(Studies on AI-77s,microbial products with pharmacological activity) structures and the chemical nature of AI-77s

The structures of a novel gastroprotective substance AI-77-B and its analogues AI-77-C, D, F and G, which are produced by Bacillus pumilus, are described. Five of the asymmetric centers of AI-77-B have S absolute stereochemistry confirmed by X-ray in combination with chemical studies.     

Total synthesis of AI-77-B

A new stereoselective approach for the synthesis of AI-77-B has been described. Dihydroisocoumarin fragment was made in two routes using Heck reaction followed by oxidation of the olefin and LDA mediated reaction. The chiral amino acid moiety has been obtained from d-ribose involving Grignard reaction on ribosylimine. Finally, condensation of dihydroisocoumarin with acid fragment furnished the title target AI-77-B.     

Studies on AI-77s,microbial products with gastroprotective activity. Structures and the chemical nature of AI-77s

The structures and the chemical nature of a novel gastroprotective substance AI-77-B (1) and its analogues AI-77-C (2), D (3), F (4) and G (5), which are produced by Bacillus pumilus AI-77, are described. The structure of 1 was confirmed to be 6-[[1(S)-(3(S), 4-dihydro-8-hydroxy-1-oxo-1H-2-benzopyran-3-yl)-3-methylbutyl]amino]-4(S),5(S)-dihydroxy-6-oxo-3(S)-aminohexanoic acid by X-ray in combination with chemical studies and the structures of 2, 3, 4 and 5 were determined by chemical syntheses from 1 and spectral analyses.     

An unexpected switch in the modulation of AI-2-based quorum sensing discovered through synthetic 4,5-dihydroxy-2,3-pentanedione analogues

Quorum sensing (QS) has traditionally referred to a mechanism of communication within a species of bacteria. However, emerging research implicates QS in interspecies communication and competition, and such systems have been proposed in a wide variety of bacteria. The AI-2-based QS system represents the most studied of these proposed interspecies systems, and has been proposed to regulate diverse functions such as bioluminescence, expression of virulence factors, and biofilm formation. As such, the development of modulatory compounds, both agonists and antagonists, is of great interest for the treatment of bacterial infections and the study of unknown AI-2-based QS systems. Toward this end, we have designed and synthesized a panel of 4,5-dihydroxy-2,3-pentanedione/AI-2 analogues and evaluated their effects on the AI-2 QS of various bacteria. The panel of compounds exhibited differential effects in the bacterial cell lines examined, providing a platform for the development of broad-spectrum modulators of AI-2-based QS.     

Stereoselective synthesis of the hydroxy amino acid moiety of Al-77-B,a gastroprotective substance from Bacillus pumilus Al-77

The hydroxy amino acid moiety of Al-77-B (1) has been prepared as its protected form 2 from the (R)-glyceric acid derivative 3 in an efficiently stereoselective manner through the direct C-acylation using diphenyl phosphorazidate and the hydroxy-directed hydrogenation.     

A multivalent probe for AI-2 quorum-sensing receptors

Multivalency is a common principle in the recognition of cellular receptors, and multivalent agonists and antagonists have played a major role in understanding mammalian cell receptor biology. The study of bacterial cell receptors using similar approaches, however, has lagged behind. Herein we describe our efforts toward the development of a dendrimer-based multivalent probe for studying AI-2 quorum-sensing receptors. From these studies, we have discovered a chemical probe specific for Lsr-type AI-2 quorum-sensing receptors with the potential for enabling the identification of new bacterial species that utilize AI-2 as a quorum-sensing signaling molecule.     

Effect of Various High-Octane Additives on Antiknock Quality of Gasolines

The possibility of manufacturing AI-92 and AI-95 high-octane blended gasolines using reformer naphthas¹, methyl tert-butyl ether, and an additive based on N-methylaniline and (methylcyclopentadienyl)manganese tricarbonyl is studied.     

