De Novo 3D Structure Determination from Sub‐milligram Protein Samples by Solid‐State 100 kHz MAS NMR Spectroscopy

Solid‐state NMR spectroscopy is an emerging tool for structural studies of crystalline, membrane‐associated, sedimented, and fibrillar proteins. A major limitation for many studies is still the large amount of sample needed for the experiments, typically several isotopically labeled samples of 10–20 mg each. Here we show that a new NMR probe, pushing magic‐angle sample rotation to frequencies around 100 kHz, makes it possible to narrow the proton resonance lines sufficiently to provide the necessary sensitivity and spectral resolution for efficient and sensitive proton detection. Using restraints from such spectra, a well‐defined de novo structure of the model protein ubiquitin was obtained from two samples of roughly 500 μg protein each. This proof of principle opens new avenues for structural studies of proteins available in microgram, or tens of nanomoles, quantities that are, for example, typically achieved for eukaryotic membrane proteins by in‐cell or cell‐free expression.     

Spin‐Polarized Structures and Solid‐State NMR Spectroscopy of Paramagnetic Compounds

On an atomic scale and with high sensitivity, solid‐state NMR spectroscopy can provide information about the electronic spin density and coupling mechanisms in paramagnetic compounds. The picture shows how the hyperfine splitting collapses through relaxation. Insights into which compounds are suitable and which approximations have to be made are given.

     

An Investigation into PEO/Crosslinked‐Silicone Semi‐Interpenetrating Polymer Network Using 1H Solid‐State NMR Spectroscopy under Fast MAS

Microstructure and phase behavior of a semi‐interpenetrating polymer network consisting of 10% poly(ethylene oxide) and 90% crosslinked‐silicone have been studied using various ¹H solid‐state NMR methods under fast magic angle spinning in combination with well‐known polymer characterization techniques. Both, ¹H double‐quantum MAS NMR spectroscopy as well as NOESY MAS measurements indicate a mixing of the two components on a molecular level.     

Revisiting Prussian Blue Analogues with Solid‐State MAS NMR Spectroscopy: Spin Density and Local Structure in [Cd3{Fe(CN)6}2]⋅15 H2O

No legendary Prussian order! The distribution of vacancies in Prussian blue analogues is not random, and the spin density on the Cd²⁺ ion varies depending on the number of paramagnetic ions in its surroundings. This conclusion follows from ¹¹³Cd solid‐state magic‐angle spinning NMR studies of [Cd₃{Fe/Co(CN)₆}₂]?15 H₂O, where the presence of small but significant spin density on the observed ¹¹³Cd nucleus leads to improved spectral resolution.

     

Stacking Structure of Confined 1‐Butanol in SBA‐15 Investigated by Solid‐State NMR Spectroscopy

Understanding the complex thermodynamic behavior of confined amphiphilic molecules in biological or mesoporous hosts requires detailed knowledge of the stacking structures. Here, we present detailed solid‐state NMR spectroscopic investigations on 1‐butanol molecules confined in the hydrophilic mesoporous SBA‐15 host. A range of NMR spectroscopic measurements comprising of ¹H spin–lattice (T₁), spin–spin (T₂) relaxation, ¹³C cross‐polarization (CP), and ¹H,¹H two‐dimensional nuclear Overhauser enhancement spectroscopy (¹H,¹H 2D NOESY) with the magic angle spinning (MAS) technique as well as static wide‐line ²H NMR spectra have been used to investigate the dynamics and to observe the stacking structure of confined 1‐butanol in SBA‐15. The results suggest that not only the molecular reorientation but also the exchange motions of confined molecules of 1‐butanol are extremely restricted in the confined space of the SBA‐15 pores. The dynamics of the confined molecules of 1‐butanol imply that the ¹H,¹H 2D NOESY should be an appropriate technique to observe the stacking structure of confined amphiphilc molecules. This study is the first to observe that a significant part of confined 1‐butanol molecules are orientated as tilted bilayered structures on the surface of the host SBA‐15 pores in a time‐average state by solid‐state NMR spectroscopy with the ¹H,¹H 2D NOESY technique.     

Unique Identification of Supramolecular Structures in Amyloid Fibrils by Solid‐State NMR Spectroscopy

The fibril structure formed by the amyloidogenic fragment SNNFGAILSS of the human islet amyloid polypeptide (hIAPP) is determined with 0.52 Å resolution. Symmetry information contained in the easily obtainable resonance assignments from solid‐state NMR spectra (see picture), along with long‐range constraints, can be applied to uniquely identify the supramolecular organization of fibrils.

     

Probing Transient Conformational States of Proteins by Solid‐State R1ρ Relaxation‐Dispersion NMR Spectroscopy

The function of proteins depends on their ability to sample a variety of states differing in structure and free energy. Deciphering how the various thermally accessible conformations are connected, and understanding their structures and relative energies is crucial in rationalizing protein function. Many biomolecular reactions take place within microseconds to milliseconds, and this timescale is therefore of central functional importance. Here we show that R_1ρ relaxation dispersion experiments in magic‐angle‐spinning solid‐state NMR spectroscopy make it possible to investigate the thermodynamics and kinetics of such exchange process, and gain insight into structural features of short‐lived states.     

