Field ionization mass spectrometry—I. Nucleosides

The field ionization mass spectra of a series of nucleosides are reported, and compared with spectra obtained by conventional electron-impact ionization. The latter are complex, with structurally significant molecular ion and sugar cleavage peaks often of low intensity or completely absent. In contrast, the field ion spectra are extremely simple, with all except guanosine (highest mass peak [M — 18]) showing intense molecular ion peaks, and the characteristic sugar (S) and base (B + H) cleavage products as the only other important fragments.     

Field ionization mass spectrometry—II: Benzyloxycarbonyl and t-butyloxycarbonyl derivatives of some simple peptides

A brief discussion is given of some factors that merit consideration in the analysis of peptides by mass spectrometry, with emphasis on sequence determination. The first systematic study of simple peptides by field ionization (FI) is described, and comparison made with the corresponding electron-impact (EI) ionization spectra, both at low resolution (approx. 1500). The substances examined were either benzyloxycarbonyl or t-butyloxycarbonyl derivatives of di-through pentapeptide methyl esters, containing the amino acids glycine, alanine, leucine, serine, threonine, proline and tyrosine. The incidences of sequence-characteristic cleavage peaks and rearrangement ion peaks were both slightly lower in the FI than the EI spectra, although the peak relative intensities generally were higher under FI conditions.     

Chemical ionization mass spectrometry—XIX: n-hexane and n-octane as reactants

The suitability of n-hexane and n-octane as reactant gases in chemical ionization mass spectrometry has been investigated. The mass spectra of these substances have been investigated as a function of pressure up to 2·4 Torr for n-hexane and 1·7 Torr for n-octane. The major ion present in n-hexane at 0·8 Torr is [C₆H₁₃]⁺ (m/e 85) with a relative intensity of 0·65. In n-octane at 0·8 Torr the major ions are [C₈H₁₇]⁺ (m/e 113), [C₆H₁₃]⁺ (m/e 85) and [C₅H₁₁]⁺ (m/e 71). The relative intensities of these ions are 0·38, 0·12 and 0·19, respectively. These alkyl ions in both n-hexane and n-octane are thought to have tertiary structures. Rate constants for the rates of reaction of the primary ions in the two compounds have been determined. The n-hexane chemical ionization spectra of 26 compounds were determined. The spectra of polar compounds are dominated by proton transfer, whereas those of nonpolar compounds exhibit proton transfer and in addition often surprisingly large amounts of electron transfer. The n-octane chemical ionization spectra of 15 compounds were determined and the spectra in general are quite similar to those obtained with n-hexane. n-Hexane and n-octane can be used as reagents in analytical chemical ionization mass spectrometry, but except in certain specialized uses they would probably have no advantage over i-butane.     

Field-ionization mass spectrometry—fragmentation and metastables

Field-ionization (FI) mass spectrometry is an established method for obtaining abundant molecular ions¹ of a variety of compounds, and recently has been used in conjunction with exact mass measurements for determination of elemental compositions of molecules.^2,3 Very little, however, has been reported on the value of normal fragment ions and metastable ions appearing in the FI spectrum as a source of structural information.     

Chemical ionization mass spectrometry studies—VII: Deuterium labeled decanes

CI mass spectra of the five isomeric vicinal d₂-decanes have been recorded using methane and d₄-methane as reagent gases. In contrast to earlier suggestions, we find that a large fraction of the alkyl fragment ions from n-decane are formed by elimination of olefins from the abundant [M – 1] ion. Only the C₉ and C₈ fragment ions are produced completely by a one-step reaction between the decanes and the methane reagent ions. Isotope exchange does not occur between the hydrocarbon and the reagent ions derived from d₄-methane but extensive scrambling of the deuterium label in the d₂-decanes does take place in the [M – 1] ion.     

