Dissociation kinetics of Mn2+ complexes of NOTA and DOTA

The kinetics of transmetallation of [Mn(nota)](-) and [Mn(dota)](2-) was investigated in the presence of Zn(2+) (5-50-fold excess) at variable pH (3.5-5.6) by (1)H relaxometry. The dissociation is much faster for [Mn(nota)](-) than for [Mn(dota)](2-) under both experimental and physiologically relevant conditions (t(?) = 74 h and 1037 h for [Mn(nota)](-) and [Mn(dota)](2-), respectively, at pH 7.4, c(Zn(2+)) = 10(-5) M, 25 °C). The dissociation of the complexes proceeds mainly via spontaneous ([Mn(nota)](-)k(0) = (2.6 ± 0.5) × 10(-6) s(-1); [Mn(dota)](2-)k(0) = (1.8 ± 0.6) × 10(-7) s(-1)) and proton-assisted pathways ([Mn(nota)](-)k(1) = (7.8 ± 0.1) × 10(-1) M(-1) s(-1); [Mn(dota)](2-)k(1) = (4.0 ± 0.6) × 10(-2) M(-1) s(-1), k(2) = (1.6 ± 0.1) × 10(3) M(-2) s(-1)). The observed suppression of the reaction rates with increasing Zn(2+) concentration is explained by the formation of a dinuclear Mn(2+)-L-Zn(2+) complex which is about 20-times more stable for [Mn(dota)](2-) than for [Mn(nota)](-) (K(MnLZn) = 68 and 3.6, respectively), and which dissociates very slowly (k(3)～10(-5) M(-1) s(-1)). These data provide the first experimental proof that not all Mn(2+) complexes are kinetically labile. The absence of coordinated water makes both [Mn(nota)](-) and [Mn(dota)](2-) complexes inefficient for MRI applications. Nevertheless, the higher kinetic inertness of [Mn(dota)](2-) indicates a promising direction in designing ligands for Mn(2+) complexation.     

A kinetic study of Mg+ and Mg-containing ions reacting with O3, O2, N2, CO2, N2O and H2O: implications for magnesium ion chemistry in the upper atmosphere

Reactions between Mg(+) and O(3), O(2), N(2), CO(2) and N(2)O were studied using the pulsed laser photo-dissociation at 193 nm of Mg(C(5)H(7)O(2))(2) vapour, followed by time-resolved laser-induced fluorescence of Mg(+) at 279.6 nm (Mg(+)(3(2)P(3/2)-3(2)S(1/2))). The rate coefficient for the reaction Mg(+) + O(3) is at the Langevin capture rate coefficient and independent of temperature, k(190-340 K) = (1.17 ± 0.19) × 10(-9) cm(3) molecule(-1) s(-1) (1σ error). The reaction MgO(+) + O(3) is also fast, k(295 K) = (8.5 ± 1.5) × 10(-10) cm(3) molecule(-1) s(-1), and produces Mg(+) + 2O(2) with a branching ratio of (0.35 ± 0.21), the major channel forming MgO(2)(+) + O(2). Rate data for Mg(+) recombination reactions yielded the following low-pressure limiting rate coefficients: k(Mg(+) + N(2)) = 2.7 × 10(-31) (T/300 K)(-1.88); k(Mg(+) + O(2)) = 4.1 × 10(-31) (T/300 K)(-1.65); k(Mg(+) + CO(2)) = 7.3 × 10(-30) (T/300 K)(-1.59); k(Mg(+) + N(2)O) = 1.9 × 10(-30) (T/300 K)(-2.51) cm(6) molecule(-2) s(-1), with 1σ errors of ±15%. Reactions involving molecular Mg-containing ions were then studied at 295 K by the pulsed laser ablation of a magnesite target in a fast flow tube, with mass spectrometric detection. Rate coefficients for the following ligand-switching reactions were measured: k(Mg(+)·CO(2) + H(2)O → Mg(+)·H(2)O + CO(2)) = (5.1 ± 0.9) × 10(-11); k(MgO(2)(+) + H(2)O → Mg(+)·H(2)O + O(2)) = (1.9 ± 0.6) × 10(-11); k(Mg(+)·N(2) + O(2)→ Mg(+)·O(2) + N(2)) = (3.5 ± 1.5) × 10(-12) cm(3) molecule(-1) s(-1). Low-pressure limiting rate coefficients were obtained for the following recombination reactions in He: k(MgO(2)(+) + O(2)) = 9.0 × 10(-30) (T/300 K)(-3.80); k(Mg(+)·CO(2) + CO(2)) = 2.3 × 10(-29) (T/300 K)(-5.08); k(Mg(+)·H(2)O + H(2)O) = 3.0 × 10(-28) (T/300 K)(-3.96); k(MgO(2)(+) + N(2)) = 4.7 × 10(-30) (T/300 K)(-3.75); k(MgO(2)(+) + CO(2)) = 6.6 × 10(-29) (T/300 K)(-4.18); k(Mg(+)·H(2)O + O(2)) = 1.2 × 10(-27) (T/300 K)(-4.13) cm(6) molecule(-2) s(-1). The implications of these results for magnesium ion chemistry in the atmosphere are discussed.     

