Studying molecular 3D structure and dynamics by high-resolution solid-state NMR: Application to L-tyrosine-ethylester

A unified approach to the study of 3D conformation and molecular dynamics using magic-angle-spinning solid-state NMR is demonstrated on a uniformly 13C-labeled sample of L-tyrosine-ethylester.     

Ultrafast solid-state 2D NMR experiments via orientational encoding

Among the methods proposed in recent years toward the acceleration of multidimensional NMR acquisitions is an "ultrafast" approach, capable of delivering arbitrary 2D correlations within a single scan. This scheme operates by parallelizing the indirect-domain temporal incrementation involved in 2D acquisitions, using as aid an ancillary inhomogeneous frequency broadening acting in combination with a train of frequency-shifted RF pulses. So far, all implementations of this frequency broadening have relied on magnetic field gradients; yet the practical performance of gradient-based approaches is sometimes inadequate-for instance when applied on solid samples subject to magic-angle spinning. In order to deal with these cases, an alternative encoding protocol is here introduced and experimentally exemplified, based on exploiting the intrinsic anisotropy that spin interactions exhibit in the solid state as the ancillary broadening in charge of encoding the interactions to be measured. Principles and preliminary examples of the new orientationally encoded ultrafast 2D NMR principle thus resulting are presented and discussed.     

NMR study of 3,4-dimethoxy benzoic acid

The computed value of the rigid lattice second moment of 3,4-dimethoxy benzoic acid (15.31 gauss²) agrees fairly well with the experimental value of the second moment (17.01 ± 1 gauss²) indicating that the lattice is rigid at 77 K and confirming the proposed model. From the temperature dependence of the second moment, a transition is observed at room temperature which is attributed to the rotation of methoxy groups.     

Protein 3D structure determination by high-resolution solid-state NMR

Developments in NMR technology, sample preparation, pulse sequence methodology and structure calculation protocols have recently allowed one to progress towards structure determination at high-resolution of proteins by solid-state NMR spectroscopy. We here report solid-state NMR protocols based on magic-angle-spinning experiments, combined with modified structure calculation protocols, for structure determination of uniformly ¹³C, ¹⁵N isotopically labeled proteins. We demonstrate the use of these protocols to obtain high-resolution structures for the example of the microcrystalline Crh protein. The CHHC, DARR and PAR solid-state NMR experiments, as well as the calculation protocols using the program ARIA, are presented.     

Efficient identification of different types of carbons in organic solids by 2D solid-state NMR spectroscopy

An efficient method for identifying different types of carbon groups (CH(3), CH(2), CH, and quaternary carbons) in organic solids is proposed by utilizing the combination of a two-dimensional (2D) (13)C-(1)H polarization inversion spin exchange at magic angle (PISEMA) NMR experiment and numerical simulation results of simple isolated (13)C-(1)H dipolar coupling models. Our results reveal that there is a unique line shape of the (13)C-(1)H dipolar splitting pattern and a corresponding characteristic splitting value for each carbon group, based on which different carbon types can be distinguished unambiguously. In particular, by using this method, the discrimination and assignment of overlapped signals from different types of carbons can be achieved easily. The efficacy of this method is demonstrated on typical solid small molecules, polymers, and biomacromolecules.     

Investigation of dipolar-mediated water-protein interactions in microcrystalline Crh by solid-state NMR spectroscopy

Water-protein interactions play a major role in protein folding, structure, and function, and solid-state NMR has recently been shown to be a powerful tool for the site-resolved observation of these interactions in solid proteins. In this article we report investigations on possible water-protein dipolar transfer mechanisms in the microcrystalline deuterated protein Crh by a set of solid-state NMR techniques. Double-quantum (DQ) filtered and edited heteronuclear correlation experiments are used to follow direct dipolar water-protein magnetization transfers. Experimental data reveal no evidence for "solid-like" water molecules, indicating that residence times of solvent molecules are shorter than required for DQ creation, typically a few hundred microseconds. An alternative magnetization pathway, intermolecular cross-relaxation via heteronuclear nuclear Overhauser effects (NOEs), is probed by saturation transfer experiments. The significant additional enhancements observed when irradiating at the water frequency can possibly be attributed to direct heteronuclear water-protein NOEs; however, a contribution from relayed magnetization transfer via chemical exchange or proton-proton dipolar mechanisms cannot be excluded.     