Negative ion chemical ionization mass spectrometry—binding of molecules to bromide and iodide anions

The analytical potential of negative ion chemical ionization (NICI) mass spectrometry utilizing dibromodifluoro-methane (CF₂Br₂) and iodomethane (CH₃I)/methane (CH₄) as reagent gases is examined. The NICI mass spectrum of CF₂Br₂ contains Br^?, [HBr₂]^? and [CF₂Br₃]^? anions. Weak acids (i.e. those acids with approximately ΔH°_(acid) values between 1674 and 1464 kJ mol^?1) react with Br^? to produce minor yields of the hydrogen?bonded bromide attachment [MH + Br]^? anion or are unreactive. Strong acids (i.e. those acids with approximately ΔH°_(acid) > 1464 kJ mol^?1) produce primarily [MH + Br]^? anions with a minor yield of proton transfer [M ? H]^? anion. The NICI spectrum of CH₃I/CH₄ is dominated by I^?. Weak acids react with I^? to yield minor amounts of [MH + 1]^? or are unreactive. Strong acids produce only [MH + l]^? anions. From a consideration of the gas-phase basicity of the halide anion and the binding energy of the hydrogen-bonded halide attachment adduct, thermochemical data are used as a potential guide to rationalize or predict the ions observed in NICI mass spectra.     

Native mass spectrometry—A valuable tool in structural biology

Proteins and the complexes they form with their ligands are the players of cellular action. Their function is directly linked with their structure making the structural analysis of protein‐ligand complexes essential. Classical techniques of structural biology include X‐ray crystallography, nuclear magnetic resonance spectroscopy and recently distinguished cryo‐electron microscopy. However, protein‐ligand complexes are often dynamic and heterogeneous and consequently challenging for these techniques. Alternative approaches are therefore needed and gained importance during the last decades. One alternative is native mass spectrometry, which is the analysis of intact protein complexes in the gas phase. To achieve this, sample preparation and instrument conditions have to be optimised. Native mass spectrometry then reveals stoichiometry, protein interactions and topology of protein assemblies. Advanced techniques such as ion mobility and high‐resolution mass spectrometry further add to the range of applications and deliver information on shape and microheterogeneity of the complexes. In this tutorial, we explain the basics of native mass spectrometry including sample requirements, instrument modifications and interpretation of native mass spectra. We further discuss the developments of native mass spectrometry and provide example spectra and applications.     

High resolution mass spectrometry—I. Some substituted δ-lactones

The mass spectra of some δ-lactones substituted in various positions by methyl groups have been studied both by accurate mass measurements at high resulution and by deuterium labelling. The loss of carbon dioxide has been shown to be important only for a mono-substituted lactone. A fragmentation mode common to all the lactones studied is the elimination of the ring oxygen atom, plus the adjacent carbon atom with its substituents, as a neutral carbonyl molecule such as formaldehyde, acetaldehyde or acetone. Deuterium labelling has uncovered the existence of a rearrangement involving hydrogen transfer in an even-electron ion, and a mechanism involving a six-membered transition state is proposed for this. The bond fissions, common to all the lactones, by which the principal ions in the mass spectra arise, are summarised.     

Kinetic studies in mass spectrometry—IV. The [M — Cl] reaction in substituted chlorobenzenes and the question of molecular ion isomerization.

The [M]⁺˙ → [M ? Cl]⁺ reaction in a series of m- and p-X substituted chlorobenzenes has been studied, utilizing a simple kinetic approach, comparison of metastable ion relative abundances, and by measurement of ionization and appearance potentials. All evidence obtained is consistent with rearrangement prior to cleavage in the molecular ions, in which substituent position becomes effectively randomized. These findings are related to known hydrogen randomization reactions occurring in either the molecular ion or [M ? Cl] ion of chlorobenzenes. Mechanisms involving carbon scrambling via such species as ionized benzvalenes or prismanes, or ring-opening to isomeric acyclic molecular ions in which hydrogen randomization might occur can be entertained, but mechanisms involving simple hydrogen shifts in the intact benzene ring appear less likely.     

High resolution field desorption mass spectrometry—I: Nucleosides and nucleotides

The first complete high resolution (HR) field desorption (FD) mass spectra (MS) are presented and constitute a helpful tool in the structure elucidation of biologically significant compounds. This is especially relevant for the determination of the molecular weight of substances with very low volatilities which suffer from thermal decomposition when evaporated into the ion source. An additional advantage is the very small sample consumption (in the submicrogram range). Further improvements in the ion production method are the introduction of high temperature activated emitters and a specially designed micromanipulator for optimal adjustment of the field anodes. These enabled values of mass resolution between 15000 and 25000 (10% valley definition) to be achieved when vacuum evaporated Ag Br plates were used for photographic recording.     

