7‐Halogenated 7‐Deaza‐2′‐deoxyxanthine 2′‐Deoxyribonucleosides

The synthesis of the 7‐halogenated derivatives 1b (7‐bromo) and 1c (7‐iodo) of 7‐deaza‐2′‐deoxyxanthosine ( 1a ) is described. A partial Br→I exchange was observed when the demethylation of 6‐methoxy precursor compound 4b was performed with Me₃SiCl/NaI. This reaction is circumvented by the nucleophilic displacement of the MeO group under strong alkaline conditions. The halogenated 7‐deaza‐2′‐deoxyxanthosine derivatives 1b , c show a decreased S‐conformer population of the sugar moiety compared to the nonhalogenated 1a . They are expected to form stronger triplexes when they replace 1a in the 1 ?dA?dT base triplet.     

A Germanosilicate Structure with 11×11×12‐Ring Channels Solved by Electron Crystallography

Zeolites have been widely used in industry owing to their ordered micropores and stable frameworks. The pore sizes and shapes are the key parameters that affect the selectivity and efficiency in their applications in catalysis, sorption, and separation. Zeolites with pores defined by 10 and 12 TO₄ tetrahedra are often used for various catalytic processes. To optimize the performance of zeolites, it is extremely desirable to fine‐tune the pore sizes/shapes. The first germanosilicate zeolite with a three‐dimensional 11×11×12‐ring channel system, PKU‐16 (PKU, Peking University) is presented. Nanosized PKU‐16 was structurally characterized by the new three‐dimensional rotation electron diffraction (RED) technique. PKU‐16 is structurally related to the zeolite β polymorph C (BEC, 12×12×12‐ring channels) by rotating half of the four‐rings in double mtw units.     

7‐Iodo‐8‐aza‐7‐deaza‐2′‐deoxy­adenosine and 7‐bromo‐8‐aza‐7‐deaza‐2′‐deoxyadenosine

The isomorphous structures of the title molecules, 4‐amino‐1‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐3‐iodo‐1H‐pyrazolo‐[3,4‐d]pyrimidine, (I), C₁₀H₁₂IN₅O₃, and 4‐amino‐3‐bromo‐1‐(2‐deoxy‐β‐d ‐erythro‐pento­furan­osyl)‐1H‐pyrazolo[3,4‐d]­pyrimidine, (II), C₁₀H₁₂BrN₅O₃, have been determined. The sugar puckering of both compounds is C1′‐endo (^1′E). The N‐­glycosidic bond torsion angle χ¹ is in the high‐anti range [?73.2 (4)° for (I) and ?74.1 (4)° for (II)] and the crystal structure is stabilized by hydrogen bonds.     

Formation of Au nanocluster ordered array on Si(111)‐7 × 7 surface

We report a successful approach in fabricating well shape two‐dimensional Au nanocluster hexagonal array on an Si(111)‐7 × 7 surface. The size of Au hexagons is about 2.5 × 2.5 nm². The easiness of preparing large scale Au hexagonal array makes this approach usable to fabricate a wide range of other metal nanocluster arrays. Further deposition of small amount of Au nanoclusters on the Au hexagonal array surface will prefer to occupy the holes of the hexagonal array at room temperature. Finally, a reasonable structure of formatting the hexagonal Au nanocluster array on the Si(111)‐7 × 7 surface was proposed. Copyright © 2015 John Wiley & Sons, Ltd.     

7‐De­aza‐2′‐deoxy‐7‐propynyl­guanosine

The title compound, C₁₄H₁₆N₄O₄, adopts the anti conformation at the gly­cosylic bond [χ−117.1 (5)°]. The sugar pucker of the 2′‐deoxy­ribo­furan­osyl moiety is C2′‐endo–C3′‐exo, ²T₃ (S‐type). The orientation of the exocyclic C4′—C5′ bond is +sc (gauche). The propynyl group is linear and coplanar with the nucleobase moiety. The structure of the compound is stabilized by several hydrogen bonds (N—H⋯O and O—H⋯O), leading to the formation of a multi‐layered network. The nucleobases, as well as the propynyl groups, are stacked. This stacking might cause the extraordinary stability of DNA duplexes containing this compound.     