Structural and oxygen binding properties of dimeric horse myoglobin

Myoglobin (Mb) stores dioxygen in muscles, and is a fundamental model protein widely used in molecular design. The presence of dimeric Mb has been known for more than forty years, but its structural and oxygen binding properties remain unknown. From an X-ray crystallographic analysis at 1.05 ? resolution, we found that dimeric metMb exhibits a domain-swapped structure with two extended α-helices. Each new long α-helix is formed by the E and F helices and the EF-loop of the original monomer, and as a result the proximal and distal histidines of the heme originate from different protomers. The heme orientation in the dimer was in the normal mode as in the monomer, but regulated faster from the reverse to normal orientation. The dimer possessed the oxygen binding property, although it exhibited a slightly higher oxygen binding affinity (～1.4 fold) compared to the monomer and showed no cooperativity for oxygen binding. The oxygen binding rate constant (k(on)) of the dimer ((14.0 ± 0.7) × 10(6) M(-1) s(-1)) was similar to that of the monomer, whereas the oxygen dissociation rate constant (k(off)) of the dimer (8 ± 1 s(-1)) was smaller than that of the monomer (12 ± 1 s(-1)). We attribute the similar k(on) values to their active site structures being similar, whereas the faster regulation of the heme orientation and the smaller k(off) in the dimer are presumably due to the slight change in the active site structure and/or more rigid structure compared to the monomer. These results show that domain swapping may be a new tool for protein engineering.     

An experimental and computational study of the reaction of ground-state sulfur atoms with carbon disulfide

The pulsed laser photolysis/resonance fluorescence technique was used to study the reaction of S((3)P(J)) with CS(2) in an Ar bath gas. Over 290-770 K pressure-dependent kinetics were observed and low- and high-pressure limiting rate constants were derived as k(0) = (11.5-0.0133 T/K) × 10(-31) cm(6) molecule(-2) s(-1) (error limits ± 20%) and k(∞) = (2.2 ± 0.6) × 10(-12) cm(3) molecule(-1) s(-1). Equilibration observed at 690-770 K yields a CS(2)-S bond dissociation enthalpy of 131.7 ± 4.0 kJ mol(-1) at 298 K. This agrees with computed thermochemistry for a spin-forbidden C(2V) adduct, estimated at the coupled-cluster single double triple level extrapolated to the infinite basis set limit. A pressure-independent pathway, assigned to abstraction, was observed from 690 to 1040 K and can be summarized as 1.14 × 10(-10) exp(-37.0 kJ mol(-1)/RT) cm(3) molecule(-1) s(-1) with error limits of ± 40%. The results are rationalized in terms of a computed potential energy surface and transition state theory and Troe's unimolecular formalism.     

Development of a new flow reactor for kinetic studies. Application to the ozonolysis of a series of alkenes

A new flow reactor has been developed to study ozonolysis reactions at ambient pressure and room temperature (297 ± 2 K). The reaction kinetics of O(3) with 4-methyl-1-pentene (4M1P), 2-methyl-2-pentene (2M2P), 2,4,4-trimethyl-1-pentene (tM1P), 2,4,4-trimethyl-2-pentene (tM2P) and α-pinene have been investigated under pseudo-first-order conditions. Absolute measurements of the rate coefficients have been carried out by recording O(3) consumption in excess of organic compound. Alkene concentrations have been determined by sampling adsorbent cartridges that were thermodesorbed and analyzed by gas-chromatography coupled to flame ionization detection. Complementary experimental data have been obtained using a 250 L Teflon smog chamber. The following ozonolysis rate coefficients can be proposed (in cm(3) molecule(-1) s(-1)): k(4M1P) = (8.23 ± 0.50) × 10(-18), k(2M2P) = (4.54 ± 0.96) × 10(-16), k(tM1P) = (1.48 ± 0.11) × 10(-17), k(tM2P) = (1.25 ± 0.10) × 10(-16), and k(α-pinene) = (1.29 ± 0.16) × 10(-16), in very good agreement with literature values. The products of tM2P ozonolysis have been investigated, and branching ratios of (21.4 ± 2.8)% and (73.9 ± 7.3)% have been determined for acetone and 2,2-dimethyl-propanal, respectively. Additionally, a new nonoxidized intermediate, 2-methyl-1-propene, has been identified and quantified. A topological SAR analysis was also performed to strengthen the consistency of the kinetic data obtained with this new flow reactor.     

