The infrared spectrum of bis(fluorosulfonyl)imide revisited: Attractive performances of the PBE0/6-31G** model

We report a systematic investigation of the far- and mid-infrared spectra of ionic liquids (ILs) containing the bis(fluorosulfonyl)imide (FSI) anion, both in the liquid state at room temperature and in solid phases at low temperatures. We extended to lower frequencies a previous study, and we observed four additional vibration bands below 500 cm⁻¹, attributable to FSI. Moreover, DFT calculations of vibration frequencies were performed using three combinations of theory and basis set: (1) B3LYP/6-31G**, (2) B3LYP/6-311 + G(3df) and (3) PBE0/6-31G**. Model 1, largely used in the previous literature concerning ILs, shows the poorest performances; model 2, which generally gives a good agreement with the experiments, misses the vibration frequencies by ∼40 cm⁻¹ in the range 650–900 cm⁻¹ where one finds the largest spectral differences between cis- and trans-FSI; model 3 gives the best agreement with the experiments and, moreover, is much less time consuming than model 2. The comparison with calculations suggests that the band centered around 1217 cm⁻¹ is a good marker of the occurrence of the cis-FSI conformer. Finally, the bands located around 730 and 750 cm⁻¹ are attributable to cis- and trans- conformer of FSI, respectively.     

Infrared spectra of bis(trifluoromethanesulfonyl)imide based ionic liquids: Experiments and DFT simulations

We measured the far- and mid-infrared spectra of three ionic liquids having bis(trifluoromethanesulfonyl)imide anions and three different cations of the families of pyrrolidinium and ammmonium ions. The molecular vibrations of the individual ions were calculated by means of DFT theory at the B3LYP/6-31G** level: we found good agreement between the experimental and the computed frequencies. The infrared lines are ascribable to molecular vibrations of the single ions, suggesting an extremely weak interaction between anions and cations. The spectral lines found experimentally between 760 and 1050 cm⁻¹ are fingerprints for different cations. The comparison with the calculated frequencies allows the assignment of the experimental spectral lines to specific molecular vibrations of anions and for the first time of the specific cations of the measured ionic liquids.     

Molecular and electronic structures, infrared spectra, and vibrational assignment for ap and sc conformers of hexafluoro-iso-propanol

Comprehensive studies of the molecular structures, vibrational frequencies and infrared intensities of the antiperiplanar (ap) and synclinal (sc) conformers of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) have been performed by the density functional (B3LYP) method using the extended 6-311++G(df,pd) basis set. The detailed natural bond orbital (NBO) analysis has revealed the nature of the hyperconjugative interactions, which stabilize each conformer, in the gas phase. The mid-infrared spectra of HFIP in carbon tetrachloride solution were measured, and the experimental intensities of each conformer were obtained by the curve–resolution procedure. The relative abundance of the two conformers, calculated from the relative intensities, shows nearly equimolar ratio (N_sc/N_ap ≈ 1), in this solution. The DFT-predicted frequencies show very good agreement with the experimental data. The clear-cut vibrational assignment for each conformer is reported on the basis of the calculated potential energy distributions. Several controversies in an earlier assignment of HFIP have been elucidated.     

DFT calculations on the structural stability and infrared spectroscopy of endohedral metallofullerenes

Endohedral metallofullerenes M@C₂₄ (M = Li^0/+, Na^0/+, K^0/+, Be^0/2+, Mg^0/2+ and Ca^0/2+) with different spin configurations have been systematically investigated using the hybrid DFT-B3PW91 functional in conjunction with 6-31G(d) basis sets. Our theoretical studies show that Li@C₂₄, Be@C₂₄, Be²⁺@C₂₄, and Mg²⁺@C₂₄ are energetically favorable. In these endohedral metallofullerenes, only the encapsulated Be and Ca atoms can donate the electrons to the cage. With exception of Be²⁺@C₂₄, the energy gaps of other charged compounds are larger than that of corresponding neutral compounds. We also find that some endohedral metallofullerenes have high energy gaps, but they are unlikely to show high thermodynamic stability. Additionally, the vibrational frequencies and active infrared intensities are also used as evidence to identify these endohedral metallofullerenes.     