High‐TC Ferromagnetic Semiconductor‐Like Behavior and Unusual Electrical Properties in Compounds with a 2×2×2 Superstructure of the Half‐Heusler Phase

Heusler phases, including the full‐ and half‐Heusler families, represent an outstanding class of multifunctional materials on account of their great tunability in compositions, valence electron counts (VEC), and properties. Here we demonstrate a systematic design of a series of new compounds with a 2×2×2 superstructure of the half‐Heusler unit cell in X–Y–Z (X=Fe, Ru, Co, Rh, Ir; Y=Zn, Mn; Z=Sn, Sb) systems. Their structures were solved by using both powder and single‐crystal X‐ray diffraction, and also directly observed by using high‐angle annular dark‐field imaging in a scanning transmission electron microscope (HAADF‐STEM). The VEC values of these new compounds span a wide and continuous range comparable to those for the full‐ and half‐Heusler families, thereby implying tunability in compositions and physical properties in the superstructure. In fact, we observed abnormal electrical properties and a ferromagnetic semiconductor‐like behavior with a high and tunable Curie temperature in these superstructures.     

7‐Substituted 7‐Deaza‐2′‐deoxyadenosines and 8‐Aza‐7‐deaza‐2′‐deoxyadenosines: Fluorescence of DNA‐Base Analogues Induced by the 7‐Alkynyl Side Chain

7‐Alkynylated 7‐deazaadenine (pyrrolo[2,3‐d]pyrimidin‐4‐amine) 2′‐deoxyribonucleosides show strong fluorescence which is induced by the 7‐alkynyl side chain (Table 3). A large Stokes shift with an emission around 400 nm is observed when the compound is irradiated at 280 nm. The solvent dependence indicates the formation of a charged transition state. The fluorescence appears when the triple bond is in conjugation with the heterocyclic base. Electron‐donating substituents at the triple bond increase the fluorescence, while electron‐withdrawing residues reduce it. In comparison, the 7‐alkynylated 8‐aza‐7‐deazaadenine (pyrazolo[3,4‐d]pyrimidin‐4‐amine) 2′‐deoxyribonucleosides are rather weakly fluorescent (Table 4). Quantum yields and fluorescence decay times are measured. The synthesis of the 7‐alkynylated 7‐deaza‐2′‐deoxyadenosines and 8‐aza‐7‐deaza‐2′‐deoxyadenosines was performed with 7‐deaza‐2′‐deoxy‐7‐iodoadenosine ( 6 ) or 8‐aza‐7‐deaza‐2′‐deoxy‐7‐iodoadenosine ( 22 ) as starting materials and employing the Pd⁰‐catalyzed cross‐coupling reaction with the corresponding alkynes (Schemes 1, 4, and 5). Catalytic hydrogenation of the side chain of the unsaturated nucleosides 5 and 17 afforded the 7‐alkyl derivatives 18 and 19 , respectively, which do not show significant fluorescence (Scheme 2).     

2‐Amino‐7‐chloro‐2′‐deoxy­tubercidin

In 4‐chloro‐7‐(2‐de­oxy‐β‐d ‐erythro‐pento­furanos­yl)‐7H‐pyr­rolo­[2,3‐d]­pyrimidine‐2,4‐diamine, C₁₁H₁₄ClN₅O₃, the conformation of the N‐glycosylic bond is between anti and high‐anti [χ = −102.5 (6)°]. The 2′‐deoxy­ribofuranosyl unit adopts the C3′‐endo‐C4′‐exo (³T₄) sugar pucker (N‐type) with P = 19.6° and τ_m = 32.9° [terminology: Saenger (1989). Landolt‐Börnstein New Series, Vol. 1, Nucleic Acids, Subvol. a, edited by O. Madelung, pp. 1–21. Berlin: Springer‐Verlag]. The orientation of the exocyclic C4′—C5′ bond is +ap (trans) with a torsion angle γ = 171.5 (4)°. The compound forms a three‐dimensional network that is stabilized by four inter­molecular hydrogen bonds (N—H⋯O and O—H⋯N) and one intra­molecular hydrogen bond (N—H⋯Cl).     