Kinetics of elementary steps in the reactions of atomic bromine with isoprene and 1,3-butadiene under atmospheric conditions

Laser flash photolysis of CF(2)Br(2) has been coupled with time-resolved detection of atomic bromine by resonance fluorescence spectroscopy to investigate the gas-phase kinetics of early elementary steps in the Br-initiated oxidations of isoprene (2-methyl-1,3-butadiene, Iso) and 1,3-butadiene (Bu) under atmospheric conditions. At T ≥ 526 K, measured rate coefficients for Br + isoprene are independent of pressure, suggesting that hydrogen transfer (1a) is the dominant reaction pathway. The following Arrhenius expression adequately describes all kinetic data at 526 K ≤ T ≤ 673 K: k(1a)(T) = (1.22 ± 0.57) × 10(-11) exp[(-2100 ± 280)/T] cm(3) molecule(-1) s(-1) (uncertainties are 2σ and represent precision of the Arrhenius parameters). At 271 K ≤ T ≤ 357 K, kinetic evidence for the reversible addition reactions Br + Iso ? Br-Iso (k(1b), k(-1b)) and Br + Bu ? Br-Bu (k(3b), k(-3b)) is observed. Analysis of the approach to equilibrium data allows the temperature- and pressure-dependent rate coefficients k(1b), k(-1b), k(3b), and k(-3b) to be evaluated. At atmospheric pressure, addition of Br to each conjugated diene occurs with a near-gas-kinetic rate coefficient. Equilibrium constants for the addition/dissociation reactions are obtained from k(1b)/k(-1b) and k(3b)/k(-3b), respectively. Combining the experimental equilibrium data with electronic structure calculations allows both second- and third-law analyses of thermochemistry to be carried out. The following thermochemical parameters for the addition reactions 1b and 3b at 0 and 298 K are obtained (units are kJ mol(-1) for Δ(r)H and J mol(-1) K(-1) for Δ(r)S; uncertainties are accuracy estimates at the 95% confidence level): Δ(r)H(0)(1b) = -66.6 ± 7.1, Δ(r)H(298)(1b) = -67.5 ± 6.6, and Δ(r)S(298)(3b) = -93 ± 16; Δ(r)H(0)(3b) = -62.4 ± 9.0, Δ(r)H(298)(3b) = -64.5 ± 8.5, and Δ(r)S(298)(3b) = -94 ± 20. Examination of the effect of added O(2) on Br kinetics under conditions where reversible adduct formation is observed allows the rate coefficients for the Br-Iso + O(2) (k(2)) and Br-Bu + O(2) (k(4)) reactions to be determined. At 298 K, we find that k(2) = (3.2 ± 1.0) × 10(-13) cm(3) molecule(-1) s(-1) independent of pressure (uncertainty is 2σ, precision only; pressure range is 25-700 Torr) whereas k(4) increases from 3.2 to 4.7 × 10(-13) cm(3) molecule(-1) s(-1) as the pressure increases from 25 to 700 Torr. Our results suggest that under atmospheric conditions, Br-Iso and Br-Bu react with O(2) to produce peroxy radicals considerably more rapidly than they undergo unimolecular decomposition. Hence, the very fast addition reactions appear to control the rates of Br-initiated formation of Br-Iso-OO and Br-Bu-OO radicals under atmospheric conditions. The peroxy radicals are relatively weakly bound, so conjugated diene regeneration via unimolecular decomposition reactions, though unimportant on the time scale of the reported experiments (milliseconds), is likely to compete effectively with bimolecular reactions of peroxy radicals under relatively warm atmospheric conditions as well as in 298 K competitive kinetics experiments carried out in large chambers.     

Guest binding dynamics with cucurbit[7]uril in the presence of cations

The binding dynamics of R-(+)-2-naphthyl-1-ethylammonium cation (NpH(+)) with cucurbit[7]uril (CB[7]) was investigated. Competitive binding with Na(+) or H(3)O(+) cations enabled the reaction to be slowed down sufficiently for the kinetics to be studied by fluorescence stopped-flow experiments. The binding of two Na(+) cations to CB[7], i.e., CB[7]·Na(+) (K(01) = 130 ± 10 M(-1)) and Na(+)·CB[7]·Na(+) (K(02) = 21 ± 2 M(-1)), was derived from the analysis of binding isotherms and the kinetic studies. NpH(+) binds only to free CB[7] ((1.06 ± 0.05) × 10(7) M(-1)), and the association rate constant of (6.3 ± 0.3) × 10(8) M(-1) s(-1) is 1 order of magnitude lower than that for a diffusion-controlled process and much higher than the association rate constant previously determined for other CB[n] systems. The high equilibrium constant for the NpH(+)@CB[7] complex is a consequence of the slow dissociation rate constant of 55 s(-1). The kinetics results showed that formation of a complex between a positively charged guest with CB[n] can occur at a rate close to the diffusion-controlled limit with no detection of a stable exclusion complex.     