Negative ion mass spectrometry—I: The spectra of some stabilised alkylidenetriphenyl-phosphoranes

The 70 eV negative ion mass spectra of a series of phosphoranes exhibit significant peaks for ions resulting from skeletal rearrangements. The primary fragmentation reactions of the molecular anions, which involve reduction of the phosphorus from the penta- to the ter-valent state, have been rationalised in terms of the relative stabilities of the products formed. The processes occurring are in some cases analogous to and in other cases complementary to, those previously observed in the positive ion spectra of similar compounds.     

Chemical ionization mass spectrometry with amines as reactant gases. V—Amine chemical ionization mass spectrometry of flavonoid glycosides

The chemical ionization mass spectra of flavonoid glycosides (O-glycosides, C-glycosides and acetylated glycosides) have been investigated. Triethylamine, ethylenediamine, diethylamine, methylamine and ammonia were used as reactant gases. The fragmentation mechanism is discussed, and the perspectives for establishing the molecular weights of glycosides, aid the nature of both the sugar residue and the aglycone, are outlined.     

Chemical ionization mass spectrometry with amines as reactant gases. I—amine chemical ionization mass spectrometry of flavonoid aglycones

Chemical ionization mass spectrometry of 34 flavones, isoflavones, flavanones, chalcones and aurones with aliphatic amines and ammonia as reactant gases have been investigated. Some unusual ions have been obtained and are discussed. This method can be used to determine the type of flavonoid and the location of some functional groups in the molecule.     

Peptides investigated by laser desorption—multiphoton ionization mass spectrometry

Laser evaporation of intact neutral molecules into a supersonic beam combined with multiphoton ionization (MUPI) is used to study the fragmentation behaviour of peptides. Owing to the separation of desorption and ionization, an optimization of these processes can be applied to the sample. The investigation of mixtures containing hydrophobic and hydrophilic peptides shows equal probabilities for detection of the two molecules, demonstrating that the neutral yield of both classes of compound is equal in the desorption process. A loss of sensitivity is not observed. By employing the feature of tunable fragmentation, it is possible to sequence peptides in the gas phase. At low laser intensities only the molecular ions are formed. By increasing photon intensities, fragmentation reactions are induced. Owing to the nature of the multiphoton ionization, these mass spectra (at moderate laser powers) contain few and only structurally dependent signals. The molecular ion of the sample investigated is detected in every case.     

Studies in organic mass spectrometry—VI. The fragmentation of enol derivatives of acyclic β-diketones

The mass spectra of enol derivatives of β-diketones, such as enol ethers and enaminies are discussed. Their behaviour under electron-impact is in accordance with the fragmentation we suggested for an acyclic β-diketone in the enol form. Rearrangement of the enol functional group is observed in the spectra. This process is a general one, as it show not only migration of oxygen and nitrogen in the enol ethers and enamines, but also migeration of sulphur and chlorine in the thio-ether and in 4-chloro-3-pentene-2-one. Enol derivatives are suitable compounds for determining the branching of alkyl chains in β-diketones.     

Field ionization mass spectrometry of carbohydrates

It is shown that FI mass spectra can serve to elucidate some structural features and determine the molecular weights of mono- and oligosaccharides.     

Capillary electrophoresis—matrix-assisted laser-desorption ionization mass spectrometry of proteins

An “off-line” combination of capillary electrophoresis (CE) with matrix-assisted laser-desorption mass spectrometry (MALDI-MS) has been developed for the structural characterization of CE-separated peptides and proteins. Using a sheath flow interface, similar to that developed for “on-line” CE—fast atom bombardment MS and CE—electrospray MS, an efficient sample isolation procedure has been developed which is applicable to bioorganic compounds in aqueous buffer solutions. This isolation procedure, with subsequent transfer to the MALDI-MS sample target, has been successfully used for the direct analysis of CE-separated proteins of M _r up to 67 000, and a mixture of apolipoprotein AII monomer and homodimer, using sample amounts of less than 1 pmol.     

High resolution mass spectrometry—III: Loss of water from a nitro compound under electron-impact

Deuterium labelling has been utilised to elucidate the mechanism by which a molecule of water is eliminated from a heterocyclic nitro compound under electron-impact.