Studies on the Diels-Alder reaction of annulated furans: application to the synthesis of substituted phenanthrenes

In an attempt to utilize the synthetic power of the furan nucleus in the synthesis of complex natural products, we have developed an entry into annulated furan intermediates that involves an electrochemical annulation protocol. An approach to the eunicellin diterpenes based on this methodology required the use of an intermolecular Diels-Alder reaction on an annulated furan. Although well known for simple furans, there is a paucity of related examples on annulated furans. To examine the feasibility of such an approach to these diterpenes, we have studied this key cycloaddition reaction. Our studies indicate that the process can be hampered by a facile retro-Diels-Alder that is highly dependent on the dienophile employed.     

Electron charge redistribution following electrophilic attack on heterocycles: nitrogen as a charge transducer

It is shown that an electrophilic attack on the ring nitrogen in pyrrole or tryptamine produces an electron charge redistribution that is qualitatively different from the redistribution caused by an attack on the oxygen in furan. The electrophilic attacks are represented theoretically as interactions with a positive point charge and calculated by an ab-initio LCAO-SCF method with gaussian basis sets. Results show that an attacked nitrogen responds to the perturbation by moving electronic charge to the adjacent carbons whereas oxygen retains most of the charge polarized by the interaction. The nitrogen also acts as a charge transducer in other systems that are structurally very different. As a consequence of the charge redistribution, the comparative susceptibility of various sites in the heterocyclic molecules to an electrophilic attack may also depend on the response of the molecule to a prior attack on the heteroatom. The results indicate the need for dynamical reactivity considerations which reflect the variability in the molecular response to an incipient attack and the possibility that enhanced reactivity can be induced at certain sites by this response.     

An original route to immobilize an organic biocide onto a transparent tin dioxide electrode

Prevention of biofilm growth on surfaces immersed in an aqueous environment could be obtained either by the release of an antifouling biocide or by the presence of such compounds on the surface. In this paper it is shown, for the first time, that an electrochemical treatment performed in the presence of chlorides and proteins allows the immobilization of an organic biocide (chloramine) on the electrode. This electrode is a stable transparent conductive tin dioxide film coated on glass. It is polarized to oxidize chloride ions into hypochlorous acid, which reacts with the organic matter (bovine serum albumin) present at the electrode/solution interface, leading on one hand to the chlorination of the proteins with in particular the chloramine formation and on the other hand to the protein aggregation on the surface.     

Regioselective allylzincation of alkenylboronate

[reaction: see text] Boryl substitution on an olefin activates the olefinic double bond toward addition of an organozinc reagent. Addition of an allylic zinc reagent to an alkenylboronate thus takes place smoothly to afford a variety of gem-zincio/boryl species. Theoretical studies with density functional calculations on the reaction pathway revealed that the reaction proceeds via a zincio-ene reaction rather than a bora-Claisen rearrangement.     

Features and origin of the dynamic and the nonlinear piezoelectricity in poly(vinylidene fluoride)

Some of the piezoelectric coefficients of poly(vinylidene fluoride) are distinctly stress dependent. We report on their dependence on the frequency of an oscillatory stress excitation, on the amount of the remanent polarization in the sample materials, and on the magnitude of an offset stress. In order to explain the observed dynamic and nonlinear piezoelectric properties, a model is developed that attributes them to changes in the local polarization in an interphase between the crystalline and amorphous phases in this semicrystalline polymer.     

RNA-catalyzed RNA ligation on an external RNA template

Variants of the hc ligase ribozyme, which catalyzes ligation of the 3' end of an RNA substrate to the 5' end of the ribozyme, were utilized to evolve a ribozyme that catalyzes ligation reactions on an external RNA template. The evolved ribozyme catalyzes the joining of an oligonucleotide 3'-hydroxyl to the 5'-triphosphate of an RNA hairpin molecule. The ribozyme can also utilize various substrate sequences, demonstrating a largely sequence-independent mechanism for substrate recognition. The ribozyme also carries out the ligation of two oligonucleotides that are bound at adjacent positions on a complementary template. Finally, it catalyzes addition of mononucleoside 5'-triphosphates onto the 3' end of an oligonucleotide primer in a template-dependent manner. The development of ribozymes that catalyze polymerase-type reactions contributes to the notion that an RNA world could have existed during the early history of life on Earth.     