Fabrication of high-aspect-ratio poly(2-hydroxyethyl methacrylate) brushes patterned on silica surfaces by very-large-scale integration process

We used a novel fabricated process including electron beam and isotropic oxygen plasma to generate signal line patterns of polymerized 2-hydroxyethyl methacrylate (HEMA) on patterned Si(1 0 0) surfaces. Isotropic oxygen plasma was introduced to enhance the resolutions of the line and dots patterns of the PHEMA brush are approached to 350 nm and 2 μm, respectively. We established the surface grafting polymerization kinetics of the PHEMA chains on silicon surface by to fit the thickness and number-average molecular weight (M(n)). The propagation rate (k(p)) and active grafting specie deactivation rate (k(d)) lies in the range of ~3.6 × 10(-2) s(-1) M(-1) and 4.8 × 10(-5) s(-1), respectively. The measured thicknesses by ellipsometer and analyzed M(n) of "free" PHEMA by gel permeation chromatography (GPC) are fitted well by the polymerization kinetic model. In addition, aspect-ratios (height/width) are used to define the shape of patterned PHEMA brushes. The high-aspect-ratio of the PHEMA brush line with width of 350 nm is 0.27. We use a graft polymerization/solvent immersion method for generating various patterns of polymer brushes to investigate the deformation of the PHEMA brush through aspect-ratios.     

Kinetic study of the daytime atmospheric fate of (z)-3-hexenal

Rate coefficients for three daytime atmospheric reactions of (Z)-3-hexenal (3HA)-photolysis (J(1)), reaction with OH radicals (k(2)), and reaction with ozone (k(3))-were measured at 760 Torr and 298 K using a 6 m(3) photochemical reaction chamber. The UV absorption cross sections (σ(3HA)(λ)) were obtained in the wavelength range 240-350 nm. The photodissociation rate of 3HA relative to that of NO(2) was measured by a solar simulator at 760 Torr and was determined to be J(1)/J(NO2) = (4.7 ± 0.4) × 10(-3). Using the obtained σ(3HA)(λ) and J(1)/J(NO2), the effective photodissociation quantum yield was calculated to be Φ(3HA) = 0.25 ± 0.06. The rate coefficient for the reaction with OH radicals was measured by the relative rate method with three reference compounds and was determined to be k(2) = (6.9 ± 0.9) × 10(-11) cm(3) molecule(-1) s(-1). The rate coefficient for the reaction with ozone was measured by an absolute method and was determined to be k(3) = (3.5 ± 0.2) × 10(-17) cm(3) molecule(-1) s(-1). Using the obtained rate coefficients, the daytime atmospheric lifetime of 3HA was estimated.     

Self-assembled donor comprising quantum dots and fluorescent proteins for long-range fluorescence resonance energy transfer

We report on the development of a self-assembled donor for long-range fluorescence resonance energy transfer (FRET). To this end, a three-chromophore FRET (3Ch-FRET) system was constructed, which consists of a luminescent quantum dot (QD), enhanced yellow fluorescent proteins (EYFP), and Atto647-dye-modified oligonucleotides. The system was assembled by electrostatic binding of covalent EYFP-ssDNA conjugate to the QD and subsequent hybridization with complementary oligonucleotides labeled with Atto647-dye. The final conjugates comprise three different two-chromophore FRET (2Ch-FRET) subsystems, QD/EYFP, QD/Atto647, and EYFP/Atto647, respectively, which were studied in detail by steady-state and time-resolved photoluminescence measurements. The helicity of DNA allowed us to control donor/acceptor separations and thus enabled the detailed analysis of the various FRET processes. We found that the 2Ch-FRET and the 3Ch-FRET (QD/EYFP/Atto647) systems revealed FRET efficiencies and transfer rates that were affected by the availability of distinct FRET pathways. The derived energy-transfer efficiencies and F?rster radii indicated that within the 3Ch-FRET system, the 2Ch-FRET subsystem QD/EYFP showed highest FRET efficiencies ranging from 64 to 72%. Thus, it can be used as a powerful donor system that combines the intrinsic advantages of QDs (large and spectrally broad absorption cross section) and EYFP (high quantum yield) and enables long-distance FRET processes for donor-acceptor distances of up to 13 nm.     