A conformational study of hydroxylated isoflavones by vibrational spectroscopy coupled with DFT calculations

The conformational preferences of a series of hydroxylated isoflavones were studied by optical vibrational spectroscopy (FTIR and Raman) coupled with density functional theory (DFT) calculations. Special attention was paid to the effect of the hydroxyl substitution, due to the importance of this group in the biological activity of these systems. The isoflavones investigated – daidzein, genistein and formononetin – were shown to exist in distinct conformations in the solid state, namely regarding the orientation of the hydroxylic groups at C⁷ and within the catechol moiety, that are determinant factors for their conformational behaviour and antioxidant ability. In the light of the most stable conformers obtained for each molecule, a complete assignment of their experimental vibrational spectra was performed.     

Structure of the complex of dimethylphenyl betaine with dichloroacetic acid studied by X-ray diffraction,DFT calculations,infrared and Raman spectra

The structure of the complex of dimethylphenyl betaine (DMPB) with dichloroacetic acid (DCA) (1) has been investigated by X-ray diffraction, FTIR and Raman spectroscopy, and B3LYP/6-311 + + G(d,p) calculations. The crystal is monoclinic, space group P2₁. The acid is connected with betaine through the OH⋯O hydrogen bond of 2.480(2) Å. In the optimized structure the short, asymmetric O⋯O distance is 2.491 Å. FTIR spectrum shows a broad absorption in the 1500–400 cm⁻¹ region characteristic of very short OH⋯O hydrogen bond caused by Fermi resonance between νOH and overtones of δOH and γOH. In the Raman spectrum this broad absorption is not observed. The potential energy distributions (PED) were used for the assignments of IR and Raman frequencies in the experimental and calculated spectra. The FTIR and Raman spectra of the crystal complex are consistent with the X-ray results.     

A DFT study of the hydrolysis of hydantoin

Density functional theory (DFT) calculations were made on the hydrolysis of hydantoin (2,4-imidazolidinedione). In the neutral hydrolysis, reacting systems composed of hydantoin and (H₂O)_n with n = 1+3, 2+3, 3+3, and 4+3 were adopted. Three water molecules (“+3”) participate in the in-plane hydrogen-bond circuit, and the n–3 = 1, 2, 3 or 4 water cluster works for the out-of-plane nucleophilic attack onto the carbonyl carbon of hydantoin. Transition states (TSs) involving bond interchanges prompted by proton transfers were determined. The reaction path with n = 3+3 containing N-carbamoyl glycine, N-carboxy glycine and three tetrahedral intermediates was found to be most likely. In the acid-catalyzed hydrolysis, a reacting system composed of hydantoin and H₃O⁺(H₂O)₇ was employed. Ten TSs and nine intermediates were obtained. N-carbamoyl glycine and N-carboxy glycine were confirmed to be detectable stable species. The product consists of glycine, carbonic acid (not CO₂), NH₄⁺, and (H₂O)₅. It has the exothermic energy, whereas the product in the neutral hydrolysis is of the endothermic one for all n values. For both neutral (n = 3+3) and acid-catalyzed hydrolyses, the rate-determining steps were calculated to be for formation of the tetrahedral intermediate, HOOC-CH₂-NH-C(OH)₂NH₂. The pattern of proton transfers along hydrogen bonds was carefully investigated.     