A flexible loop-type flow modulator for comprehensive two-dimensional gas chromatography

The present investigation is focused on a simple flow modulator (FM), for comprehensive two-dimensional gas chromatography (GC×GC). The interface is stable at high temperatures, and consists of a metallic disc (located inside the GC oven) with seven ports, which are connected to an auxiliary pressure source via two branches, to the first and second dimension, to a waste branch (linked to a needle valve) and to an exchangeable modulation loop (2 ports). The ports are connected via micro-channels, etched on one of the inner surfaces of the disc. Modulation is achieved using a two-way electrovalve, connected on one side to the additional pressure source, and to the two metal branches, on the other. An FM enantio-GC×polar-GC method (using a flame ionization detector) was optimized (a 40-μL loop was employed), for the analysis of essential oils. As an example, an application on spearmint oil is shown; the method herein proposed was subjected to validation. Finally, an FM GC×GC diesel experiment was carried out, using an apolar-polar column combination, to demonstrate the effectiveness of the modulator in the analysis of a totally different sample-type.     

Efficient evaluation of the accuracy of molecular quantum dynamics on an approximate analytical or interpolated ab initio potential energy surface

Ab initio electronic structure methods have reached a satisfactory accuracy for the calculation of static properties, but remain too expensive for quantum dynamical calculations. Recently, an efficient semiclassical method was proposed to evaluate the accuracy of quantum dynamics on an approximate potential without having to perform the expensive quantum dynamics on the accurate potential. Here, this method is applied for the first time to evaluate the accuracy of quantum dynamics on an approximate analytical or interpolated potential in comparison to the quantum dynamics on an accurate potential obtained by an ab initio electronic structure method. Specifically, the vibrational dynamics of H₂ on a Morse potential is compared with that on the full CI potential, and the photodissociation dynamics of CO₂ on a LEPS potential with that on the excited ¹Π surface computed at the EOM‐CCSD/aug‐cc‐pVDZ level of theory. Finally, the effect of discretization of a potential energy surface on the quantum dynamics is evaluated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem 110:2426–2435, 2010     

The effect of graphite nanoslabs on thermal oxidative destruction of polyethylene

The impact of graphite nanoslabs on thermal oxidation of polyethylene is studied via the methods of dynamic thermogravimetry and isothermal oxidation. Graphite nanoslabs are shown to exert an inhibiting effect on thermal oxidation of polyethylene, which leads to an increase in the induction period and in the oxygen-absorption rate. That there is an abnormal effect of the nanofiller content on the resistance to thermal oxidative destruction of composites, mainly for diffusion reasons, is established as well.     

Ion separation in imperfect fields of the quadrupole mass analyser Part IV. Theoretical applications

The theoretical aspects of ion separation in imperfect fields of the quadrupole mass analyser in the form of examples of practical simulation is the subject of this paper. The simulation results reveal that the field distortions cause an additional increase in energy spread while the ions pass the fringing fields. This phenomenon leads to an appearance of peak “shadows” in a mass spectrum. The location of major and precursor peaks in the mass spectrum depends on the relative deviation of their amplitudes of energy distribution. Analysis of distortions resulting from harmonic composition of the voltage waveform shows that the r.m.s. value of stable trajectories is proportional to that of an r.f. voltage which is independent of phase. The fluctuations of a general harmonic composition exert an influence on the transmission which depends more on first harmonic composition than on those of higher harmonics. Transmission is an exponential function of a general harmonic composition whereas with respect to phase it is an oscillatory function.     

Ruthenium‐catalyzed cyclizations of enynes via a ruthenacyclopentene intermediate: Development of three novel cyclizations controlled by a substituent on alkyne of enyne

Three novel ruthenium‐catalyzed cyclizations of enynes were developed. In each cyclization, a ruthenacyclopentene derived from enyne and Cp*RuCl(cod) is a common intermediate. When an enyne having an alkyl, an ester, or a formyl group on an alkyne was reacted with Cp*RuCl(cod) under ethylene gas, ethylene was inserted into the ruthenium‐sp² carbon bond of ruthenacyclopentene to afford ruthenacycloheptene, and β‐hydrogen elimination followed by reductive elimination occurred to give a cyclic compound having a 1,3‐diene moiety. When an acyl group was placed on the alkyne, the carbonyl oxygen coordinated to the ruthenium metal of ruthenacyclopentene to produce a ruthenium carbene complex, which reacted with ethylene to give a cyclic compound having a cyclopropane ring on the substituent. On the other hand, when the substituent on the alkyne was pent‐4‐enyl, insertion of an alkene part into ruthenacyclopentene followed by reductive elimination gave a tricyclic compound by a ruthenium‐catalyzed [2 + 2 + 2] cyclization of diene and an alkyne. DOI 10.1002/tcr.201100003     