Rate constants for the gas-phase reactions of OH and O3 with β-ocimene, β-myrcene, and α- and β-farnesene as a function of temperature

The rate constants for the gas-phase reactions of hydroxyl radicals and ozone with the biogenic hydrocarbons β-ocimene, β-myrcene, and α- and β-farnesene were measured using the relative rate technique over the temperature ranges 313-423 (for OH) and 298-318 K (for O?) at about 1 atm total pressure. The OH radicals were generated by photolysis of H?O?, and O? was produced from the electrolysis of O?. Helium was used as the diluent gas. The reactants were detected by online mass spectrometry, which resulted in high time resolution, allowing large amounts of data to be collected and used in the determination of the Arrhenius parameters. The following Arrhenius expressions have been determined for these reactions (in units of cm3 molecules?1 s?1): for β-ocimene + OH, k = (4.35(-0.66)(+0.78)) × 10?11 exp[(579 ± 59)/T]; for β-ocimene + O?, k = (3.15(-0.95)(+1.36)) × 10?1? exp[-(626 ± 110)/T]; for β-myrcene + O?, k = (2.21(-0.66)(+0.94)) × 10?1? exp[-(520 ± 109)/T]; for α-farnesene + OH, k(OH) = (2.19 ± 0.11) × 10?1? for 23-413 K; for α-farnesene + O?, k = (3.52(-2.54)(+9.09)) × 10?12 exp[-(2589 ± 393)/T]; for β-farnesene + OH, k(OH) = (2.88 ± 0.15) × 10?1? for 323-423 K; for β-farnesene + O?, k = (1.81(-1.19)(+3.46)) × 10?12 exp[-(2347 ± 329)/T]. The Arrhenius parameters here are the first to be reported. The reactions of α- and β-farnesene with OH showed no significant temperature dependence. Atmospheric residence times due to reactions with OH and O? were also presented.     

Kinetics of n-butoxy and 2-pentoxy isomerization and detection of primary products by infrared cavity ringdown spectroscopy

The primary products of n-butoxy and 2-pentoxy isomerization in the presence and absence of O(2) have been detected using pulsed laser photolysis-cavity ringdown spectroscopy (PLP-CRDS). Alkoxy radicals n-butoxy and 2-pentoxy were generated by photolysis of alkyl nitrite precursors (n-butyl nitrite or 2-pentyl nitrite, respectively), and the isomerization products with and without O(2) were detected by infrared cavity ringdown spectroscopy 20 μs after the photolysis. We report the mid-IR OH stretch (ν(1)) absorption spectra for δ-HO-1-C(4)H(8)?, δ-HO-1-C(4)H(8)OO?, δ-HO-1-C(5)H(10)?, and δ-HO-1-C(5)H(10)OO?. The observed ν(1) bands are similar in position and shape to the related alcohols (n-butanol and 2-pentanol), although the HOROO? absorption is slightly stronger than the HOR? absorption. We determined the rate of isomerization relative to reaction with O(2) for the n-butoxy and 2-pentoxy radicals by measuring the relative ν(1) absorbance of HOROO? as a function of [O(2)]. At 295 K and 670 Torr of N(2) or N(2)/O(2), we found rate constant ratios of k(isom)/k(O(2)) = 1.7 (±0.1) × 10(19) cm(-3) for n-butoxy and k(isom)/k(O(2)) = 3.4(±0.4) × 10(19) cm(-3) for 2-pentoxy (2σ uncertainty). Using currently known rate constants k(O(2)), we estimate isomerization rates of k(isom) = 2.4 (±1.2) × 10(5) s(-1) and k(isom) ≈ 3 × 10(5) s(-1) for n-butoxy and 2-pentoxy radicals, respectively, where the uncertainties are primarily due to uncertainties in k(O(2)). Because isomerization is predicted to be in the high pressure limit at 670 Torr, these relative rates are expected to be the same at atmospheric pressure. Our results include corrections for prompt isomerization of hot nascent alkoxy radicals as well as reaction with background NO and unimolecular alkoxy decomposition. We estimate prompt isomerization yields under our conditions of 4 ± 2% and 5 ± 2% for n-butoxy and 2-pentoxy formed from photolysis of the alkyl nitrites at 351 nm. Our measured relative rate values are in good agreement with and more precise than previous end-product analysis studies conducted on the n-butoxy and 2-pentoxy systems. We show that reactions typically neglected in the analysis of alkoxy relative kinetics (decomposition, recombination with NO, and prompt isomerization) may need to be included to obtain accurate values of k(isom)/k(O(2)).     

