C N and C O bonds and angles in the molecule. Below ∼900 cm⁻¹, the out‐of‐plane bending modes were dominant. The central hydrazo chromophore of the Sudan I molecule was involved in the majority of the vibrations through NN and C N stretching and various bending modes. Low‐intensity bands in the lower wavenumber range (at about 721, 616, 463 and 218 cm⁻¹) were selectively enhanced by the resonance Raman effect when using the 532 nm excitation line. Comparison was made with other azo dyes in the literature on natural, abundant plant pigments. The results show that there is a possibility in foodstuff analysis to distinguish Sudan I from other dyes by using Raman spectroscopy with more than one laser wavelength for resonance enhancement of the different bands Copyright © 2011 John Wiley & Sons, Ltd.     

A Vibrational Spectroscopic Study of the So-Called Healing Mineral Papagoite CaCuAlSi2O6(OH)3

ABSTRACT

Papagoite is a silicate mineral named after an American Indian tribe and was used as a healing mineral. Papagoite CaCuAlSi₂O₆(OH)₃ is a hydroxy mixed anion compound with both silicate and hydroxyl anions in the formula. The structural characterization of the mineral papagoite remains incomplete. Papagoite is a four-membered ring silicate with Cu²⁺ in square planar coordination.

The intense sharp Raman band at 1053 cm^?1 is assigned to the ν₁ (A _1g) symmetric stretching vibration of the SiO₄ units. The splitting of the ν₃ vibrational mode offers support to the concept that the SiO₄ tetrahedron in papagoite is strongly distorted. A very intense Raman band observed at 630 cm^?1 with a shoulder at 644 cm^?1 is assigned to the ν₄ vibrational modes.

Intense Raman bands at 419 and 460 cm^?1 are attributed to the ν₂ bending modes.

Intense Raman bands at 3545 and 3573 cm^?1 are assigned to the stretching vibrations of the OH units. Low-intensity Raman bands at 3368 and 3453 cm^?1 are assigned to water stretching modes. It is suggested that the formula of papagoite is more likely to be CaCuAlSi₂O₆(OH)₃ · xH₂O. Hence, vibrational spectroscopy has been used to characterize the molecular structure of papagoite.     

Infrared and Raman Spectroscopic Characterization of the Silicate Mineral Gilalite Cu5Si6O17 · 7H2O

Gilalite is a copper silicate mineral with a general formula of Cu₅Si₆O₁₇ · 7H₂O. The mineral is often found in association with another copper silicate mineral, apachite, Cu₉Si₁₀O₂₉ · 11H₂O. Raman and infrared spectroscopy have been used to characterize the molecular structure of gilalite. The structure of the mineral shows disorder, which is reflected in the difficulty of obtaining quality Raman spectra. Raman spectroscopy clearly shows the absence of OH units in the gilalite structure. Intense Raman bands are observed at 1066, 1083, and 1160 cm^?1.

The Raman band at 853 cm^?1 is assigned to the –SiO₃ symmetrical stretching vibration and the low-intensity Raman bands at 914, 953, and 964 cm^?1 may be ascribed to the antisymmetric SiO stretching vibrations. An intense Raman band at 673 cm^?1 with a shoulder at 663 cm^?1 is assigned to the ν₄ Si-O-Si bending modes. Raman spectroscopy complemented with infrared spectroscopy enabled a better understanding of the molecular structure of gilalite.     

Raman Spectroscopic Study of the Copper Silicate Mineral Apachite Cu9Si10O29 · 11H2O

ABSTRACT

Apachite, Cu₉Si₁₀O₂₉ · 11H₂O, is a mineral named after the American Indian Apache tribe. Raman and infrared spectroscopy have been used to characterize the molecular structure of apachite. The structure of the mineral shows disorder, which is reflected in the difficulty in obtaining quality Raman spectra. Raman spectroscopy clearly shows the presence of OH units in the apachite structure, which attests the formula to be not correct. Both Raman and infrared spectroscopy show the presence of water in the apachite structure. Different water molecules are present with different hydrogen bonding strengths. A suggested formula might be Cu₉Si₁₀O₂₃(OH)₁₂ · 5H₂O.

The Raman band at 967 cm^?1 is assigned to the –SiO₃ symmetrical stretching vibration and the bands at 997 and 1096 cm^?1 are assigned to the ν₃ –SiO₃ antisymmetric stretching vibrations. An intense Raman band at 673 cm^?1 with a shoulder at 663 cm^?1 is assigned to the ν₄ Si-O-Si bending modes. Raman spectroscopy complemented with infrared spectroscopy enabled a better understanding of the molecular structure of apachite.     

