Asymmetric (13)C-(13)C polarization transfer under dipolar-assisted rotational resonance in magic-angle spinning NMR

A two-dimensional (2D) homonuclear exchange NMR spectrum in solids often shows an asymmetric cross-peak pattern, which disturbs a quantitative analysis of peak intensities. When magnetization is prepared using cross polarization (CP), the asymmetry can naively be ascribed to nonequilibrium initial magnetization. We show, however, that the CP effect cannot fully explain the observed mixing-time dependence of the peak intensities in 2D (13)C-(13)C exchange spectra of [2,3-(13)C] l-alanine (2,3-Ala) under (13)C-(1)H dipolar-assisted rotational resonance (DARR) recoupling, which has recently been proposed for a broadband recoupling method under magic-angle spinning. We develop a theory to describe polarization transfer in a two-spin system under DARR recoupling. By taking into account the effects of the partial spectral overlap among (13)C signals, which is a unique feature of DARR recoupling, and (1)H-(1)H flip-flop exchange, we can successfully explain the observed mixing-time dependence of the peak intensities of 2D (13)C-(13)C DARR exchange spectra of 2,3-Ala. A simple initial-rate analysis is also examined.     

Structural analysis of alanine tripeptide with antiparallel and parallel beta-sheet structures in relation to the analysis of mixed beta-sheet structures in Samia cynthia ricini silk protein fiber using solid-state NMR spectroscopy

The structural analysis of natural protein fibers with mixed parallel and antiparallel beta-sheet structures by solid-state NMR is reported. To obtain NMR parameters that can characterize these beta-sheet structures, (13)C solid-state NMR experiments were performed on two alanine tripeptide samples: one with 100% parallel beta-sheet structure and the other with 100% antiparallel beta-sheet structure. All (13)C resonances of the tripeptides could be assigned by a comparison of the methyl (13)C resonances of Ala(3) with different [3-(13)C]Ala labeling schemes and also by a series of RFDR (radio frequency driven recoupling) spectra observed by changing mixing times. Two (13)C resonances observed for each Ala residue could be assigned to two nonequivalent molecules per unit cell. Differences in the (13)C chemical shifts and (13)C spin-lattice relaxation times (T(1)) were observed between the two beta-sheet structures. Especially, about 3 times longer T(1) values were obtained for parallel beta-sheet structure as compared to those of antiparallel beta-sheet structure, which could be explicable by the difference in the hydrogen-bond networks of both structures. This very large difference in T(1) becomes a good measure to differentiate between parallel or antiparallel beta-sheet structures. These differences in the NMR parameters found for the tripeptides may be applied to assign the parallel and antiparallel beta-sheet (13)C resonances in the asymmetric and broad methyl spectra of [3-(13)C]Ala silk protein fiber of a wild silkworm, Samia cynthia ricini.     

Separate-local-field NMR spectroscopy on half-integer quadrupolar nuclei

New approaches to the characterization of resonances in the solid-state NMR spectroscopy of half-integer quadrupolar nuclei are explored, on the basis of the acquisition of heteronuclear separate-local-field spectra on rotating solids. In their two-dimensional version, these experiments correlate for each chemical site a second-order quadrupolar MAS powder pattern with the dipolar MAS sideband pattern to nearby heteronuclei. As 3D NMR sequences, such 2D anisotropic correlation spectra become separated for inequivalent chemical sites along a third, isotropic dimension. Extending in such manner separate-local-field NMR approaches to quadrupoles facilitates the assignment of inequivalent resonances to specific structural environments, and provides new tools for the investigation of dynamics in solids. Details about these 2D and 3D NMR experiments are given, and their application is illustrated with 1H-23Na recoupling experiments on mononucleotides possessing multiple bound cations.     