Biosensors based on immobilization of biomolecules by electrogenerated polymer films

The concept and potentialities of electrochemical procedures of biomolecule immobilization are described. The entrapment of biomolecules within electropolymerized films consists of the application of an appropriate potential to an electrode soaked in an aqueous solution containing monomer and biomolecules. This method of biosensor construction is compared with a two-step procedure based on the adsorption of an aqueous amphiphilic pyrrole monomer-biomolecule mixture on an electrode followed by the electropolymerization of the adsorbed monomers. Another approach is based on the electrogeneration of polymer films functionalized by specific groups allowing subsequently the attachment of biomolecules. The immobilization of biomolecules on these films by covalent binding or noncovalent interactions is described.     

Oxidation of a two-dimensional hexagonal boron nitride monolayer: a first-principles study

Two-dimensional (2D) hexagonal boron-nitride oxide (h-BNO) is a structural analogue of graphene oxide. Motivated by recent experimental studies of graphene oxide, we have investigated the chemical oxidation of 2D h-BN sheet and the associated electronic properties of h-BNO. Particular emphasis has been placed on the most favorable site(s) for chemisorption of atomic oxygen, and on the migration barrier for an oxygen atom hopping to the top, bridge, or hollow site on the h-BN surface, as well as the most likely pathway for the dissociation of an oxygen molecule on the h-BN surface. We find that when an oxygen atom migrates on the h-BN surface, it is most likely to be over an N atom, but confined by three neighbor B atoms (forming a triangle ring). In general, chemisorption of an oxygen atom will stretch the B-N bond, and under certain conditions may even break the B-N bond. Depending on the initial location of the first chemisorbed O atom, subsequent oxidation tends to form an O domain or O chain on the h-BN sheet. The latter may lead to a synthetic strategy for the unzipping of the h-BN sheet along a zigzag direction. A better understanding of the oxidation of h-BN sheet has important implications for tailoring the properties of the h-BN sheet for applications.     

Characterization of a glow discharge plasma as a function of sampling orifice potential

Plasma diagnostic studies have been carried out on the discharge source of a commercial glow discharge quadrupole mass spectrometer. Plasma parameters were determined using an electrostatic probe with the objective of determining the dependence (if any) of these parameters on the voltage placed on an auxiliary electrode immersed in the plasma. The biased electrode utilized in this study was the sampling orifice element itself. Our results indicate that, for positive orifice voltages with respect to the grounded anode, variations in the plasma potential and ion energy can be correlated directly to the bias placed on the sampling orifice. The dependence of the electron temperature on this parameter is observed to be more complex in nature, and electron number densities show little significant variation with respect to sampling orifice bias. In addition, increased orifice voltages result in an increase in the ion signal intensity measured with the mass spectrometer. Based on the results obtained here, we feel that this increase is due primarily to an increase in ion transmission to the quadrupole arising from the increased ion energy.     

Estimation of limits of detection and determination in X-ray fluorescence analysis by the dependence of the relative standard deviation on analyte concentration

An experimental dependence of the relative standard deviation on analyte concentration of hyperbolic type, characterizing the precision of quantitative chemical analysis, was used to estimate the limits of detection and determination in the X-ray fluorescence analysis. A method is proposed for the determination of their values using the approximation of the experimental dependence of the relative standard deviation on the analyte concentration by a power function. The choice of the values of the relative standard deviation, being criteria for the estimation of these limits, is substantiated. A concept of the limits of detection and determination of an analytical procedure is formulated, according to which the limit of detection of an analytical procedure is an objective value depending only on the precision of determinations, and the limit of determination of an analytical procedure is a subjective value depending not only on the precision of determinations but also on the requirements to their limiting (admissible) accuracy. The limits of detection and determinations of an analytical procedure found by this approach completely characterize the possibilities of an analytical procedure in determining low concentrations of analytes. The proposed approach can be used for the estimation of the limits of detection and determination of analytical procedures and in other methods of chemical analysis with the hyperbolic dependence of the relative standard deviation on the analyte concentration.     