Synthesis,Single Crystal Growth and Crystal Structure of Ta7Cu10Ga34 – a 8 × 4 × 2 Super Structure of CsCl

Single crystals of Ta₇Cu₁₀Ga₃₄ were grown from the elements in a Cu/Ga melt. Ta₇Cu₁₀Ga₃₄ represents the first ternary compound of the system Ta/Cu/Ga. The crystal structure (Cmmm, oC102, Z = 2, a = 23.803(1), b = 12.2087(4), c = 5.7487(2) Å, 1291 refl. 78 parameters, R₁ = 0.037, wR₂ = 0.070). The crystal structure is characterized by rods of pentagonal prisms MGa₁₀, which are alternatingly occupied by Ta and Cu. Four of these rods are connected to columns running in direction (001). These columns are linked by cubic units TaGa₈, CuGa₈, and GaGa₈. According to the characteristic structural elements and the size of the unit cell Ta₇Cu₁₀Ga₃₄ represents a 8 × 4 × 2 super structure of CsCl or bcc. With respect to the underlying CsCl structure the formula can be written as [Ta₇Cu₁₀Ga₂□₁₃]Ga₃₂, i.e. a cubic primitive packing of 32 Ga atoms with Ta, Cu, and Ga in cubic voids and 13 vacancies. The pentagonal‐prismatic coordination of Ta and Cu can formally be obtained from the cubic primitive packing of Ga atoms by a 45° rotation of a part of the Ga₈ cubes. There is a close similarity to the binary compounds Ta₈Ga₄₁ and Ta_2–xGa_5+x. The first one is also related to a CsCl‐like structure, the latter one contains rods of pentagonal prisms, which form the same columns. There are also relations to the ternaries V₂Cu₃Ga₈ and V₁₁Cu₉Ga₄₆, whose cubic structures are more or less complex variants of CsCl.     

7‐Cyclopropyl‐2′‐deoxytubercidin: a carbocyclic side‐chain derivative of 7‐deaza‐2′‐deoxyadenosine

The title compound {systematic name: 4‐amino‐5‐cyclopropyl‐7‐(2‐deoxy‐β‐D‐erythro‐pentofuranosyl)‐7H‐pyrrolo[2,3‐d]pyrimidine}, C₁₄H₁₈N₄O₃, exhibits an anti glycosylic bond conformation, with the torsion angle χ = −108.7 (2)°. The furanose group shows a twisted C1′‐exo sugar pucker (S‐type), with P = 120.0 (2)° and τ_m = 40.4 (1)°. The orientation of the exocyclic C4′—C5′ bond is ‐ap (trans), with the torsion angle γ = −167.1 (2)°. The cyclopropyl substituent points away from the nucleobase (anti orientation). Within the three‐dimensional extended crystal structure, the individual molecules are stacked and arranged into layers, which are highly ordered and stabilized by hydrogen bonding. The O atom of the exocyclic 5′‐hydroxy group of the sugar residue acts as an acceptor, forming a bifurcated hydrogen bond to the amino groups of two different neighbouring molecules. By this means, four neighbouring molecules form a rhomboidal arrangement of two bifurcated hydrogen bonds involving two amino groups and two O5′ atoms of the sugar residues.     

An Extra‐Large‐Pore Zeolite with 24×8×8‐Ring Channels Using a Structure‐Directing Agent Derived from Traditional Chinese Medicine

Extra‐large‐pore zeolites have attracted much interest because of their important applications for processing larger molecules. Although great progress has been made in academic science and industry, it is challenging to synthesize these materials. A new extra‐large‐pore zeolite SYSU‐3 (Sun Yat‐sen University no. 3) has been synthesized by using a novel sophoridine derivative as an organic structure‐directing agent (OSDA). The framework structure was solved and refined using continuous rotation electron diffraction (cRED) data from nanosized crystals. SYSU‐3 exhibits a new zeolite framework topology, which has the first 24×8×8‐ring extra‐large‐pore system and a framework density (FD) as low as 11.4 T/1000 ų. The unique skeleton of the OSDA plays an essential role in the formation of the distinctive zeolite structure. This work provides a new perspective for developing new zeolitic materials by using alkaloids as cost‐effective OSDAs.