NMR chemical shift powder pattern recoupling at high spinning speed and theoretical tensor evaluation applied to silk fibroin

The NMR pulse sequence RAI (recoupling of anisotropy information) has been improved to obtain powder patterns at high MAS spinning speeds. The 2D iso-aniso experiment displays the static chemical shift spectra on the indirect dimension and the MAS spectra on the direct dimension; hence overlapping chemical shift tensor patterns can be well resolved. This efficient technique is applicable to compounds containing (13)C sp(3) (C(alpha), C(beta)) and sp(2) (C=O) sites with higher chemical shift (CS) anisotropy (CSA), and the reliability of the method was tested here on the (13)C chemical shift tensors of polycrystalline glycine, alanine, and serine. Subsequently, the same experiment was applied to the native silk protein fibroin from Bombyx mori, which consists mainly of these three amino acids. Molecular dynamics (MD) simulations of the silk II crystal structure of Takahashi et al. (Takahashi et al. Int. J. Biol. Macromol. 1999, 24, 127-138) were carried out to study the influence of motions on the chemical shift tensors. The (13)C chemical shift tensors were calculated using the bond polarization theory BPT on 200 structures created by an MD simulation. Very good agreement of the theoretical chemical shift anisotropy values with the experimental NMR results was obtained. The tensor orientations in the protein structure could thus be reliably derived.     

Frequency-selective homonuclear dipolar recoupling in solid state NMR

We introduce a new approach to frequency-selective homonuclear dipolar recoupling in solid state nuclear magnetic resonance (NMR) with magic-angle spinning (MAS). This approach, to which we give the acronym SEASHORE, employs alternating periods of double-quantum recoupling and chemical shift evolution to produce phase modulations of the recoupled dipole-dipole interactions that average out undesired couplings, leaving only dipole-dipole couplings between nuclear spins with a selected pair of NMR frequencies. In principle, SEASHORE is applicable to systems with arbitrary coupling strengths and arbitrary sets of NMR frequencies. Arbitrary MAS frequencies are also possible, subject only to restrictions imposed by the pulse sequence chosen for double-quantum recoupling. We demonstrate the efficacy of SEASHORE in experimental (13)C NMR measurements of frequency-selective polarization transfer in uniformly (15)N, (13)C-labeled L-valine powder and frequency-selective intermolecular polarization transfer in amyloid fibrils formed by a synthetic decapeptide containing uniformly (15)N, (13)C-labeled residues.     

Structure and structural changes of the silk fibroin from Samia cynthia ricini using nuclear magnetic resonance spectroscopy

The structure of silk fibroin from a wild silkworm, S. c. ricini, the amino acid sequence of which consists of repeated poly-Ala and Gly-rich regions, was examined by using solution and solid-state NMR methods. The structural transition of the silk fibroin in aqueous solution was monitored by using 13C solution NMR spectroscopy as a function of temperature. The fast exchange with respect to the chemical shift between the helix and coil conformations was observed in the poly-Ala region and the slow conformational change from alpha-helix to random coil was observed for the Gly residue adjacent to the N-terminal Ala residue of the poly-Ala region. The torsion angles of several Ala and Gly residues in the model peptide, GGAGGGYGGDGG(A)12GGA-GDGYGAG, were determined by the conformation-dependent 13C chemical shifts, rotational echo double resonance (REDOR) and 2D spin-diffusion NMR methods. The solid-state NMR analysis leads to the precise silk structure before spinning, where the poly-Ala sequence takes a typical alpha-helix pattern with a tightly winded helical structure at both terminal regions of the poly-Ala sequence. This is expected to stabilize the alpha-helical structure of the poly-Ala region in S. c. ricini silk fibroin from the silkworm.     

WISE NMR characterization of nanoscale heterogeneity and mobility in supercontracted Nephila clavipes spider dragline silk

The addition of water to spider dragline silk results in fiber contraction to 50% its initial length and significant changes to the mechanical properties of the silk. This event has been termed supercontraction. A decrease in strength and increase in elasticity have been reported when the silk is in contact with water. Two-dimensional wide-line separation (WISE) nuclear magnetic resonance (NMR) is implemented to correlate (13)C chemical shifts with mobility by observing the corresponding (1)H line widths and line shapes in water-saturated spider dragline silk. The WISE NMR spectrum of the native silk exhibits (1)H line widths that are approximately 40 kHz for all carbon environments characteristic of a rigid organic system. In contrast, the water-saturated case displays a component of the (1)H line that is narrowed to approximately 5 kHz for the glycine C(alpha) and a newly resolved alanine helical environment while the alanine C(beta) corresponding to the beta-sheet conformation remains broad. These results indicate that water permeates the amorphous, glycine-rich matrix and not the crystalline, polyalanine beta-sheets. A delay time is added to the WISE NMR pulse sequence to monitor spin diffusion between the amorphous, mobile region and the crystalline domains. The time required for spin diffusion to reach spatial equilibrium is related to the length scale of the polyalanine crystallites. This technique is employed to measure crystalline domain sizes on the nanometer length scale in water-solvated spider dragline silk. These results provide further insight into the structure of spider silk and mechanism of supercontraction.     