Stereochemical analysis by solid-state NMR: structural predictions in ambuic acid

Relative stereochemistry is predicted for ambuic acid using a novel solid-state NMR approach. This NMR technique entails a comparison of measured shift tensor principal values with computed values for all diastereomers, allowing the selection of a best-fit structure. The proposed method extends previous solution NMR structural data by simultaneously modeling with high statistical probability hydrogen-bonding arrangements and molecular conformation at two positions. A dimeric structure is proposed for ambuic acid based on the initial poor fit of the carboxyl carbon tensors to a monomeric model. The dimer model, consisting of hydrogen bonding between pairs of neighboring carboxyl groups, reduces the root mean square error at the carboxy tensor by a factor of 2.7. Lattice details are thus also described by the proposed approach. The structural characterization method presented is of general applicability and may be especially useful for characterizing difficult to crystallize or hydrogen-poor materials.     

Studies of surfaces through molecular probe adsorption and solid-state NMR

The interaction between the basic probe trimethylphosphine oxide and the Br?nsted acid sites of a silica-alumina has been spectroscopically resolved for the first time using a new solid-state NMR approach that opens the possibilities for the investigation of surfaces.     

Characterization of stereochemistry and molecular conformation using solid-state NMR tensors

A solid-state NMR technique is described for establishing stereochemistry using the natural product terrein as a model compound. This method involves comparison of experimental (13)C tensor principal values with ab initio computed values for all possible computer-generated stereoisomers. In terrein the relative stereochemistry is confirmed by NMR to be 2R*,3S with high statistical probability (>99.5%). The proposed approach also simultaneously verifies the molecular conformation of the two hydroxy groups in terrein established by X-ray data. It is sufficient to use only shift tensor values at carbons 2 and 3, the stereocenters, to characterize both the stereochemistry and molecular conformations. The solid-state NMR method appears to be especially useful for determining relative stereochemistry of compounds or their derivatives that are difficult to crystallize.     

Toward a better description of gallo-phosphate materials in solid-state NMR: 1D and 2D correlation studies

We show that weak 2J(71Ga-O-31P), typically approximately 12 Hz in GaPO4, can be used to efficiently establish heteronuclear 31P-71Ga correlation using a MAS HMQC experiment in gallo-phosphate materials. The experiment demonstrated for cristobalite GaPO4 is then applied to Ga(PO3)3, where it allows the differentiation of the signature of three different Ga sites overlapping in the 1D spectrum.     

A study on the proton transfer in the benzoic acid dimer by C high-resolution solid-state NMR and proton T1 measurements

By a solid-state ¹³C and proton NMR study of the hydrogen bonded dimer of benzoic acid, the rate of proton transfer, the height of the potential barrier for the transfer and the relative population of two different configurations were determined.     

Interdiffusion of PMMA and PVF2, studied by solid-state NMR

A previously published new solid-state nuclear magnetic resonance (NMR) method is applied to the interdiffusion of poly(methacrylate) (PMMA) and poly(vinylidene fluoride) (PVF₂) above their T_g. Via a variation of the cross-polarization technique magnetization is transferred from protons to fluorines. When this magnetization is made to disappear at the fluorine sites, only those protons that are distant from fluorines greater than the distance over which cross-polarization functions will retain their magnetization. In this way we detect the fraction of PMMA near (ca. 20 Å) PVF₂. Starting from sheets of PMMA and PVF₂, which are then heated at 190°C for a variable time, and applying the above technique, we can determine the fractions of PMMA and PVF₂ that have diffused within a distance of a few Å of each other. The intrinsic diffusion coefficients of PMMA and PVF₂ determined from such experiments compare well with literature data. Initial attempts to fit the experimental data suggest that the concentration dependence of the diffusion coefficients cannot be neglected. © 1994 John Wiley & Sons, Inc.     

Investigation of ligand exchange between ethylenediaminetetraacetic acid and its complex with samarium by the NMR method

Theoretical and Experimental Chemistry -     

Effects of intermolecular interaction and molecule-electrode couplings on molecular electronic conductance

By applying nonequilibrium Green's function and first-principle calculation, we investigate the transport behavior of a prototype of a molecular device. The intermolecular interaction and molecule-electrode coupling effects are analyzed in detail, through which we can gain insight into the complexities within a molecular device such as intermolecular charge transport contributions and the imperfect molecule-electrode contact. The existing discrepancy between theory and experiment is discussed.     

Investigation of the intermolecular interaction in the ethylene dimer by a modified CNDO method

The interaction energy of the ethylene dimer has been calculated for two orientations of the molecules in a modified CNDO method with consideration of the superposition error of the basis set. A comparison with the results of perturbationtheory calculations and nonempirical calculations has been made. The satisfactory agreement between these results and a significant improvement over the CNDO/2 method has been noted.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 21, No. 5, pp. 529–535, September–October, 1985.