STM and chemistry: a qualitative molecular orbital understanding of the image of CO on a Pt surface

Theoretical calculations of STM images for isolated carbon monoxide on Pt(111) have been performed. These simulations are directly comparable to experimental data from Eigler's group. They also confirm a strong site dependence of the STM molecular contrast and assign the two experimental STM forms of CO with two distinct binding sites (the top and the bridge sites) which have already been well-characterised by other surface techniques. Moreover, the approach used here allows a detailed understanding of the electronic origin of the STM molecular pattern. Hence, we demonstrate that the CO STM pattern results from the superposition, with interference effects, of two current contributions. The direct through space tunneling process between the tip and the metal surface is decreased by the presence of the adsorbate molecule, but this depression in the current is more or less compensated, depending on the binding site, by the tunnel current mediated by the molecular levels of the adsorbate. The frontier π orbitals of CO have a small contribution to the current and the σ framework has the major influence with the 5σ lone pair (HOMO of CO) and also the low-lying 3σ. These two MO contributions, however, show a destructive interference effect, and this, together with the absence of π current, is responsible for the weak amplitude of the CO STM image.     

Study of the origin of superstructure patterns in the scanning tunneling images of perylene-3,4,9,10-tetracarboxylic-dianhydride on graphite by electronic structure calculations

Partial electron density plots were calculated for various arrangements of perylene-3,4,9,10-tetracarboxylic-dianhydride (PTCDA) molecules on graphite to understand why scanning tunneling microscopy (STM) images of PTCDA on graphite exhibit superstructure contrast variations. In agreement with experiment, the contrast of the partial electron density plot depends strongly on the orientation and position of PTCDA on graphite. This observation originates from the fact that the overlap between the orbitals of the adsorbate and substrate is strongly affected by their relative arrangement. The HOMO or LUMO density of an adsorbate molecule can be inadequate in interpreting STM images of adsorbate molecules.     

Real-time imaging of K atoms on graphite: interactions and diffusion

Scanning tunneling microscopy (STM) at liquid helium temperature is used to image potassium adsorbed on graphite at low coverage (≈0.02 monolayer). Single atoms appear as protrusions on STM topographs. A statistical analysis of the position of the atoms demonstrates repulsion between adsorbates, which is quantified by comparison with molecular dynamics simulations. This gives access to the dipole moment of a single adsorbate, found to be 10.5±1 D. Time-lapse imaging shows that long-range order is broken by thermally activated diffusion, with a 30 meV barrier to hopping between graphite lattice sites.     

氢原子吸附对金表面金属酞菁分子的吸附位置、自旋和手征性的调控

实现单个功能有机分子构型、电子结构和自旋态的可逆调控, 是未来分子电子学和分子自旋电子学应用的关键. 近年来, 我们利用极低温强磁场超高真空扫描隧道显微镜系统, 结合第一性原理计算, 系统研究了氢原子吸附对金表面吸附的金属酞菁分子的自旋、手性和吸附位置的调控. 通过将金表面吸附的酞菁锰分子暴露于氢气或氢原子环境, 使得分子中心的磁性离子吸附单个氢原子, 从而实现了体系近藤效应由“开”到“关”的转变. 基于密度泛函理论的第一性原理计算表明, 氢原子吸附使得锰离子3d轨道内的电荷重排导致了分子的自旋由3/2降为1; 同时分子与金基底的间距增大, 使得近藤效应消失. 通过施加局域电压脉冲或者给样品加热, 可以实现单个或所有分子脱氢, 从而恢复体系的自旋态和近藤效应. 氢原子吸附还导致分子的优先吸附位置从金表面的面心立方堆垛区域变成了六角密排堆垛区域. 三个氢原子吸附于同一酞菁锰分子上, 可导致分子对称性的降低及分子镜面对称轴与金基底镜面对称轴的偏离, 从而导致手征性的出现. 这种分子吸附结构的手征性, 导致分子轨道也呈现出手征性. 这项工作为金属酞菁未来在分子电子学、自旋电子学、气体传感器等方面的应用提供了新思路.     