Proton NMR studies of a polybenzimidazole in solution

Molecular aggregation of poly(4,4′-diphenyl ether-5,5′-bibenzimidazole)(PBI) in solution has been studied by high resolution proton NMR. PBI and model compounds have been synthesized, purified, and characterized. Proton resonances in the NMR spectrum of PBI are assigned by comparison with the proton resonances of the model compounds. Spectra are studied by total line-shape analysis, assuming each absorption curve to be Lorentzian. For PBI in N,N-dimethylacetamide (DMAc), the resonance due to the proton of a hydroxyl group formed by proton exchange between the imino group of PBI and the carbonyl group of DMAc is observed. The activation energy for the proton exchange, obtained from Arrhenius plots of the temperature dependence of the chemical shifts of the hydroxyl proton and the imino proton, was found to increase in the order corresponding to dissociation energy of the N? H···O?C hydrogen bond. The chemical shifts in the NMR spectra of PBI-DMAc solutions on the addition of LiCl are strongly dependent on the polymer-salt ratio; and thereby the coordination position of LiCl to PBI is tentatively identified, assuming a pseudocontact LiCl-induced shift. The dependence of the chemical shifts of protons in PBI on the dielectric constant of the solvent is demonstrated by using polar solvents of varying dielectric constant, such as N-methylpyrrolidone, dimethylsulfoxide, and formic acid. The viscosity of the PBI-DMAc solutions is reported at various temperatures and concentrations of LiCl. The results from viscometry are explicable in terms of the NMR observations.     

Assignment of 13C Cpmas Nmr Spectra of Crystalline Methyl β-D-Glucopyranoside and Sucrose using Deuterium Labelling and Interrupted Proton Decoupling

ABSTRACT

The solid state ¹³C cross polarization magic angle spinning (CPMAS) NMR spectra of partially deuterated samples of methyl β-D-glucopyranoside (1) and sucrose (2) were assigned using the spectral editing technique of interrupted proton decoupling (IPD). With the exception of the deuterium substituted CH₂OH each carbon resonance area of the IPD spectra, (after allowing for differences in magnetization) corresponded closely with the established level of deuteration at each site. A direct relationship between the level of deuteration and observed ¹³C resonance intensity facilitated a number of ¹³C CPMAS isotropic shift assignments without resorting to expensive and complex ¹³C labelling. In general, the procedure is excellent for assigning deuterium exchangeable methine carbon resonances in solid state carbohydrate spectra, however, the methodology is problematic when applied to the identification of CH₂ and CH₃ resonances, which are not readily recognizable from the characteristic position of their chemical shifts.     

A novel approach to the rapid assignment of 13C NMR spectra of major components of vegetable oils such as avocado,mango kernel and macadamia nut oils

Assignment of ¹³C nuclear magnetic resonance (NMR) spectra of major fatty acid components of South African produced vegetable oils was attempted using a method in which the vegetable oil was spiked with a standard triacylglycerol. This proved to be inadequate and therefore a new rapid and potentially generic graphical linear correlation method is proposed for assignment of the ¹³C NMR spectra of major fatty acid components of apricot kernel, avocado pear, grapeseed, macadamia nut, mango kernel and marula vegetable oils. In this graphical correlation method, chemical shifts of fatty acids present in a known standard triacylglycerol is plotted against the corresponding chemical shifts of fatty acids present in the vegetable oils. This new approach (under carefully defined conditions and concentrations) was found especially useful for spectrally crowded regions where significant peak overlap occurs and was validated with the well‐known ¹³C NMR spectrum of olive oil which has been extensively reported in the literature. In this way, a full assignment of the ¹³C{1H} NMR spectra of the vegetable oils, as well as tripalmitolein was readily achieved and the resonances belonging to the palmitoleic acid component of the triacylglycerols in the case of macadamia nut and avocado pear oil resonances were also assigned for the first time in the ¹³C NMR spectra of these oils. Copyright © 2009 John Wiley & Sons, Ltd.     