Strong intramolecular hydrogen bonds. Part I. Vibrational frequencies of the OH group in some picolinic acid N-oxides predicted from DFT calculated potentials and located in the infrared spectra

Hydrogen bonding in picolinic acid N-oxide (I), its 4-nitro (III), 4-methoxy (IV), 4-amino (V) derivatives and in quinaldic acid N-oxide (II) was characterized by calculations (B3LYP/6-31G(d)) of metric parameters, H-bond energies and one-dimensional proton potential functions with vibrational energy levels. Solvent effects were estimated by the SCRF PCM method of Tomasi and coworkers (J. Tomasi, M. Persico, Chem. Rev. 94 (1994) 2027). The potential functions are strongly asymmetric with the energy minimum placed near the carboxylic oxygen. The inflection near the NO oxygen develops into a second, shallower minimum under the SCRF.

Empirical assignments of the OH stretching and bending modes were made for (I)–(IV). The stretchings of (I, II) and (IV) in various solvents are observed in the region 1600–1300 cm⁻¹, but near 2600 cm⁻¹ for (III). The calculated and observed frequencies are in fairly good agreement with theoretical predictions reflecting the electronic effects of the substituents upon the H-bond strength. The observed trends in the solvent effects upon various parameters characterizing the H-bonding also correspond to predictions.     

Molecular conformations of a partially halogenated ether: A study based on infrared spectroscopy and density functional theory calculations

A new partially halogenated ether (ClCF₂CF(CF₃)OCF₂CH₃) has been synthesized and characterized using DSC, GC, ¹H and ¹⁹F NMR, IR. The experimental infrared spectra of this “flexible” molecule have been successfully interpreted on the basis of reliable Density Functional Theory calculations. An efficient method useful for the identification of the many stable conformers has been developed and applied. Infrared spectra of the stable conformers have been simulated after full geometry optimization. The results obtained allow detection of conformation-sensitive bands, making possible the interpretation of fine details in the spectra.     

In silico study of remdesivir with and without ionic liquids having different cations using DFT calculations and molecular docking

The new coronavirus is trying best to kill the humanity with its highly infectious nature and its first infection was reported in 2019; later this infection was named as COVID-19. Health-care systems are still the using repurposing drugs to cure the patients from this infection. Remdesivir is found to have good potential to cure the patients from this infection and is being extensively used during the 1^st and 2^nd wave of COVID-19. Therefore, in the present work, authors have studied the interaction of remdesivir with different ionic liquids with change in cations using density functional theory calculation in gaseous and water. Based on the DFT calculations, it was found that remdesivir interacts effectively with different ionic liquids based on the energy; further, the change in free energy for Remdesivir-[Bet-ester][Lev] (1) was found to be ?3223.5758 and ?3223.6533 hartree per particle in gaseous and water respectively and most stable; further, 2 and 3 have the comparable free energies. Further, the potential of remdesivir with and without ionic liquids against the main protease of SARS-CoV-2 was investigated using molecular docking. Results revealed that Remdesivir-[Chol][Lev] (2) and Remdesivir-[Chol-ether][Lev] (3) have shown promising results with binding energy of ?129.64 ?kcal/mol and ?125.44 ?kcal/mol respectively while Remdesivir [Bet-ester][Lev] (1) have a binding energy of -123.86 kcal/mol. It is important to mention that changing the cations in ionic liquid play an important role in the docking. It is also observed that the ionic liquid having sodium as cation, then the binding energy against Mpro of CoV is poor and even less than the remdesivir alone.     

Complexes of dihydroxybenzenes with carbon monoxide by DFT calculations and FT-IR matrix spectroscopy

Weakly bound complexes of dihydroxybenzenes and nitrophenols with carbon monoxide were the objects of theoretical studies based on the Becke–Lee–Parr density functional. Stability and vibrational spectra of all stable bimolecular complexes were determined and the theoretical results were integrated by matrix isolation FT-IR spectroscopy measurements.     