Raman spectroscopic study of the antimonate mineral lewisite (Ca,Fe, Na)2(Sb,Ti)2O6(O,OH)7

The mineral lewisite, (Ca, Fe, Na)₂(Sb, Ti)₂O₆(O, OH)₇, an antimony-bearing mineral, has been studied by Raman spectroscopy. A comparison is made with the Raman spectra of other minerals, including bindheimite, stibiconite, and roméite. The mineral lewisite is characterised by an intense sharp band at 517 cm^?1 with a shoulder at 507 cm^?1 assigned to SbO stretching modes. Raman bands of medium intensity for lewisite are observed at 300, 356, and 400 cm^?1. These bands are attributed to OSbO bending vibrations. Raman bands in the OH stretching region are observed at 3200, 3328, 3471 cm^?1, with a distinct shoulder at 3542 cm^?1. The latter is assigned to the stretching vibration of OH units. The first three bands are attributed to water stretching vibrations. The observation of bands in the 3200–3500 cm^?1 region suggests that water is involved in the lewisite structure. If this is the case then the formula may be better written as (Ca, Fe²⁺, Na)₂(Sb, Ti)₂(O, OH)₇ xH₂O.     

Raman and Infrared Spectroscopic Study of the Borate Mineral Kaliborite

We have studied the mineral kaliborite. The sample originated from the Inder B deposit, Atyrau Province, Kazakhstan, and is part of the collection of the Geology Department of the Federal University of Ouro Preto, Minas Gerais, Brazil. The mineral is characterized by a single intense Raman band at 756 cm^?1 assigned to the symmetric stretching modes of trigonal boron. Raman bands at 1229 and 1309 cm^?1 are assigned to hydroxyl in-plane bending modes of boron hydroxyl units. Raman bands are resolved at 2929, 3041, 3133, 3172, 3202, 3245, 3336, 3398, and 3517 cm^?1. These Raman bands are assigned to water stretching vibrations. A very intense sharp Raman band at 3597 cm^?1 with a shoulder band at 3590 cm^?1 is assigned to the stretching vibration of the hydroxyl units. The Raman data are complimented with infrared data and compared with the spectrum of kaliborite downloaded from the Arizona State University database. Differences are noted between the spectrum obtained in this work and that from the Arizona State University database. This research shows that minerals stored in a museum mineral collection age with time. Vibrational spectroscopy enhances our knowledge of the molecular structure of kaliborite.     

Vibrational Spectroscopic Characterization of the Arsenate Mineral Barahonaite: Implications for the Molecular Structure

The mineral barahonaite is in all probability a member of the smolianinovite group. The mineral is an arsenate mineral formed as a secondary mineral in the oxidized zone of sulphide deposits. We have studied the barahonaite mineral using a combination of Raman and infrared spectroscopy. The mineral is characterized by a series of Raman bands at 863 cm^?1 with low wavenumber shoulders at 802 and 828 cm^?1. These bands are assigned to the arsenate and hydrogen arsenate stretching vibrations. The infrared spectrum shows a broad spectral profile. Two Raman bands at 506 and 529 cm^?1 are assigned to the triply degenerate arsenate bending vibration (F ₂, ν₄), and the Raman bands at 325, 360, and 399 cm^?1 are attributed to the arsenate ν₂ bending vibration. Raman and infrared bands in the 2500–3800 cm^?1 spectral range are assigned to water and hydroxyl stretching vibrations. The application of Raman spectroscopy to study the structure of barahonaite is better than infrared spectroscopy, probably because of the much higher spatial resolution.     

Fourier Transform Infrared Spectroscopic Investigation of the Binary and Ternary Cyanide Adducts of the Oxidized Horseradish Peroxidase: Identification of a Second Stretching Mode for the Carbon-Nitrogen Bond of the Bound Cyanide Ion