13C nuclear magnetic resonance studies on the stereochemical configurations of 2,4-dimethoxypentane and poly(alkyl vinyl ethers)

¹³C nuclear magnetic resonance (CMR) spectra were obtained for 2,4-dimethoxypentane, which is a model compound of poly(methyl vinyl ether), and the effects of the solvent and temperature on the chemical shifts were investigated. CMR spectra of poly-(alkyl vinyl ethers) were also determined and analyzed. The diad tacticities were obtained from β-methylene carbon resonances of poly(methyl vinyl ether), poly(ethyl vinyl ether), and poly(isobutyl vinyl ether), but not from those of poly(isopropyl vinyl ether) and poly(tert-butyl vinyl ether). The methoxyl carbon resonance of poly(methyl vinyl ether) and the ethoxyl methylene carbon resonance of poly(ethyl vinyl ether) showed splittings corresponding to pentad and triad sequences, respectively. The α-methine and quaternary carbon resonances of poly(tert-butyl vinyl ether) showed splittings corresponding to pentad and triad sequences, respectively.     

Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p

Sup35p is a prion protein found in yeast that contains a prion-forming domain characterized by a repetitive sequence rich in Gln, Asn, Tyr, and Gly amino acid residues. The peptide GNNQQNY7-13 is one of the shortest segments of this domain found to form amyloid fibrils, in a fashion similar to the protein itself. Upon dissolution in water, GNNQQNY displays a concentration-dependent polymorphism, forming monoclinic and orthorhombic crystals at low concentrations and amyloid fibrils at higher concentrations. We prepared nanocrystals of both space groups as well as fibril samples that reproducibly contain three (coexisting) structural forms and examined the specimens with magic angle spinning (MAS) solid-state nuclear magnetic resonance. 13C and 15N MAS spectra of both nanocrystals and fibrils reveal narrow resonances indicative of a high level of microscopic sample homogeneity that permitted resonance assignments of all five species. We observed variations in chemical shift among the three dominant forms of the fibrils which were indicated by the presence of three distinct, self-consistent sets of correlated NMR signals. Similarly, the monoclinic and orthorhombic crystals exhibit chemical shifts that differ from one another and from the fibrils. Collectively, the chemical shift data suggest that the peptide assumes five conformations in the crystals and fibrils that differ from one another in subtle but distinct ways. This includes variations in the mobility of the aromatic Tyr ring. The data also suggest that various structures assumed by the peptide may be correlated to the "steric zipper" observed in the monoclinic crystals.     

Symmetry-based constant-time homonuclear dipolar recoupling in solid state NMR

Constant-time dipolar recoupling pulse sequences are advantageous in structural studies by solid state nuclear magnetic resonance (NMR) with magic-angle spinning (MAS) because they yield experimental data that are relatively insensitive to radio-frequency pulse imperfections and nuclear spin relaxation processes. A new approach to the construction of constant-time homonuclear dipolar recoupling sequences is described, based on symmetry properties of the recoupled dipole-dipole interaction Hamiltonian under cyclic displacements in time with respect to the MAS sample rotation period. A specific symmetry-based pulse sequence called PITHIRDS-CT is introduced and demonstrated experimentally. (13)C NMR data for singly-(13)C-labeled amino acid powders and amyloid fibrils indicate the effectiveness of PITHIRDS-CT in measurements of intermolecular distances in solids. (15)N-detected and (13)C-detected measurements of intramolecular (15)N-(15)N distances in peptides with alpha-helical and beta-sheet structures indicate the utility of PITHIRDS-CT in studies of molecular conformations, especially measurements of backbone psi torsion angles in peptides containing uniformly (15)N- and (13)C-labeled amino acids.     