Model calculations of STM imaging and manipulation of oxygen on Pt(111)

We study tip-adsorbate–substrate interactions in scanning tunneling microscopy (STM) manipulation and imaging, and the influence of impurities on the images. Thence, we perform molecular dynamics simulations and calculate qualitative STM images for oxygen on Pt(1 1 1) surface. The adsorption site of the oxygen molecule is found to be in accordance with ab initio calculations. The calculated STM image has a good resemblance to the experimental ones. The contamination of the tip by oxygen or water alters the STM image strongly. Molecular dynamics simulations on manipulations of oxygen on the surface reveal several mechanisms of how molecular oxygen can be either produced or decomposed with STM tip. Finally, we find out that transfer of oxygen from the surface to an STM tip is not very probable.     

Single molecule vibrationally mediated chemistry

Tunnelling electrons may scatter inelastically with an adsorbate, releasing part of their energy through the excitation of molecular vibrations. The resolution of inelastic processes with a low temperature scanning tunnelling microscope (STM) provides a valuable tool to chemically characterize single adsorbates and their adsorption mechanisms. Here, we present a molecular scale picture of single molecule vibrational chemistry, as resolved by STM. To understand the way a reaction proceed it is needed knowledge about both the excitation and damping of a molecular vibration. The excitation is mediated by the specific coupling between electronic molecular resonances present at the Fermi level and vibrational states of the adsorbate. Thus, the two-dimensional mapping of the inelastic signal with an STM provides the spatial distribution of the adsorbate electronic states (near the Fermi level) which are predominantly coupled to the particular vibrational mode observed. The damping of the vibration follows a competition between different mechanisms, mediated via the creation of electron-hole pairs or via anharmonic coupling between vibrational states. This latter case give rise to effective energy transfer mechanisms which eventually may focus vibrational energy in a specific reaction coordinate. In this single-molecule work-bench, STM provides alternative tools to understand reactivity in the limit of low excitation rate, which demonstrate the existence of state-specific excitation strategies which may lead to selectivity in the product of a reaction.     

Bias-induced reconstruction of hybrid interface states in magnetic molecular junctions

Based on first-principles calculations, the bias-induced evolutions of hybrid interface states in π-conjugated tricene and in insulating octane magnetic molecular junctions are investigated. Obvious bias-induced splitting and energy shift of the spin-resolved hybrid interface states are observed in the two junctions. The recombination of the shifted hybrid interface states from different interfaces makes the spin polarization around the Fermi energy strongly bias-dependent. The transport calculations demonstrate that in the π -conjugated tricene junction, the bias-dependent hybrid interface states work efficiently for large current, current spin polarization, and distinct tunneling magnetoresistance. But in the insulating octane junction, the spin-dependent transport via the hybrid interface states is inhibited, which is only slightly disturbed by the bias. This work reveals the phenomenon of bias-induced reconstruction of hybrid interface states in molecular spinterface devices, and the underlying role of conjugated molecular orbitals in the transport ability of hybrid interface states.     

Bonding of saturated hydrocarbons to metal surfaces

The adsorption of octane on Cu(110) was studied by x-ray absorption and x-ray emission spectroscopy, in combination with spectrum calculations in the framework of density functional theory, as a model system for alkane adsorption on transition metals. Significant electron sharing between the adsorbate and metal surface and involvement of both bonding and antibonding C-H molecular orbitals in the molecule-metal bond was found. The calculations were extended to the case of octane adsorbed on Ni(110), and the position of the metal d band was found to be important for the bonding. The results were generalized to show that this is important for the efficiency as an alkane dehydrogenation catalyst.     

Interplay between metal-free phthalocyanine molecules and Au(110) substrates

Metal-free phthalocyanine (Pc) molecules adsorbed on the Au(110) surface have been studied both experimentally (STM, LEED) and with density functional calculations. A strong interaction between substrate and adsorbate is observed. On the one hand, a clear template effect of the anisotropic substrate is observed: already at low coverages, the Pc molecules adsorb in various typical row patterns. On the other hand, the molecular adsorption modifies the substrate: at coverages higher than 0.25 monolayers, the usual (1 × 2) reconstruction is converted to a (1 × 3) reconstruction. First principle DFT calculations yield adsorption geometries that agree with the measured STM images and adsorption energies in the range of 2–3 eV. The adsorption leads to covalent and van der Waals interactions between adsorbate and substrate and is accompanied by a considerable charge transfer.     