The binary and ternary cyanide adducts of the ferric horseradish peroxidase were investigated by Fourier transform infrared spectroscopy. The carbon-nitrogen bond of the bound cyanide ion in the binary ferric cyanohorseradish peroxidase exhibits two stretching vibrations at 2130 cm^?1 and 2127 cm^?1 with the latter mode being observed in this work for the first time. This finding supports the results of the resonance Raman study of cyanohorseradish peroxidase, which identified two iron-carbon-nitrogen bending vibrations and two iron-carbon stretching vibrations, proving the existence of two conformational states. The identification of the latter carbon-nitrogen stretching frequency allowed the assignment of all of the vibrational modes of the iron-carbon-nitrogen groups of the two conformational states of the ferric cyanohorseradish peroxidase. The first conformer is characterized by a carbon-nitrogen stretch at 2130 cm^?1, an iron-carbon stretch at 453 cm^?1, and an iron-carbon-nitrogen bending mode at 405 cm^?1. The second state has a carbon-nitrogen stretch at 2127 cm^?1, an iron-carbon stretch at 360 cm^?1, and an iron-carbon-nitrogen bending mode at 422 cm^?1. The iron-carbon stretching band is weakly sensitive to pH changes, but it is sensitive to H₂O/D₂O substitution, indicating that the bound cyanide ion in cyanohorseradish peroxidase is hydrogen bonded to the surrounding protein. The two states were attributed to variation in the extent of hydrogen bonding of the iron-carbon-nitrogen groups in the two states. The carbon-nitrogen stretching vibrations of the ternary complexes of cyanohorseradish peroxidase with ferulic acid, benzamide, and benzhydroxamic acid have been investigated for the first time. The binding of the substrate to cyanohorseradish peroxidase does not always lead to the vanishing of one of the conformational states as in the carbon monoxide adducts of the ferrous horseradish peroxidase, but can cause shifts in the νC-N frequency and in the relative population of both conformational states.     

Deep UV resonance Raman spectroscopic study of CnF2n+2 molecules: the excitation of C–C σ bond

The σ–σ* transition of C–C bond in C_nF_2n+2 molecules was studied by deep UV resonance Raman spectroscopy. With the C–C σ bond selectively excited by the deep UV laser at 177.3 nm, the resonance Raman spectra of C_nF_2n+2 molecules were obtained on our home‐assembled deep UV Raman spectrograph. The Raman bands at 1299, 1380 and 2586 cm⁻¹ due to the C–C skeletal stretching modes are evidently enhanced owing to the resonance Raman effect. Based on the resonance Raman spectra and theoretical calculation results, it is proposed that the electronic geometry of C_nF_2n+2 molecules at the σσ* excited state is displaced along the directions perpendicular and parallel to the C–C skeleton, and the excited C–C bond is not dissociative due to the delocalization of the excited electron in σ* orbital. Copyright © 2012 John Wiley & Sons, Ltd.     

Vibrational Spectroscopic and Theoretical Studies of Urea Derivatives with Biochemical Interest: N,N′-Dimethylurea,N,N,N′,N′-Tetramethylurea,and N,N′-Dimethylpropyleneurea

Abstract

Mid-infrared, far-infrared, and Raman vibrational spectroscopic studies were combined with density functional theory (DFT) calculations and normal coordinate force field analyses for N,N′-dimethylurea (DMU), N,N,N′,N′-tetramethylurea (TMU), and N,N′-dimethylpropyleneurea (DMPU: IUPAC name 1,3-dimethyltetrahydropyrimidin-2(1H)-one). The equilibrium molecular geometry of DMU (all three conformers), TMU, and DMPU and the frequencies, intensities, and depolarization ratios of their fundamental infrared (IR) and Raman vibrational transitions were obtained by DFT calculations. The vibrational spectra were fully analyzed by normal coordinate methods as well. A starting force field for DMPU was obtained by adapting corresponding force constants for DMU and TMU, resulting after refinements in the stretching force constants C=O (7.69, 7.30, 7.68 N·cm^?1), C–N (5.16, 5.55, 5.05 N·cm^?1), and C-Me (5.93, 4.00, 4.22 N·cm^?1) for DMU, TMU, and DMPU, respectively. The dominating conformer of liquid DMU was identified as trans-trans, strong intermolecular hydrogen bonding was verified in solid DMU, and weak dipole–dipole association was found in liquid TMU and in DMPU. Special attention was paid to analyzing the methyl group frequencies, which revealed deviations from local C_3v symmetry. A linear correlation was found between the CH stretching force constants and the inverse of the CH bond lengths (1/r ²). The averaged NH stretching frequencies of gaseous, dissolved, and solid urea and of DMU, with variations for hydrogen bonding of different strength, are linearly correlated to the NH stretching force constants. Characteristic skeletal vibrations were assigned for a broad variety of urea derivatives and also for pyrimidine derivatives, which all contain the N₂C=O entity. The very strong IR bands of C=O stretching (1,676 ± 40 cm^?1) and asymmetric CN₂ stretching (1,478 ± 60 cm^?1), and the very intense Raman feature of symmetric CN₂ stretching or ring breathing (757 ± 80 cm^?1), can be recognized as fingerprint bands also for the pyrimidine derivatives cytosine, thymine, and uracil, which all are nucleobases in DNA and RNA nucleotides.     