A 13C NMR study of the effect of γ-irradiation on the chain dynamics of poly(ethylene oxide)

A comparison of solid-state ¹³C nuclear magnetic resonance (NMR) spectra of virgin and vacuum γ-irradiated poly (ethylene oxide) (PEO) evidences marked differences. The unirradiated PEO shows a well-resolved amorphous resonance and a weak, broad envelope of crystalline resonances, while the irradiated PEO presents well-resolved resonances for both the crystalline and amorphous carbons. Upon recrystallization from the melt both PEO samples yield solid-state ¹³C NMR spectra that are closely similar to that of the virgin, unheated sample. Observation of both melt-recrystallized samples at ?60°C yields similar spectra with well-resolved crystalline resonances. Crosslinking is the predominant chemical change occurring during the γ-irradiation of PEO under vacuum and produces a change in the motional character of the crystalline phase. This change is not the result of a reduction in crystallinity as evidenced by differential scanning calorimetry (DSC) observations. The most probable explanation is that the crosslinks are concentrated at the surface of the crystalline lamellae with a resultant change in the low frequency molecular motions of the crystalline chains. This motional change shifts the T_1p^H such that the crystalline carbon nuclei can now be cross-polarized at room temperature and the resonance linewidth is reduced. Following melting and recrystallization the motional characteristics of the irradiated PEO are nearly identical to those of the unirradiated sample, probably as a result of a redistribution of the crosslinks throughout the amorphous phase during recrystallization.     

A new approach in 1D and 2D 13C high-resolution solid-state NMR spectroscopy of paramagnetic organometallic complexes by very fast magic-angle spinning

Novel 1D and multidimensional solid-state NMR (SSNMR) methods using very fast magic-angle spinning (VFMAS) (spinning speed > 20 kHz) for performing 13C high-resolution SSNMR of paramagnetic organometallic complexes are discussed. VFMAS removes a majority of 13C-1H and 1H-1H dipolar couplings, which are often difficult to remove by RF pulse techniques in paramagnetic complexes because of large paramagnetic shifts. In the first systematic approach using the unique feature of VFMAS for paramagnetic complexes, we demonstrate a means of obtaining well-resolved 1D and multidimensional 13C SSNMR spectra, sensitivity enhancements via cross polarization, and signal assignments, and applications of dipolar recoupling methods for nonlabeled paramagnetic organometallic complexes of moderate paramagnetic shifts ( approximately 800 ppm). Experimental results for powder samples of small nonlabeled coordination complexes at 1H frequencies of 400.2-400.3 MHz show that highly resolved 13C SSNMR spectra can be obtained under VFMAS, without requirements of 1H decoupling. Sensitivity enhancement in 13C SSNMR via cross polarization from 1H spins was demonstrated with an amplitude-sweep high-power CP sequence using strong RF fields ( approximately 100 kHz) available in the VFMAS probe. 13C CPMAS spectra of nonlabeled Cu(II)(dl-alanine)2.(H2O) and V(III)(acetylacetonate)3 (V(acac)3) show that it is possible to obtain high-resolution spectra for a small quantity ( approximately 15 mg) of nonlabeled paramagnetic organometal complexes within a few minutes under VFMAS. Experiments on Cu(II)(dl-alanine)2.(H2O) demonstrated that 1H-13C dipolar recoupling for paramagnetic organometal complexes can be performed under VFMAS by application of rotor-synchronous pi-pulses to 1H and 13C spins. The results also showed that signal assignments for 13CH, 13CH3, and 13CO groups in paramagnetic complexes are possible on the basis of the amount of 13C-1H dipolar dephasing induced by dipolar recoupling. Furthermore, the experimental 2D 13C/1H chemical-shift correlation NMR spectrum obtained for nonlabeled V(acac)3 exhibits well-resolved lines, which overlap in 1D 13C and 1H spectra. Signals for different chemical groups in the 2D spectrum are distinguished by the 13C-1H dipolar dephasing method combined with the 2D 13C/1H correlation NMR. The assignments offer information on the existence of nonequivalent ligands in the coordination complex in solids, without requiring a single-crystal sample.     

