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1.
The phenyl radical (C6H5.) is the prototypical σ‐type aryl radical and one of the most common aromatic building blocks for larger ring molecules. Using a combination of rotational spectroscopy of singly substituted isotopic species and vibrational corrections calculated theoretically, an extremely accurate molecular structure has been determined. Relative to benzene, the phenyl radical has a substantially larger C‐Cipso‐C bond angle [125.8(3)° vs. 120°], and a shorter distance [2.713(3) Å vs. 2.783(2) Å] between the ipso and para carbon atoms.  相似文献   

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1,1‐Dilithioethylene is a prototypical carbon–lithium compound that is not known experimentally. All low‐lying singlet and triplet structures of interest were investigated by using high‐level theoretical methods with correlation‐consistent basis sets up to pentuple ζ. The coupled cluster methods adopted included up to full triple excitations and perturbative quadruples. In contrast to earlier studies that predicted the twisted C2v triplet to be the ground state, we found a peculiar planar Cs singlet ground state in the present research. The lowest excited electronic state of 1,1‐dilithioethylene, the twisted Cs triplet, was found to lie 9.0 kcal mol?1 above the ground state by using energy extrapolation to the complete basis set limit. For the planar Cs singlet and twisted Cs triplet states of 1,1‐dilithioethylene, anharmonic vibrational frequencies were reported on the basis of second‐order vibrational perturbation theory. The remarkably low (2050 cm?1) C?H stretching fundamental (the C?H bond near the bridging lithium) of the singlet state was found to have very strong infrared intensity. These highly reliable theoretical findings may assist in the long‐sought experimental identification of 1,1‐dilithioethylene. Using natural bond orbital analysis, we found that lithium bridging structures were strongly influenced by electrostatic effects. All carbon–carbon linkages corresponded to conventional double bonds.  相似文献   

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As the biological activation and oxidation of water takes place at an inorganic cluster of the stoichiometry CaMn4O5, manganese oxide is one of the materials of choice in the quest for versatile, earth‐abundant water splitting catalysts. To probe basic concepts and aid the design of artificial water‐splitting molecular catalysts, a hierarchical modeling strategy was employed that explores clusters of increasing complexity, starting from the tetramanganese oxide cluster Mn4O4+ as a molecular model system for catalyzed water activation. First‐principles calculations in conjunction with IR spectroscopy provide fundamental insight into the interaction of water with Mn4O4+, one water molecule at a time. All of the investigated complexes Mn4O4(H2O)n+ (n=1–7) contain deprotonated water with a maximum of four dissociatively bound water molecules, and they exhibit structural fluxionality upon water adsorption, inducing dimensional and structural transformations of the cluster core.  相似文献   

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We investigated the regions of thermodynamic stability of possible modifications of the alkali metal halides as a function of pressure and type of alkali metal and halogen. Both Hartree–Fock and density functional calculations (for six different functionals) were performed. The results are in good agreement with experiment, and the trends in the computed quantities such as transition pressures and lattice parameters as a function of the ab initio method are similar to those found in earlier studies of the alkali metal sulfides. We predict that in most of these systems the so‐called 5–5 modification should be metastable at standard pressure and be thermodynamically stable at slightly negative pressures. The sizes of the pressure ranges over which the various modifications are stable showed characteristic trends as a function of the type of the constituent elements, thus generalizing the traditional pressure–homologue rule for transition pressures and stable phases in ionic solids.  相似文献   

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The asymmetric catalysis of the intramolecular enone [2+2] photocycloaddition has been subject of extensive experimental studies, however theoretical insight to its regulatory mechanism is still sparse. Accurate quantum chemical calculations at the CASPT2//CASSCF level of theory associated with energy‐consistent relativistic pseudopotentials provide a basis for the first regulation theory that the enantioselective reaction is predominantly controlled by the presence of relativistic effects, that is, spin–orbit coupling resulting from heavy atoms in the chiral Lewis acid catalyst.  相似文献   

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The “curly arrow” of Robinson and Ingold is the primary tool for describing and rationalizing reaction mechanisms. Despite this approach’s ubiquity and stellar success, its physical basis has never been clarified and a direct connection to quantum chemistry has never been found. Here we report that the bond rearrangements expressed by curly arrows can be directly observed in ab initio computations, as transformations of intrinsic bond orbitals (IBOs) along the reaction coordinate. Our results clarify that curly arrows are rooted in physical reality—a notion which has been challenged before—and show how quantum chemistry can directly establish reaction mechanisms in intuitive terms and unprecedented detail.  相似文献   

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Long‐range pseudo‐contact NMR shifts (PCSs) provide important restraints for the structure refinement of proteins when a paramagnetic metal center is present, either naturally or introduced artificially. Here we show that ab initio quantum‐chemical methods and a modern version of the Kurland–McGarvey approach for paramagnetic NMR (pNMR) shifts in the presence of zero‐field splitting (ZFS) together provide accurate predictions of all PCSs in a metalloprotein (high‐spin cobalt‐substituted MMP‐12 as a test case). Computations of 314 13C PCSs using g‐ and ZFS tensors based on multi‐reference methods provide a reliable bridge between EPR‐parameter‐ and susceptibility‐based pNMR formalisms. Due to the high sensitivity of PCSs to even small structural differences, local structures based either on X‐ray diffraction or on various DFT optimizations could be evaluated critically by comparing computed and experimental PCSs. Many DFT functionals provide insufficiently accurate structures. We also found the available 1RMZ PDB X‐ray structure to exhibit deficiencies related to binding of a hydroxamate inhibitor. This has led to a newly refined PDB structure for MMP‐12 (5LAB) that provides a more accurate coordination arrangement and PCSs.  相似文献   