Electronic properties of hydrogen- and oxygen-terminateddiamond surfaces exposed to the air

The electronic properties of hydrogen- and oxygen-terminated diamond surfaces exposed to the air are investigated by scanning probe microscopy (SPM). The results indicate that for the hydrogen-terminated diamond surface a shallow acceptor above the valence-band-maximum (VBM) appears in the band gap. However, the oxygen-terminated diamond film exhibits a high resistivity with a wide band gap. Based on the density-functional-theory, the densities of states, corresponding to molecular adsorbate in hydrogenated and oxygenated diamond (100) surfaces, are studied. The results show that the shallow acceptor in the band gap for the hydrogen-terminated diamond film can be attributed to the interaction between the surface C--H bonding orbitals and the adsorbate molecules, while for the oxygen-terminated diamond film, the interaction between the surface C--O bonding orbitals and the adsorbate molecules can induce occupied states in the valence-band.     

Ion scattering spectroscopy and scanning tunneling microscopy: A powerful combination for surface structure analysis

Low-energy ion backscattering and scanning tunneling microscopy (STM) have been used in combination to get better insight into the field of surface crystallography. The synergic effectiveness resulting from the complementing character of the two methods has been exemplified at clean NiAl(111) and for oxygen and nitrogen adsorption on Cu(110). The position of the atom cores is accessible by the low-energy noble gas impact collision ion scattering spectroscopy with neutral detection (NICISS). As a technique averaging over a macroscopic area of the sample, NICISS is better suited to supply information on features of completely developed phases, either on clean or adsorbate saturated surfaces. Additional information, on the other hand, can be gained by scanning tunneling microscopy (STM), which as a powerful local probe may be used to image surfaces with atomic resolution and to monitor defects, steps and the growth kinetics of e.g. adsorption-induced phase changes.     

Prism design for image orientation changes by the screw triangle method

We apply the screw triangle method (STM), which was conventionally used in the field of mechanism design, to design a prism to produce a specified image orientation change (IOC). Compared to existing methods [Tsai and Lin, Appl. Opt.45, 3951 (2006); Appl. Opt.46, 3087 (2007)], the proposed method is both simpler and more efficient, since its derivations are essentially vector-based calculations. The validity of the proposed approach is demonstrated via an illustrative example.     

Novel orientational ordering and reentrant metallicity in K(x)C(60) monolayers for 3 < or = x < or = 5

STM studies on K(x)C(60) monolayers reveal new behavior over a wide range of the phase diagram. As x increases from 3 to 5 K(x)C(60) monolayers undergo metal-insulator-metal reentrant phase transitions and exhibit a variety of novel orientational orderings, including a complex 7-molecule, pinwheel-like structure. The proposed driving mechanism for the orientational ordering is the lowering of electron kinetic energy by maximizing the overlap of neighboring molecular orbitals. In insulating (metallic) K(x)C(60) this gives rise to orbital versions of the superexchange (double-exchange) interaction.     

Electron-induced attachment of chlorinated benzenes to Si(1 0 0)2 × 1

Thermal (300 K) and electron-induced reactions of benzene (Bz), chlorobenzene (ClPh), 1,2-dichlorobenzene (1,2-diClPh) and 1,4-dichlorobenzene (1,4-diClPh) with Si(1 0 0)2 × 1 have been examined by scanning tunneling microscopy (STM). Thermal reactions of Bz yielded predominantly the quadruply-σ-bound tight bridge, TB, configuration on top of the Si dimer-rows, For ClPh and 1,2-diClPh, which resembled one another, thermal reaction led with 45-50% yield to the doubly-σ-bound butterfly, BF, configuration, also on top of the dimer-row, and with 20% yield to a novel ‘displaced’, D, configuration to one side of a dimer-row. The adsorbate 1,4-diClPh was alone in favouring a configuration in which neighbouring dimer-rows were ‘linked’ (L) by a bright-feature centrally located between the dimer-rows. By ab initio calculation, we interpret D as due to the rupture of one C-Cl bond per adsorbate molecule, and L to the rupture of two C-Cl’s. The breaking of this weak bond is followed in the former case by attachment of the aromatic ring to one dimer-row, and in the latter to attachment to two adjacent dimer-rows. Application of a −5 V voltage pulse to the STM tip substantially increased the percentage of row-linking structures, L, for 1,4-diClPh, but neither −5 V nor +4-6 V volt pulses resulted in L-type binding of Bz. The postulated L product of 1,4-diClPh, with an aromatic ring linking the two inner Si atoms of adjacent dimer-rows and the two Cl’s on the outer Si atoms of the dimer-rows, is shown to be in accord with ab initio simulation of the observed STM image.     