The infrared and Raman spectra, ab initio calculations and spectral assignments of cyclopropylmethyl dichlorosilane (c-C3H5)SiCl2CH3

Raman spectra of cyclopropylmethyl dichlorosilane (c-C₃H₅)SiCl₂CH₃ as a liquid were recorded at 293 K and polarization data were obtained. Additional Raman spectra were recorded at various temperatures between 293 and 163 K, and intensity changes of certain bands with temperature were detected. No crystallization was ever obtained in the Raman cryostat in spite of extensive annealing. The infrared spectra have been studied as a vapour, as an amorphous solid at 78 K and as a liquid in the range 600-100 cm⁻¹. No infrared bands present in the vapour or liquid seemed to vanish upon cooling, and the sample never formed crystals on the CsI window of an infrared cryostat.The compound exists a priori in two conformers, syn and gauche, and the experimental results suggest an equilibrium in which the gauche conformer has 1.64 kJ mol⁻¹ lower enthalpy than syn in the liquid, leading to 20% syn at ambient temperature. Most of the syn bands were situated close to the corresponding gauche bands and it was difficult to obtain reliable ΔH values.B3LYP calculations with various basis sets and the CBS-QB3 and G2 and G3 models were employed, yielding the conformational enthalpy difference ΔH (syn-gauche) between 2.6 and 3.4 kJ mol⁻¹. Infrared and Raman intensities, polarization ratios and vibrational frequencies for the syn and gauche conformers were calculated. Instead of scaling the calculated wavenumbers in the harmonic approximation, calculations from B3LYP/cc-pVTZ were derived in the anharmonic approximation. In most cases these values were in good agreement with the experimental results for 38 observed modes of the gauche and 8 modes of the syn conformer with a deviation of ca. 1%.     

Intramolecular mobility and phase transitions in ammonium oxofluoroniobates (NH4)2NbOF5 and (NH4)3NbOF6, a NMR and DFT study

Molecular structure, ionic mobility and phase transitions in six- and seven-coordinated ammonium oxofluoroniobates (NH₄)₂NbOF₅ and (NH₄)₃NbOF₆ were studied by ¹⁹F, ¹H NMR and DFT calculations. Equatorial fluorine atoms (F_eq) in [NbOF₅]²⁻ and [NbOF₆]³⁻ are characterized by high ¹⁹F NMR chemical shifts while axial fluorine atoms (F_ax) have those essentially lower. The high-temperature ionic mobility in (NH₄)₂NbOF₅ does not stimulate the ligand exchange F_eq ↔ F_ax, whereas it is observed in (NH₄)₃NbOF₆ as pseudorotation typical for seven-coordinated polyhedra. The transformation of pentagonal bipyramidal structure (BP) of [NbOF₆]³⁻ into capped trigonal prismatic (CTP) one takes place during the phase transition (PT) at 260 K. The PT of order-disorder type in (NH₄)₂NbOF₅ is accompanied by transition of anionic sublattice to a rigid state. The ¹⁹F and ¹H NMR data corroborate the independent motions of NH₄ groups and anionic polyhedra in (NH₄)₂NbOF₅ while they are coordinated in (NH₄)₃NbOF₆.     

Ab initio and DFT calculations for the structure and vibrational spectra of cyclopentene and its isotopomers

Ab initio calculations using the MP2/cc-pVTZ basis set do an excellent job of predicting the inversion barrier (247 vs. 232 cm⁻¹) and dihedral angle (26°) of cyclopentene. DFT calculations also do an excellent job of predicting the vibrational frequencies of the d₀, d₁, d₄, and d₈ isotopomers. They have also allowed the reassignments of several of the vibrational frequencies.     

Conformational studies of bipyrimidine-based mesogens by combination of DFT calculations and temperature-dependent infrared studies

Combination of DFT calculations and solid-state temperature-dependent infrared spectroscopy has confirmed that the central core of recently developed bipyrimidine-based mesogens is not flat, i.e. do not adopt a disc shape, inside the columnar liquid-crystalline phase. For this purpose, the intensities and the frequency shifts of the most sensitive C–N and C–C bands of the central bipyrimidine core have been studied as a function of the temperature and of the dihedral angle. The results support the reported packing model in which the molecules are interdigitated alternatively along their long axis and their short axis to form columns inside the mesophase.     