Laboratory studies of CHF2CF2CH2OH and CF3CF2CH2OH: UV and IR absorption cross sections and OH rate coefficients between 263 and 358 K

Fluorinated alcohols, such as 2,2,3,3-tetrafluoropropanol (TFPO, CHF(2)CF(2)CH(2)OH) and 2,2,3,3,3-pentafluoropropanol (PFPO, CF(3)CF(2)CH(2)OH), can be potential replacements of hydrofluorocarbons with large global warming potentials, GWPs. IR absorption cross sections for TFPO and PFPO were determined between 4000 and 500 cm(-1) at 298 K. Integrated absorption cross sections (S(int), base e) in the 4000-600 cm(-1) range are (1.92 ± 0.34) × 10(-16) cm(2) molecule(-1) cm(-1) and (2.05 ± 0.50) × 10(-16) cm(2) molecule(-1) cm(-1) for TFPO and PFPO, respectively. Uncertainties are at a 95% confidence level. Ultraviolet absorption spectra were also recorded between 195 and 360 nm at 298 K. In the actinic region (λ > 290 nm), an upper limit of 10(-23) cm(2) molecule(-1) for the absorption cross sections (σ(λ)) was reported. Photolysis in the troposphere is therefore expected to be a negligible loss for these fluoropropanols. In addition, absolute rate coefficients for the reaction of OH radicals with CHF(2)CF(2)CH(2)OH (k(1)) and CF(3)CF(2)CH(2)OH (k(2)) were determined as a function of temperature (T = 263-358 K) by the pulsed laser photolysis/laser induced fluorescence (PLP-LIF) technique. At room temperature, the average values obtained were k(1) = (1.85 ± 0.07) × 10(-13) cm(3) molecule(-1) s(-1) and k(2) = (1.19 ± 0.03) × 10(-13) cm(3) molecule(-1) s(-1). The observed temperature dependence of k(1)(T) and k(2)(T) is described by the following expressions: (1.35 ± 0.23) × 10(-12) exp{-(605 ± 54)/T} and (1.36 ± 0.19) × 10(-12) exp{-(730 ± 43)/T} cm(3) molecule(-1) s(-1), respectively. Since photolysis of TFPO and PFPO in the actinic region is negligible, the tropospheric lifetime (τ) of these species can be approximated by the lifetime due to the homogeneous reaction with OH radicals. Global values of τ(OH) were estimated to be of 3 and 4 months for TFPO and PFPO, respectively. GWPs relative to CO(2) at a time horizon of 500 years were calculated to be 8 and 12 for TFPO and PFPO, respectively. Despite the higher GWP relative to CO(2), these species are not expected to significantly contribute to the greenhouse effect in the next decades since they are short-lived species and will not accumulate in the troposphere even as their emissions grow up.     

Solution-phase mechanistic study and solid-state structure of a tris(bipyridinium radical cation) inclusion complex

The ability of the diradical dicationic cyclobis(paraquat-p-phenylene) (CBPQT(2(?+))) ring to form inclusion complexes with 1,1'-dialkyl-4,4'-bipyridinium radical cationic (BIPY(?+)) guests has been investigated mechanistically and quantitatively. Two BIPY(?+) radical cations, methyl viologen (MV(?+)) and a dibutynyl derivative (V(?+)), were investigated as guests for the CBPQT(2(?+)) ring. Both guests form trisradical complexes, namely, CBPQT(2(?+))?MV(?+) and CBPQT(2(?+))?V(?+), respectively. The structural details of the CBPQT(2(?+))?MV(?+) complex, which were ascertained by single-crystal X-ray crystallography, reveal that MV(?+) is located inside the cavity of the ring in a centrosymmetric fashion: the 1:1 complexes pack in continuous radical cation stacks. A similar solid-state packing was observed in the case of CBPQT(2(?+)) by itself. Quantum mechanical calculations agree well with the superstructure revealed by X-ray crystallography for CBPQT(2(?+))?MV(?+) and further suggest an electronic asymmetry in the SOMO caused by radical-pairing interactions. The electronic asymmetry is maintained in solution. The thermodynamic stability of the CBPQT(2(?+))?MV(?+) complex was probed by both isothermal titration calorimetry (ITC) and UV/vis spectroscopy, leading to binding constants of (5.0 ± 0.6) × 10(4) M(-1) and (7.9 ± 5.5) × 10(4) M(-1), respectively. The kinetics of association and dissociation were determined by stopped-flow spectroscopy, yielding a k(f) and k(b) of (2.1 ± 0.3) × 10(6) M(-1) s(-1) and 250 ± 50 s(-1), respectively. The electrochemical mechanistic details were studied by variable scan rate cyclic voltammetry (CV), and the experimental data were compared digitally with simulated data, modeled on the proposed mechanism using the thermodynamic and kinetic parameters obtained from ITC, UV/vis, and stopped-flow spectroscopy. In particular, the electrochemical mechanism of association/dissociation involves a bisradical tetracationic intermediate CBPQT((2+)(?+))?V(?+) inclusion complex; in the case of the V(?+) guest, the rate of disassociation (k(b) = 10 ± 2 s(-1)) was slow enough that it could be detected and quantified by variable scan rate CV. All the experimental observations lead to the speculation that the CBPQT((2+)(?+)) ring of the bisradical tetracation complex might possess the unique property of being able to recognize both BIPY(?+) radical cation and π-electron-rich guests simultaneously. The findings reported herein lay the foundation for future studies where this radical-radical recognition motif is harnessed particularly in the context of mechanically interlocked molecules and increases our fundamental understanding of BIPY(?+) radical-radical interactions in solution as well as in the solid-state.     