STM images of a large organic molecule adsorbed on a bare metal substrate or on a thin insulating layer: Visualization of HOMO and LUMO

An isomer of the methylterrylene molecule was adsorbed both on Cu(111) and on a NaCl bilayer deposited on Cu(111) and imaged by ultra high vacuum scanning tunneling microscopy at low temperature (5 K). On the bare metal surface, the STM images do not reveal any intramolecular resolution and do not depend on the applied tunnel bias. On the contrary, the images acquired at specific bias voltages for the molecule on the salt layer show a striking similarity with the spatial distribution of the electronic probability density in the highest occupied molecular orbital (HOMO) and in the lowest unoccupied molecular orbital (LUMO) of free methylterrylene. They are well reproduced by elastic scattering quantum chemistry calculations. These data provide a direct view of the hyperconjugative interaction between the methyl group and the frontier orbitals of terrylene.     

Towards hybrid silicon-organic molecular electronics: The stability of acetone on the Si(0 0 1) surface

We present the results of a combined study using scanning tunneling microscopy (STM) and density functional theory (DFT) of the interaction of acetone [(CH₃)₂CO] with the Si(0 0 1) surface. Three distinct adsorbate features were observed using atomic-resolution STM. One of the features appears as a bright protrusion located above a Si-Si dimer, while the other two are asymmetric about the dimer row and involve a second neighboring Si-Si dimer. One of the two asymmetric features has a protrusion located between the two dimers, while the other has a protrusion which is located at the site of a single dimer and exhibits a dimer sized depression on the adjacent dimer. DFT calculations have been performed for two structures; the four-membered ring structure and dissociation structure. Our calculations show that the bright single-dimer sized feature observed in the STM images could be attributed to either of these two calculated structures. However, neither of the two calculated structures can explain the appearance of the two-dimer wide asymmetric features observed in the experiment.     

利用STM和CV方法测定有机发光材料的能带参数

利用扫描隧道显微镜/扫描隧道谱(STM/STS)的技术,研究了有机发光材料Alq₃、DPN-2CN和DNP-2CN的表面电子结构。将材料DPN-2CN和DNP-2CN的表面电子结构与Alq₃的表面电子结构进行对比,判定了DPN-2CN和DNP-2CN的最低空轨道(LUMO)能级。通过电化学循环伏安(CV)法,对DPN-2CN和DNP-2CN的LUMO能级和最高占有轨道(HOMO)能级进行了表征。两种测试方法所得到的LUMO能级参数基本一致。     

Reversible photomechanical switching of individual engineered molecules at a metallic surface

We have observed reversible light-induced mechanical switching for individual organic molecules bound to a metal surface. Scanning tunneling microscopy (STM) was used to image the features of individual azobenzene molecules on Au(111) before and after reversibly cycling their mechanical structure between trans and cis states using light. Azobenzene molecules were engineered to increase their surface photomechanical activity by attaching varying numbers of tert-butyl (TB) ligands ("legs") to the azobenzene phenyl rings. STM images show that increasing the number of TB legs "lifts" the azobenzene molecules from the substrate, thereby increasing molecular photomechanical activity by decreasing molecule-surface coupling.     

Molecules on insulating films: scanning-tunneling microscopy imaging of individual molecular orbitals

Ultrathin insulating NaCl films have been employed to decouple individual pentacene molecules electronically from the metallic substrate. This allows the inherent electronic structure of the free molecule to be preserved and studied by means of low-temperature scanning-tunneling microscopy. Thereby direct images of the unperturbed molecular orbitals of the individual pentacene molecules are obtained. Elastic scattering quantum chemistry calculations substantiate the experimental findings.