Probing the Local Structure of Pure Ionic Liquid Salts with Solid‐ and Liquid‐State NMR

Room‐temperature ionic liquids (RTILs) are gaining increasing interest and are considered part of the green chemistry paradigm due to their negligible vapour pressure and ease of recycling. Evidence of liquid‐state order, observed by IR and Raman spectroscopy, diffraction studies, and simulated by ab initio methods, has been reported in the literature. Here, quadrupolar nuclei are used as NMR probes to extract information about the solid and possible residual order in the liquid state of RTILs. To this end, the anisotropic nature and field dependence of quadrupolar and chemical shift interactions are exploited. Relaxation time measurements and a search for residual second‐order quadrupolar coupling were employed to investigate the molecular motions present in the liquid state and infer what kind of order is present. The results obtained indicate that on a timescale of ～10^?8 sec or longer, RTILs behave as isotropic liquids without residual order.     

An Efficient Labelling Approach to Harness Backbone and Side‐Chain Protons in 1H‐Detected Solid‐State NMR Spectroscopy

¹H‐detection can greatly improve spectral sensitivity in biological solid‐state NMR (ssNMR), thus allowing the study of larger and more complex proteins. However, the general requirement to perdeuterate proteins critically curtails the potential of ¹H‐detection by the loss of aliphatic side‐chain protons, which are important probes for protein structure and function. Introduced herein is a labelling scheme for ¹H‐detected ssNMR, and it gives high quality spectra for both side‐chain and backbone protons, and allows quantitative assignments and aids in probing interresidual contacts. Excellent ¹H resolution in membrane proteins is obtained, the topology and dynamics of an ion channel were studied. This labelling scheme will open new avenues for the study of challenging proteins by ssNMR.     

Untangling a Repetitive Amyloid Sequence: Correlating Biofilm‐Derived and Segmentally Labeled Curli Fimbriae by Solid‐State NMR Spectroscopy

Curli are functional bacterial amyloids produced by an intricate biogenesis machinery. Insights into their folding and regulation can advance our understanding of amyloidogenesis. However, gaining detailed structural information of amyloids, and their tendency for structural polymorphisms, remains challenging. Herein we compare high‐quality solid‐state NMR spectra from biofilm‐derived and recombinantly produced curli and provide evidence that they adopt a similar, well‐defined β‐solenoid arrangement. Curli subunits consist of five sequence repeats, resulting in severe spectral overlap. Using segmental isotope labeling, we obtained the unambiguous sequence‐specific resonance assignments and secondary structure of one repeat, and demonstrate that all repeats are most likely structurally equivalent.     

Thermal Behaviour and Glass Transition Dynamics of Inclusion Complexes of α‐Cyclodextrin with Poly(D,L‐lactic acid)

Inclusion complexes (ICs) have been prepared by the host–guest interaction between α‐cyclodextrin (αCD) and poly(d,l ‐lactic acid) (PDLLA). This enables transformation of the amorphous polymer into a well organized channel‐type crystalline structure, as studied by wide angle X‐ray scattering (WAXS). WAXS experiments using synchrotron radiation allowed the evolution of this crystalline structure to be followed upon heating. The diffraction peaks disappeared above 320 °C, in a temperature region similar to the occurrence of thermal degradation, also investigated by thermogravimetric analysis. No glass transition could be detected in the IC using differential scanning calorimetry (DSC), but non‐conventional dynamic mechanical analysis measurements revealed the existence of loss factor peaks shifted to higher temperatures when compared with PDLLA. The relaxation plot of the IC was characterized by an Arrhenius behaviour with a high activation energy that could be consistent with the high geometrical confinement felt by the chains in the nanostructured organization.

     

Morphology and dynamics of the poly(ϵ‐caprolactone)‐b‐poly(L‐lactide) diblock copolymer and its inclusion compound with α‐cyclodextrin: A solid‐state 13C NMR study

A biodegradable diblock copolymer of poly(ϵ‐caprolactone) (PCL) and poly(L ‐lactide) (PLLA) was synthesized and characterized. The inclusion compound (IC) of this copolymer with α‐cyclodextrin (α‐CD) was formed and characterized. Wide‐angle X‐ray diffraction showed that in the IC crystals α‐CDs were packed in the channel mode, which isolated and restricted the individual guest copolymer chains to highly extended conformation. Solid‐state ¹³C NMR techniques were used to investigate the morphology and dynamics of both the bulk and α‐CD‐IC isolated PCL‐b‐PLLA chains. The conformation of the PCL blocks isolated within the α‐CD cavities was similar to the crystalline conformation of PCL blocks in the bulk copolymer. Spin–lattice relaxation time (T₁C) measurements revealed a dramatic difference in the mobilities of the semicrystalline bulk copolymer chains and those isolated in the α‐CD‐IC channels. Carbon‐observed proton spin–lattice relaxation in the rotating frame measurements (T_1ρH) showed that the bulk copolymer was phase‐separated, while, in the IC, exchange of proton magnetization through spin‐diffusion between the isolated guest polymer chains and the host α‐CD was not complete. The two‐dimensional solid‐state heteronuclear correlation (HetCor) method was also employed to monitor proton communication in these samples. Intrablock exchange of proton magnetization was observed in both the bulk semicrystalline and IC copolymer samples at short mixing times; however, even at the longest mixing time, interblock proton communication was not observed in either sample. In spite of the physical closeness between the isolated included guest chains and the host α‐CD molecules, efficient proton spin diffusion was not observed between them in the IC. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 2086–2096, 2005