Vibrational study of caffeic acid phenethyl ester,a potential anticancer agent,by infrared,Raman, and NMR spectroscopy

The structural and vibrational properties of caffeic acid phenethyl ester (CAPE) were studied using infrared and Raman spectroscopy in the solid phase and multidimensional nuclear magnetic resonance (NMR) spectroscopy in solution. The theoretical structures of the compound and of its dimer in the gas phase and in DMSO solution by using density functional theory (DFT) were studied. The harmonic vibrational frequencies for the optimized geometry of CAPE and its dimeric species were calculated at the B3LYP level of theory using the 6–31G* basis set. These data allow a complete assignment of the vibration modes of the FTIR and Raman spectra in the solid state using the scaled quantum mechanical force field (SQMFF) methodology. The vibrational analysis for the dimer was performed taking into account the correlation diagram by means of the factor group analysis in accordance with the experimental structure determined by X-ray diffraction. The presence of the dimer of CAPE is supported by the IR bands at 1654, 1635, 1563, 1533, 1300, 1107, 1050, 738 cm⁻¹ and the Raman bands at 1684, 1681, 1634, 1112, 1050, 928, 873, 850, 740, 445, 371 and 141 cm⁻¹. The calculated ¹H and ¹³C chemicals shifts are consistent with the corresponding experimental NMR spectra of the compound in solution. In addition, a natural bond orbital (NBO) study revealed the characteristics of the electronic delocalization of the stable structure, while the corresponding topological properties of the electronic charge density were analyzed by employing Bader's atoms in the molecules theory (AIM).     

A novel tricarbonyl rhenium complex of 2-benzoylpyridine - Synthesis, spectroscopic characterization, X-ray structure and DFT calculations

The reaction of Re(CO)₅Cl with 2-benzoylpyridine (bopy) has been examined and a novel Re(CO)₃⁺ tricarbonyl - fac-[Re(CO)₃(bopy)Cl] - has been obtained. The compound has been studied by IR, UV-Vis spectroscopy and X-ray crystallography. The molecular orbital diagram of the tricarbonyl has been calculated with the density functional theory (DFT) method. The spin-allowed singlet-singlet electronic transitions of [Re(CO)₃(bopy)Cl] have been calculated with the time-dependent DFT method, and the UV-Vis spectrum of the title compound has been discussed on this basis.     

Scaled quantum chemical calculations and FTIR, FT-Raman spectral analysis of 3,4-diamino benzophenone

The vibrational spectra of 3,4-diamino benzophenone (DABP) have been computed using B3LYP methodology and 6-31G* and 6-31G** basis sets. The solid phase FTIR and FT-Raman spectra were recorded in the region 4000-400 cm-1 and 3500-100 cm-1, respectively. A close agreement was achieved between the observed and calculated frequencies by employing normal coordinate calculations. The observed and simulated spectra were found to be well comparable.     

Molecular structure and vibrational raman and infrared spectra of bromochlorofluoromethane and its silicon and germanium analogs: quantum-mechanical DFT and MP2 calculations

DFT(B3LYP) and MP2 calculations with the 6-311G(2d, 2p)-type basis set have been carried out for the prediction of molecular parameters (bond distances, bond angles, rotational constants, and dipole moments) and vibrational Raman and infrared spectra (harmonic wavenumbers, absolute intensities, Raman scattering activities, and depolarization ratios) of bromochlorofluoromethane (HCBrCIF) and its silicon and germanium analogs (HSiBrClF and HGeBrCIF). The predicted geometry and vibrational Raman and infrared spectra of HCBrClF agree well with the available experimental data for this molecule and their deuterated derivatives. This agreement allows one to believe that the predicted molecular parameters and vibrational spectra of HSiBrClF, HGeBrClF, and their deuterated derivatives will guide their future experimental studies.