Transient leakage current in nematic LCDs

In this paper we present the transient leakage current measurement method for nematic liquid crystal displays as a technique to obtain information on the mobility and concentration of ionic impurities. The mobility depends on the temperature according to an Arrhenius-type relation, with an activation energy of about 0·3 eV. This dependence can be explained through the variation of the LC viscosity with temperature. The transported charge has also an Arrhenius relation, with an activation energy around 0·2 eV. Additionally, the influence of both a heat treatment and UV illumination on these parameters was investigated.     

Investigation of roman age pigments found on pottery fragments

This work deals with the study of the physico-chemical characteristics of pigments found on pottery fragments from an excavation in Vicenza (Contrà Pedemuro S. Biagio). The examined pigments were: a blue colour on a terracotta fragment; an olive green on a black pot bottom; yellow traces on a red depurated terracotta; an olive green plate bottom with an amaranth “a fresco” test; a deep red on a depurated terracotta; a white trace, again on a depurated terracotta. The techniques used were optical microscopy, scanning electron microscopy (SEM), equipped with an energy dispresive (EDS) microanalysis detector, X-ray powder diffraction (XRD) and Fourier transform infrared (FTIR) spectroscopy. Most of those techniques were non-destructive and able to provide the required results. All the pigments belonged to the group of basic colours, we did not find “precious” pigments. They have many similarities to those discovered in other European sites in France and Switzerland, witnessing the active trading exchange in which X^a Regio, Venetia et Histria played an important role.     

Motion of redox molecules in solution monitored by the highly-sensitive EQCM technique

The behavior of redox molecules in solution that was not detected by electrochemical techniques was measured by a highly-sensitive electrochemical quartz crystal microbalance (EQCM) technique that has been improved in this study to obtain a high sensitivity of EQCM measurement in solution. The improved EQCM technique allowed to monitor the motion of a redox molecule, that is an access of the molecule to an electrode surface and repulsion from the surface during redox. An EQCM technique currently in use has measured adsorption of redox molecules on an electrode surface or polymerization on the surface caused by a chemical reaction following redox, which exhibits an enough large mass change response to detect with an EQCM measurement. However, access and repulsion of redox molecule, which is a slight motion of the molecule near on electrode surface, has not been detected and investigated by an EQCM technique, because the mass change response seems to be very small. In this study, the redox behavior of methyl viologen on a bare gold surface, pyridinethiol surface and methylpyridinethiol surface was investigated. Although the three electrodes give the same cyclic voltammogram of methyl viologen, the three are different in QCM response recorded at the same time as the voltammetry. Access/repulsion of methyl viologen within an electrical double layer was monitored by the highly-sensitive EQCM technique.     

Applications of a travelling wave-based radio-frequency-only stacked ring ion guide

The use of radio-frequency (RF)-only ion guides for efficient transport of ions through regions of a mass spectrometer where the background gas pressure is relatively high is widespread in present instrumentation. Whilst multiple collisions between ions and the background gas can be beneficial, for example in inducing fragmentation and/or decreasing the spread in ion energies, the resultant reduction of ion axial velocity can be detrimental in modes of operation where a rapidly changing influx of ions to the gas-filled ion guide needs to be reproduced at the exit. In general, the RF-only ion guides presently in use are based on multipole rod sets. Here we report investigations into a new mode of ion propulsion within an RF ion guide based on a stack of ring electrodes. Ion propulsion is produced by superimposing a voltage pulse on the confining RF of an electrode and then moving the pulse to an adjacent electrode and so on along the guide to provide a travelling voltage wave on which the ions can surf. Through appropriate choice of the travelling wave pulse height, velocity and gas pressure it will be shown that the stacked ring ion guide with the travelling wave is effective as a collision cell in a tandem mass spectrometer where fast mass scanning or switching is required, as an ion mobility separator at pressures around 0.2 mbar, as an ion delivery device for enhancement of duty cycle on an orthogonal acceleration time-of-flight (oa-TOF) mass analyser, and as an ion fragmentation device at higher wave velocities.