Rates of water exchange for two cobalt(II) heteropolyoxotungstate compounds in aqueous solution

Polyoxometalate ions are used as ligands in water-oxidation processes related to solar energy production. An important step in these reactions is the association and dissociation of water from the catalytic sites, the rates of which are unknown. Here we report the exchange rates of water ligated to Co(II) atoms in two polyoxotungstate sandwich molecules using the (17)O-NMR-based Swift-Connick method. The compounds were the [Co(4)(H(2)O)(2)(B-α-PW(9)O(34))(2)](10-) and the larger αββα-[Co(4)(H(2)O)(2)(P(2)W(15)O(56))(2)](16-) ions, each with two water molecules bound trans to one another in a Co(II) sandwich between the tungstate ligands. The clusters, in both solid and solution state, were characterized by a range of methods, including NMR, EPR, FT-IR, UV-Vis, and EXAFS spectroscopy, ESI-MS, single-crystal X-ray crystallography, and potentiometry. For [Co(4)(H(2)O)(2)(B-α-PW(9)O(34))(2)](10-) at pH 5.4, we estimate: k(298)=1.5(5)±0.3×10(6) s(-1), ΔH(≠)=39.8±0.4 kJ mol(-1), ΔS(≠)=+7.1±1.2 J mol(-1) K(-1) and ΔV(≠)=5.6 ±1.6 cm(3) mol(-1). For the Wells-Dawson sandwich cluster (αββα-[Co(4)(H(2)O)(2)(P(2)W(15)O(56))(2)](16-)) at pH 5.54, we find: k(298)=1.6(2)±0.3×10(6) s(-1), ΔH(≠)=27.6±0.4 kJ mol(-1) ΔS(≠)=-33±1.3 J mol(-1) K(-1) and ΔV(≠)=2.2±1.4 cm(3) mol(-1) at pH 5.2. The molecules are clearly stable and monospecific in slightly acidic solutions, but dissociate in strongly acidic solutions. This dissociation is detectable by EPR spectroscopy as S=3/2 Co(II) species (such as the [Co(H(2)O)(6)](2+) monomer ion) and by the significant reduction of the Co-Co vector in the XAS spectra.     

A Predictive Approach Using Fractal Analysis for Analyte-Receptor Binding and Dissociation Kinetics for Surface Plasmon Resonance Biosensor Applications

A predictive approach using fractal analysis is presented for analyte-receptor binding and dissociation kinetics for biosensor applications. Data taken from the literature may be modeled, in the case of binding using a single-fractal analysis or a dual-fractal analysis. The dual-fractal analysis represents a change in the binding mechanism as the reaction progresses on the surface. A single-fractal analysis is adequate to model the dissociation kinetics in the examples presented. Predictive relationships developed for the binding and the affinity (k(diss)/k(bind)) as a function of the analyte concentration are of particular value since they provide a means by which the binding and the affinity rate coefficients may be manipulated. Relationships are also presented for the binding and the dissociation rate coefficients and for the affinity as a function of their corresponding fractal dimension, D(f), or the degree of heterogeneity that exists on the surface. When analyte-receptor binding or dissociation is involved, an increase in the heterogeneity on the surface (increase in D(f)) leads to an increase in the binding and in the dissociation rate coefficient. It is suggested that an increase in the degree of heterogeneity on the surface leads to an increase in the turbulence on the surface owing to the irregularities on the surface. This turbulence promotes mixing, minimizes diffusional limitations, and leads subsequently to an increase in the binding and in the dissociation rate coefficient. The binding and the dissociation rate coefficients are rather sensitive to the degree of heterogeneity, D(f,bind) (or D(f1)) and D(f,diss), respectively, that exists on the biosensor surface. For example, the order of dependence on D(f,bind) (or D(f1)) and D(f2) is 6.69 and 6.96 for k(bind,1) (or k(1)) and k(2), respectively, for the binding of 0.085 to 0.339 μM Fab fragment 48G7(L)48G7(H) in solution to p-nitrophenyl phosphonate (PNP) transition state analogue immobilized on a surface plasmon resonance (SPR) biosensor. The order of dependence on D(f,diss) (or D(f,d)) is 3.26 for the dissociation rate coefficient, k(diss), for the dissociation of the 48G7(L)48G7(H)-PNP complex from the SPR surface to the solution. The predictive relationships presented for the binding and the affinity as a function of the analyte concentration in solution provide further physical insights into the reactions on the surface and should assist in enhancing SPR biosensor performance. In general, the technique is applicable to other reactions occurring on different types of biosensor surfaces and other surfaces such as cell-surface reactions. Copyright 2000 Academic Press.     