C4-Alkoxy-HPD: A Potent Class of Synthetic Modulators Surpassing Nature in AI-2 Quorum Sensing

Bacteria have developed cell-to-cell communication mechanisms, termed quorum sensing (QS), that regulate bacterial gene expression in a cell population-dependent manner. Autoinducer-2 (AI-2), a class of QS signaling molecules derived from (4S)-4,5-dihydroxy-2,3-pentanedione (DPD), has been identified in both Gram-negative and Gram-positive bacteria. Despite considerable interest in the AI-2 QS system, the biomolecular communication used by distinct bacterial species still remains shrouded. Herein, we report the synthesis and evaluation of a new class of DPD analogues, C4-alkoxy-5-hydroxy-2,3-pentanediones, termed C4-alkoxy-HPDs. Remarkably, two of the analogues were more potent QS agonists than the natural ligand, DPD, in Vibrio harveyi. The findings presented extend insights into ligand-receptor recognition/signaling in the AI-2 mediated QS system.     

Analysing traces of autoinducer-2 requires standardization of the <Emphasis Type="Italic">Vibrio harveyi</Emphasis> bioassay

Autoinducer-2 (furanosyl borate diester) is a biologically active compound whose role as a universal bacterial signalling molecule is currently under intense investigation. Because of its instability and the low concentrations of it found in biological samples, its detection relies at present on a bioassay that measures the difference in the timing of the luminescence of the Vibrio harveyi BB170 sensor strain with and without externally added AI-2. Here we systematically investigated which parameters affected the fold induction values of luminescence obtained in the bioassay and developed a modified protocol. Our experiments showed that growth and luminescence of V. harveyi BB170 are strongly influenced by trace elements. In particular, addition of Fe³⁺ within a certain concentration range to the growth medium of the preinoculum culture improved the reproducibility and reduced the variance of the bioassay. In contrast, trace elements and vitamins introduced directly into the bioassay caused inhibitory effects. The initial density and luminescence of the sensor strain are very important and the values required for these parameters were defined. Borate interferes with the detection of AI-2 by giving false positive results. The response of V. harveyi BB170 to chemically synthesized AI-2 in the bioassay is nonlinear except over a very small concentration range; it is maximum over three orders of magnitude and shows inhibition above 35 μM. Based on the modified protocol, we were able to detect AI-2 in the absence of inhibitors with maximum fold induction values for the positive control (chemically synthesized AI-2) of >120 with a standard deviation of ~30% in a reliable and reproducible way.     

Boron binding with the quorum sensing signal AI-2 and analogues

[reaction: see text] The unstable bacterial metabolic product, DPD, and the related natural product, laurencione, are shown to have a high affinity for borate complexation, through the hydrated analogue. The boron complex of DPD is Vibrio harveyi AI-2, an interspecies quorum sensing signal in bacteria, and an affinity column with a borate resin is effective in providing the first method for concentrating and purifying V. harveyi AI-2 from the biosynthetic product.     

Optimization of the Lennard-Jones parameters for a combined ab initio quantum mechanical and molecular mechanical potential using the 3-21G basis set

A combined ab initio quantum mechanical and molecular mechanical (AI-QM/MM) potential for use in molecular modeling and simulation has been described. In this article, we summarize a procedure for deriving the empirical parameters embedded in a combined QM/MM model and suggest a set of Lennard-Jones parameters for the combined ab initio 3-21G and MM OPLS-TIP3P (AI-3/MM) potential. Interaction energies and geometrical parameters predicted with the AI-3/MM model for over 80 hydrogen-bonded complexes of organic compounds with water were found to be in good accord with ab initio 6-31G(d) results. We anticipate that the AI-3/MM potential should be reasonable for use in condensed phase simulations. © 1996 by John Wiley & Sons, Inc.     

Total Synthesis of the Gastroprotective Substance AI-77-B and of Analogues

The Diels-Alder adducts 8 of furan to 1-cyanovinyl acetate were converted into (Methyl 3-chloro)-5-O-(3-chlorobenzoyl)-2, 3-dideoxy-α-dl-arabino-hexofuranosid)uronic acid ((α)- 18a ) and into (methyl 3-azido-5-O-(3-chlorobenzoyl_-2,3-dideoxy-α-dl-ribo-hexofuranosid)uronic acid ((α)- 41a ). These compounds were condensed to (3S)-3-[(1′S)-1′-amino-3′-methylbutyl]-3,4-dihydro-8-hydroxyisocoumarin hydrochloride ((?)- 2 ); the resulting mixtures of diastereoisomeric amides were transformed and separated to give the gastroprotective substance AI-77- B ((?)- 1 ) and analogues.     