寡肽Asterin B和C溶液构象的NMR研究1: ^1H NMR归属及构象特征

Asterin B和C是从紫菀中分得的两个寡肽, 本文利用2D-NMR技术归属了它们的^1H NMR谱线, 并讨论了它们的构象特征。为进一步采用NMR和分子动力学(MD)方法研究它们的溶液构象奠定了基础。     

Analysis of quaternary carbon resonances of vinylidene chloride/methyl acrylate copolymers

Analysis of the quaternary carbon resonance signals of vinylidene chloride in vinylidene chloride (V)/methyl acrylate (M) copolymers at pentad level of compositional sensitivity is presented in this paper. The analysis has been done by resolving overlapped and complex resonance signals using an approach based on the intensities of resonances, chemical shift prediction and spectral simulation. Intensities of the resonance signals were calculated using the reactivity ratios optimized from the dyad and triad fractions, obtained from the ¹³C ¹H NMR data, by applying genetic algorithm. Joint confidence interval was obtained for the optimized reactivity ratios. The chemical shift modeling of the quaternary carbon resonance signals in terms of empirical additive parameters was done. The chemical shifts of overlapping pentad resonances were predicted from the empirical additive parameters optimized using genetic algorithm. Comparison of the intensities of pentad resonances assigned by chemical shift modeling and experimental intensities of resonances has been done to ascertain the assignments made. Comparison between simulated and experimental spectra at pentad level of sensitivity has been done.     

Reintroducing anisotropic interactions in magic-angle-spinning NMR of half-integer quadrupolar nuclei: 3D MQMAS

Selective reintroduction of anisotropic interactions such as the chemical shift anisotropy (CSA) and homonucler dipolar (HMD) coupling were implemented in a high-resolution NMR spectroscopy for half-integer quadrupolar nuclei. Rotary resonance recoupling (R(3)) combined with the multiple-quantum magic-angle spinning (MQMAS) in a three-dimensional (3D) experiment provides not only site-specific high-resolution spectra to yield the quadrupolar interaction parameters but also the CSA or HMD interaction parameters. This 3D experiment provides an avenue for the complete local structural information of half-integer quadrupolar nuclei. Three-dimensional MQMAS experiments incorporating R(3) of HMD and CSA interactions were demonstrated on model compounds containing (11)B, (23)Na, and (87)Rb nuclei.     

The observation of cis residues in poly(L-proline) in aqueous solution.

Proton Fourier transform NMR spectra at 270 MHz were obtained for three different molecular weight samples of poly(L-proline) in D2O. A weak, but clearly discernable, resonance at 4.3 ppm was observed in each case with an integrated intensity about 2-3% of the Calpha trans proton resonance. Based on the Torchia-Bovey assignment this resonance is attributed to the Calpha cis proton. The presence of cis residues, even in this small concentration, necessitates a reexamination of the conformational properties of this polymer. Definite conclusions cannot be reached from spectra obtained in organic solvents because of the much smaller separation between the cis and trans resonances.     

Isotropic chemical shifts in magic-angle spinning NMR spectra of proteins

Here we examine the effect of magic-angle spinning (MAS) rate upon lineshape and observed peak position for backbone carbonyl (C') peaks in NMR spectra of uniformly-(13)C,15N-labeled (U-(13)C,15N) solid proteins. 2D N-C' spectra of U-(13)C,15N microcrystalline protein GB1 were acquired at six MAS rates, and the site-resolved C' lineshapes were analyzed by numerical simulations and comparison to spectra from a sparsely labeled sample (derived from 1,3-(13)C-glycerol). Spectra of the U-(13)C,15N sample demonstrate large variations in the signal-to-noise ratio and peak positions, which are absent in spectra of the sparsely labeled sample, in which most 13C' sites do not possess a directly bonded 13CA. These effects therefore are a consequence of rotational resonance, which is a well-known phenomenon. Yet the magnitude of this effect pertaining to chemical shift assignment has not previously been examined. To quantify these effects in high-resolution protein spectra, we performed exact numerical two- and four-spin simulations of the C' lineshapes, which reproduced the experimentally observed features. Observed peak positions differ from the isotropic shift by up to 1.0 ppm, even for MAS rates relatively far (a few ppm) from rotational resonance. Although under these circumstances the correct isotropic chemical shift values may be determined through simulation, systematic errors are minimized when the MAS rate is equivalent to approximately 85 ppm for 13C. This moderate MAS condition simplifies spectral assignment and enables data sets from different labeling patterns and spinning rates to be used most efficiently for structure determination.