Kinetic investigation of the OH radical and Cl atom initiated degradation of unsaturated ketones at atmospheric pressure and 298 K

Rate coefficients for the reactions of hydroxyl radicals and chlorine atoms with 4-hexen-3-one, 5-hexen-2-one, and 3-penten-2-one have been determined at 298 ± 2 K and atmospheric pressure of air. Rate coefficients for the compounds were determined using a relative kinetic technique with different reference compounds. The experiments were performed in a large photoreactor (480 L) using in situ FTIR spectroscopy to monitor the decay of reactants. From the different measurements the following rate coefficients (in units of cm(3) molecule(-1) s(-1)) have been determined: k(1)(OH + 4-hexen-3-one) = (9.04 ± 2.12) × 10(-11), k(2)(OH + 5-hexen-2-one) = (5.18 ± 1.27) × 10(-11), k(3)(OH + 3-penten-2-one) = (7.22 ± 1.74) × 10(-11), k(4)(Cl + 4-hexen-3-one) = (3.00 ± 0.58) × 10(-10), k(5)(Cl + 5-hexen-2-one) = (3.15 ± 0.50) × 10(-10) and k(6)(Cl + 3-penten-2-one) = (2.53 ± 0.54) × 10(-10). The reactivity of the double bond in alkenes and unsaturated ketones at 298 K toward addition of OH radicals and Cl atoms are compared and discussed. In addition, a correlation between the reactivity of the unsaturated ketones toward OH radicals and the HOMO of the compounds is presented. On the basis of the kinetic measurements, the tropospheric lifetimes of 4-hexen-3-one, 5-hexen-2-one, and 3-penten-2-one with respect to their reaction with hydroxyl radicals are estimated to be between 2 and 3 h.     

Fast measurement of binding kinetics with dual slope SPR microchips

We demonstrate a new dual slope SPR technique that is ten-fold faster than the conventional step-response method. The new scheme utilizes rapid slope-based measurements followed by rapid reset, and it separates association and dissociation half reaction measurements at two separate sites inside a dual-chamber PDMS microfluidic chip. For a model CAII-ABS test system, the association and dissociation slopes were measured in 30 seconds compared to 5 minutes for step-response. The values of k(a) and k(d) calculated from the slope method are 3.66 ± 0.19 × 10(3) M(-1) s(-1) and 4.83 ± 0.17 × 10(-2) s(-1), respectively, matching well with step-response values while facilitating ~10 to 15 fold faster detection and quantification.     

Kinetics of the NCCO + NO2 reaction

The kinetics of the NCCO + NO(2) reaction was studied by transient infrared laser absorption spectroscopy. The total rate constant of the reaction was measured to be k = (2.1 ± 0.1) × 10(-11) cm(3) molecule(-1) s(-1) at 298 K. Detection of products and consideration of possible secondary chemistry shows that CO(2) + NO + CN is the primary product channel. The rate constants of the NCCO + CH(4) and NCCO + C(2)H(4) reactions were also measured, obtaining upper limits of k (NCCO + CH(4)) ≤ 7.0 × 10(-14) cm(3) molecule(-1) s(-1) and k (NCCO + C(2)H(4)) ≤ 5.0 × 10(-15) cm(3) molecule(-1) s(-1). Ab initio calculations on the singlet and triplet potential energy surfaces at B3LYP/6-311++G**//CCSD(T)/6-311++G** levels of theory show that the most favorable reaction pathway occurs on the singlet surface, leading to CO(2) + NO + CN products, in agreement with experiment.     

高锰酸钾与乙酰丙酮快速反应动力学

乙酰丙酮CH_2(COCH_3)_2(简写为Hacac)是重要的有机合成中间体,也是柠檬酸在人体内代谢的中间物.为了进一步掌握柠檬酸氧化的后续变化,我组观测了前人未曾报导过的乙酰丙酮与高锰酸钾在酸性介质中的快速反应.该反应从现象上可明显分为两个阶段:第一个阶段是MnO_4~-的紫色迅速消褪,反应体系转变为浅绿色溶液;第二阶段是浅绿溶液缓慢转变为无色.其中第一阶段的反应速率相当快.我组曾研制成功CFF-751G 型连续流动法快速反应装置,本工作采用该装置对上述第一阶段的快速反应进行了动力学研究.