Probing autoinducer-2 based quorum sensing: the biological consequences of molecules unable to traverse equilibrium states

Bacteria have developed a cell-to-cell communication system, termed quorum sensing (QS), which allows for the population-dependent coordination of their behavior via the exchange of chemical signals. Autoinducer-2 (AI-2), a class of QS signals derived from 4,5-dihydroxy-2,3-pentandione (DPD), has been revealed as a universal signaling molecule in a variety of bacterial species. In spite of considerable interest, the study of putative AI-2 based QS systems remains a challenging topic in part due to the rapid interconversion between the linear and cyclic forms of DPD. Herein, we report the design and development of efficient syntheses of carbocyclic analogues of DPD, which are locked in the cyclic form. The synthetic analogues were evaluated for the modulation of AI-2-based QS in Vibrio harveyi and Salmonella typhimurium. No agonists were uncovered in either V. harveyi or S. typhimurium assay, whereas weak to moderate antagonists were found against V. harveyi. On the basis of NMR analyses and DFT calculations, the heterocyclic oxygen atom within DPD appears necessary to promote hydration at the C3 position of cyclic DPD to afford the active tetrahydroxy species. These results also shed light on the interaction between the heterocyclic oxygen atom and receptor proteins as well as the importance of the linear form and dynamic equilibrium of DPD as crucial requirements for activation of AI-2 based QS circuits.     

Ab initio QM/MM molecular dynamics study on the excited-state hydrogen transfer of 7-azaindole in water solution

Ab initio molecular dynamics (AIMD) simulations for the excited-state hydrogen transfer (ESHT) reaction of 7-azaindole (7AI-(H2O)n; n = 1, 2) clusters in the gas phase and in water are presented. The effective fragment potential (EFP) is employed to model the surrounding water molecules. The AIMD simulations for 7AI-H2O and 7AI-(H2O)2 clusters show an asynchronous hydrogen transfer at t approximately 50 fs after the photoexcitation. While the ESHT mechanism for 7AI-H2O in water does not change appreciably compared with that in the gas phase, the AIMD simulations on 7AI-(H2O)2 in water solution exhibit two different mechanisms. Since the tautomer form is lower in energy compared to the normal form in the S1 state, 7AI and (H2O) n fragments separate from each other after the ESHT. With the use of the results of the AIMD trajectories, the minimum energy conical intersection point in the tautomer region has also been located.     

Theoretical studies on novel main group metallocene-like complexes involving planar hexacoordinate carbon eta6-B6C2- ligand

The geometric structures for a novel series of main group 1 and 2 metal atom complexes with planar hexacoordinate carbon dianion (eta6-B6C)2- ligand, involving metallocene-like, K[(eta6-B6C)Ca]n(eta6-B6C)K (n = 1-3) and [(eta6-B6C)Ca]n(eta6-B6C)2- (n = 1, 2), as well as relative pyramidal [(eta6-B6C)M]i- (M = Na, K, and CaCl, i = 1; M = Ca, i = 0) and bipyramidal (eta6-B6C)(CaCl)2, have been optimized to be the local minima on the corresponding potential hypersurfaces at the B3LYP/6-311+G(d) level of theory. Natural bond orbital analysis indicates that the electrostatic interaction between the metal ions and the planar hexacoordinate carbon B6C2- rings plays a crucial role in stabilizing these highly symmetrical complexes. The pi-d interaction in Ca-containing complexes also plays an important role in the stabilization of these molecules. It is found that the Ca2+ cation could be considered the best candidate for (eta6-B6C)2- to build ionic organometallic compounds. In these predicted multideck metallocene-like complexes there exist similarities in many structural properties, such as geometry parameters, Wiberg bond indices, natural atomic charges, atomic electronic configurations, and frontier orbital energies, as well as increments of the dissociation energy (to -[(eta6-B6C)Ca]- units and metal cations) for adding one -[(eta6-B6C)Ca]- unit and so on, which suggests that the -[(eta6-B6C)Ca]- unit could be used as a building block to construct more K[(eta6-B6C)Ca]n(eta6-B6C)K chain-type metallocene-like complexes along their sixfold molecular axis.     