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Cyclobutane‐1,2,3,4‐tetraone, (CO)4, was computationally predicted and, subsequently, experimentally confirmed to have a triplet ground state, in which a b2g σ MO and an a2u π MO were each singly occupied. In contrast, the (U)CCSD(T) calculations reported herein found that cyclobutane‐1,2,3,4‐tetrathione, (CS)4, and cyclobutane‐1,2,3,4‐tetraselenone, (CSe)4, both had singlet ground states, in which the b2g σ MO was doubly occupied and the a2u π MO was empty. Our calculations showed that both the longer C?X distances and smaller coefficients on the carbon atoms in the b2g and a2u MOs of (CS)4 and (CSe)4 contributed to the difference between the ground states of these two molecules and the ground state of (CO)4. An experimental test of the prediction of a singlet ground state for (CS)4 is proposed.  相似文献   

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We report evidence of the favorable noncovalent interaction between a covalently bonded atom of Group 18 (known as noble gases or aerogens) and a negative site, for example, a lone pair of a Lewis base or an anion. It involves a region of positive electrostatic potential (σ‐hole), therefore it is a totally new and unexplored σ‐hole‐based interaction, namely aerogen bonding. We demonstrate for the first time the existence of σ‐hole regions in aerogen derivatives by means of high‐level ab initio calculations. In addition, several crystal structures retrieved from the Cambridge Structural Database (CSD) give reliability to the calculations. Energetically, aerogen bonds are comparable to hydrogen bonds and other σ‐hole‐based interactions but less directional. They are expected to be important in xenon chemistry.  相似文献   

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The potential energy surfaces of the HCl(H2O)n (n is the number of water molecules) clusters are systematically explored using density functional theory and high‐level ab initio computations. On the basis of electronic energies, the number of water molecules needed for HCl dissociation is four as reported by some experimental groups. However, this number is five owing to the inclusion of entropic factors. Wiberg bond indices are calculated and analyzed, and the results provide a quadratic correlation and classification of clusters according to the nondissociated, partially dissociated, and fully dissociated character of the H?Cl bond. Our computations show that if temperature is not controlled during the experiment, the values obtained for the dipole moment (or for any measurable property) are susceptible to change, providing a different picture of the number of water molecules needed for HCl dissociation in a nanoscopic droplet.  相似文献   

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The molecular‐beam Fourier transform microwave spectrum of 2‐acetyl‐5‐methylfuran is recorded in the frequency range 2–26.5 GHz. Quantum chemical calculations calculate two conformers with trans or cis configuration of the acetyl group, both of which are assigned in the experimental spectrum. All rotational transitions split into quintets due to the internal rotations of two nonequivalent methyl groups. By using the program XIAM, the experimental spectra can be simulated with standard deviations within the measurement accuracy, and yield well‐determined rotational and internal rotation parameters, inter alia the V3 potentials. Whereas the V3 barrier height of the ring‐methyl rotor does not change for the two conformers, that of the acetyl‐methyl rotor differs by about 100 cm?1. The predicted values from quantum chemistry are only on the correct order of magnitude.  相似文献   

16.
Vibrational circular dichroism (VCD) spectroscopy is utilized to reveal the detailed conformational distributions of the dominant serine species in aqueous solutions under three representative pH conditions of 1.0, 5.7, and 13.0, together with vibrational absorption (VA) spectroscopy, density functional theory (DFT), and molecular dynamics simulation. The experimental VA and VCD spectra of serine in H2O and D2O in the fingerprint region under three pH values are obtained. DFT calculations at the B3LYP/6‐311++G(d,p) level are carried out for the protonated, zwitterionic, and deprotonated serine species. The lowest‐energy conformers of all three species are identified and their corresponding VA and VCD spectra simulated. A comparison between the gas‐phase simulations and the experimental VA and VCD spectra suggests that one or two of the most stable conformers of each species contribute predominantly to the observed data, although some discrepancies are noted. To account for the solvent effects, both the polarizable continuum model and the explicit solvation model are considered. Hydrogen‐bonded protonated, zwitterionic, and deprotonated serine–(water)6 clusters are constructed based on radial distribution function analyses and molecular dynamics snapshots. Geometry optimization and VA and VCD simulations are performed for these clusters at the B3LYP/6‐311++G(d,p) level. Inclusion of the explicit water molecules is found to improve the agreement between theory and experiment noticeably in all three cases, thus enabling conclusive conformational distribution analyses of serine in aqueous solutions directly.  相似文献   

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Gas phase reactions between PtHn? cluster anions and CO2 were investigated by mass spectrometry, anion photoelectron spectroscopy, and computations. Two major products, PtCO2H? and PtCO2H3?, were observed. The atomic connectivity in PtCO2H? can be depicted as HPtCO2?, where the platinum atom is bonded to a bent CO2 moiety on one side and a hydrogen atom on the other. The atomic connectivity of PtCO2H3? can be described as H2Pt(HCO2)?, where the platinum atom is bound to a formate moiety on one side and two hydrogen atoms on the other. Computational studies of the reaction pathway revealed that the hydrogenation of CO2 by PtH3? is highly energetically favorable.  相似文献   

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