Raman Spectroscopic Study of the Molybdate Mineral Szenicsite and Comparison with Other Paragenetically Related Molybdate Minerals

Abstract

The molybdate‐bearing mineral szenicsite, Cu₃(MoO₄)(OH)₄, has been studied by Raman and infrared spectroscopy. A comparison of the Raman spectra is made with those of the closely related molybdate‐bearing minerals, wulfenite, powellite, lindgrenite, and iriginite, which show common paragenesis. The Raman spectrum of szenicsite displays an intense, sharp band at 898 cm^?1, attributed to the ν₁ symmetric stretching vibration of the MoO₄ units. The position of this particular band may be compared with the values of 871 cm^?1 for wulfenite and scheelite and 879 cm^?1 for powellite. Two Raman bands are observed at 827 and 801 cm^?1 for szenicsite, which are assigned to the ν₃(E _g ) vibrational mode of the molybdate anion. The two MO₄ ν₂ modes are observed at 349 (B _g ) and 308 cm^?1 (A _g ). The Raman band at 408 cm^?1 for szenicsite is assigned to the ν₄(E _g ) band. The Raman spectra are assigned according to a factor group analysis and are related to the structure of the minerals. The various minerals mentioned have characteristically different Raman spectra.     

A Vibrational Spectroscopic Study of the Sulfate Mineral Glauberite

The mineral glauberite is one of many minerals formed in evaporite deposits. The mineral glauberite has been studied using a combination of scanning electron microscopy with energy dispersive X-ray analysis and infrared and Raman spectroscopy. Qualitative chemical analysis shows a homogeneous phase, composed by sulfur, calcium, and sodium. Glauberite is characterized by a very intense Raman band at 1002 cm^?1 with Raman bands observed at 1107, 1141, 1156, and 1169 cm^?1 attributed to the sulfate ν₃ antisymmetric stretching vibration. Raman bands at 619, 636, 645, and 651 cm^?1 are assigned to the ν₄ sulfate bending modes. Raman bands at 454, 472, and 486 cm^?1 are ascribed to the ν₂ sulfate bending modes. The observation of multiple bands is attributed to the loss of symmetry of the sulfate anion. Raman spectroscopy is superior to infrared spectroscopy for the determination of glauberite.     

Vibrational Spectrometry Strategies for Quality Control of Procymidone in Pesticide Formulations

Abstract

Two vibrational spectrometry–based methodologies were developed for procymidone determination in wettable powdered pesticide formulations. The Fourier‐transform infrared (FTIR) procedure was based on the selective extraction of procymidone by chloroform and determination by peak area measurement between 1451 and 1441 cm^?1, using a baseline correction established between 1490 and 1410 cm^?1, and a precision of 0.4% and a limit of detection of 0.01% w/w procymidone for a sample mass of 25 mg were obtained. For FT‐Raman determination, the selected conditions were peak area measurement between 1005 and 995 cm^?1 Raman shift, with a baseline correction fixed between 1030 and 947 cm^?1, and a relative standard deviation of 1% and a limit of detection of 0.8% procymidone in the original sample were obtained. The sample frequency for FTIR determination was 30 hr^?1, lower than that for Raman with 40 hr^?1. FT‐Raman reduces to the minimum the reagent consumption and waste generation, also avoiding the sample handling and contact of the operator with the pesticide. It can be concluded that the proposed methods are appropriate for quality control in commercial pesticide formulations.     

Vibrational spectroscopic characterization of the magnesium borate-phosphate mineral lüneburgite

ABSTRACT

Lüneburgite, a rare magnesium borate-phosphate mineral from Mejillones, Chile, has been characterized using Raman and mid-infrared spectroscopy methods. Boron tetrahedra are characterized by sharp Raman band at 877?cm^?1, attributed to the ν₁[BO₄]^5? symmetric stretching mode. The phosphate anion is associated with a distinct band at 1032?cm^?1, attributed to the ν₃[PO₄]^3? antisymmetric stretching mode. The most intensive Raman band at 734?cm^?1 is ascribed to stretching vibrations of bridging oxygen atoms in boron–oxygen–phosphor bridges. Bonds associated with water bending mode and stretching vibration are observed at 1661?cm^?1 (infrared) and in the 3000–3500?cm^?1 region (Raman and infrared spectrum).     

Structural Characterization of Aniline-Bentonite Composite by FTIR,DTA/TG,and PXRD Analyses and BET Measurement

ABSTRACT

The aniline species incorporated into the acid-activated bentonite matrices leads to the decay of the skeletal stretches centered at 1041 cm^?1 and the rise of new features in the phenyl ring frequency region, 1700–1400 cm^?1, demonstrates clearly the influence of the acid activation on the Lewis sites necessary for coordination of aniline to bentonite. The exothermic DTA features at 507, 684, and 725°C indicate the release of both the clusters and the decomposed fragments of the aniline-clay composite, and the highly stable carbonaceous residue, respectively. The basal difference by ～1.0 nm and the much smaller surface area (33.8 m²/g) than that of the nonintercalated bentonite (129.2 m²/g) prove the presence of the tilted aniline species between the interlamellar grooves of the bentonite framework.     