Bolaamphiphiles bearing bipyridine as mesogenic core: rational exploitation of molecular architectures for controlled self-assembly

A bolaamphiphile (5,5-B2NBr8) bearing a functional bipyridine moiety as the mesogenic core is reported for the first time. 5,5-B2NBr8 was found to self-assemble into uniform fibrous structure in aqueous solution, when the concentration was higher than cmc. Analogues of 5,5-B2NBr8 with structural differences in chain length, headgroup, mesogenic core, and substituted position were synthesized, elucidating that small variances of the molecular structure could lead to dramatic changes of the resulting assemblies. For example, compound 4,4-B2NBr8 showed only spherical colloidal aggregates rather than fibers as 5,5-B2NBr8 did, while the only difference between them was the position at which the alkyl chains were attached onto bipyridine. A probable model for the fibrous structure of 5,5-B2NBr8 was proposed. Moreover, exploiting the coordination capacity of bipyridine, assembly and disassembly of 5,5-B2NBr8 could be reversibly controlled through the addition of EDTA and Cu(II), respectively.     

Recovery of solketal from reaction products by extraction

The extraction of solketal from aqueous glycerol with AI-92 gasoline, toluene, hexane, and 1-hexene was studied. Aromatic compounds and mixtures containing them exhibit the best extracting properties. A flowsheet was suggested for recovering solketal from reaction products by extraction.     

Synthesis of high-density nanocavities inside TiO2-B nanoribbons and their enhanced electrochemical lithium storage properties

Single crystalline TiO2-B nanoribbons with high-density nanocavities were successfully synthesized via a simple hydrothermal route. The as-prepared TiO2-B nanoribbons exhibited a large Brunauer, Emmett, and Teller (BET) surface area of about 305 m(2)/g because of the high-density nanocavities inside the thin nanoribbons. Electrochemical measurements indicated that the TiO2-B nanoribbons with dense nanocavities showed discharge specific capacity higher than those of TiO2-B nanotubes and nanowires. It was found that the dense nanocavities have an important influence on the electrochemical lithium intercalation properties.     

Photoelectrochemical study on charge transfer properties of TiO2-B nanowires with an application as humidity sensors

One-dimensional (1-D) TiO2-B nanowires have been synthesized via a facile solvothermal route. The morphology and crystalline structures of the nanowires were characterized by using powder X-ray diffraction, low/high-resolution transmission electron microscopy, and Brunauer-Emmett-Teller methods. It is important with the calcination treatment at 350 degrees C to maintain 1-D morphologies of the material in the form of single-crystalline TiO2-B nanowires. In addition, a simple method was used to study the photogenerated charge transfer and photoelectrochemical properties of the TiO2-B nanowires in comparison with commercial TiO2 P25 nanoparticles based on the experimental data from the electric field-effected photocurrent action spectrum and Mott-Schottky measurements. It was revealed that TiO2-B nanostructures played an important role in the photoelectrochemical processes. The synthetic TiO2-B nanowire electrode exhibited unique electronic properties, e.g., favorable charge-transfer ability, negative-shifted appearing flat-band potential, existence of abundant surface states or oxygen vacancies, and high-level dopant density. Moreover, the obtained TiO2-B nanowires were found to display excellent humidity sensing abilities as functional materials in the humidity sensor application. With relative humidity increased from 5% to 95%, about one and half orders of magnitude change in resistance was observed in the TiO2-B nanowire-based surface-type humidity sensors.     

Reactivity of the Ni-->B dative sigma-bond in the nickel boratrane compounds [kappa4-B(mimBut)3]NiX (X=Cl, OAc, NCS, N3): synthesis of a series of B-functionalized tris(2-mercapto-1-tert-butylimidazolyl)borato complexes, [YTmBut)]NiZ

The nickel boratrane complexes [kappa4-B(mimBut))3]Ni(kappa1-OAc), [kappa4-B(mimBut)3]NiNCS and [kappa4-B(mimBut)3]NiN3 are obtained via metathesis of the chloride ligand of [kappa4-B(mimBut)3]NiCl with TlOAc, KSCN and NaN3, respectively; the Ni-->B bond in these complexes is a site of reactivity, thereby providing a means of synthesizing nickel complexes that feature B-functionalized tris(mercaptoimidazolyl)borate derivatives, [YTmBut]NiZ.