Discrimination of Poly(butylenes adipate-co-terephthalate) and Poly(ethylene terephthalate) with Fourier Transform Infrared Microscope and Raman Spectroscope

ABSTRACT

The analysis of plastics and fibers is of importance to forensic scientists, especially in the investigation of trace evidence. In this study, we use Fourier transform infrared microscope and confocal Raman spectroscope to investigate two kinds of polymers: poly(butylenes adipate-co-terephthalate) and poly(ethylene terephthalate), which are very similar in structure and cannot be discriminated easily with other instruments. Infrared and Raman spectra were tentatively interpreted. The indicative peaks (937 cm^?1, 1121 cm^?1 in Infrared spectra; 996 cm^?1, 1396 cm^?1 in Raman spectra) to distinguish the two polymers were also summarized. The data in this study can help forensic scientists identify these two polymers accurately and avoid wrong certificate of authenticity. The data also offer the producer and researchers an effective and fast method to characterize and identify the poly(butylenes adipate-co-terephthalate).     

Silicon negative ion implantation induced vacancy defects in thermally grown SiO2 thin films

ABSTRACT

Thermally grown SiO₂ thin films on a silicon substrate implanted with 100?keV silicon negative ions with fluences varying from 1?×?10¹⁵ to 2?×?10¹⁷ ions cm^?2 have been investigated using Electron spin resonance, Fourier transforms infrared and Photoluminescence techniques. ESR studies revealed the presence of non-bridging oxygen hole centers, E′-centers and P_b-centers at g-values 2.0087, 2.0052 and 2.0010, respectively. These vacancy defects were found to increase with respect to ion fluence. FTIR spectra showed rocking vibration mode, stretching mode, bending vibration mode, and asymmetrical stretching absorption bands at 460, 614, 800 and 1080?cm^?1, respectively. The concentrations of Si–O and Si–Si bonds estimated from the absorption spectra were found to vary between 11.95?×?10²¹ cm^?3 and 5.20?×?10²¹ cm^?3 and between 5.90?×?10²¹ cm^?3 and 3.90?×?10²¹ cm^?3, respectively with an increase in the ion fluence. PL studies revealed the presence of vacancies related to non-bridging oxygen hole centers, which caused the light emission at a wavelength of 720?nm.     

Raman Spectroscopic Analysis of Perovskite-Structured Alkali Metal Fluorides Containing Nickel and Copper Ions

ABSTRACT

The mixed metal fluorides containing alkali metals have a range of important applications in optical and electronic devices. Raman spectrums of two such fluorides were examined. Raman spectrum of KCuF₃ at 300 K exhibited bands at 261, 295, 363, 468, 519, and 549 cm^?1, indicating site symmetry (orthorhombic) lower than the tetragonal symmetry as observed from the powder X-ray diffraction pattern. Cubic KNiF₃ showed bands at 410, 468, and 657 cm^?1. The first two bands were attributed to the second-order phonon scattering, and the band at 657 cm^?1 was assigned to two-magnon peak.     

Vibrational spectroscopic study of the mineral penkvilksite Na 2TiSi 4O 11·2H 2O – a mineral used for the uptake of radionuclides

We have used vibrational spectroscopy to study the formula and molecular structure of the mineral penkvilksite Na ₂TiSi ₄O ₁₁·2H ₂O. Penkvilksite is a mineral which may be used in the uptake of radioactive elements. Both Raman and infrared spectroscopies identify a band at ～3638 cm^?1 attributed to an OH-stretching vibration of hydroxyl units. The inference is that OH units are involved in the structure of penkvilksite. The formula may be well written as Na ₂TiSi ₄O ₁₀(OH)₂·H ₂O. The mineral is characterised by a very intense Raman band at 1085 cm^?1 and a broad infrared band at 1080 cm^?1 assigned to SiO-stretching vibrations. Raman bands at 620, 667 and 711 cm^?1 are attributed to SiO and TiO chain bonds. Water-stretching vibrations are observed as Raman bands at 3197, 3265, 3425 and 3565 cm^?1. Vibrational spectroscopy enables aspects of the molecular structure of the mineral penkvilksite to be ascertained. Penkvilksite is a mineral which can incorporate actinides and lanthanides from radioactive waste.