Density functional theory study of the hydrogen bond interaction between lactones, lactams, and methanol

The structure and relative stability of methanol complexes with various cyclic ketones, lactones, lactams, and N-methyl lactams from three- to seven-membered rings have been investigated using the density functional theory method. The geometries, harmonic frequencies, and energies were calculated at the B3LYP/6-311+G(d,p) level. Three stable structures, cis-a, cis-b, and trans, with respect to the ring oxygen (nitrogen) atom, were found to be local minima of the potential energy surface. For lactones and N-methyl lactams, the most stable structure is trans; it is stabilized, as in cyclic ketones, through the conventional hydrogen bond (HB) interaction between the basic carbonyl oxygen and the acidic methanolic hydrogen and an unconventional HB interaction between the methanolic oxygen and the CH hydrogen, in the alpha position of the carbonyl group. For unsubstituted lactams, the cis-a structure, stabilized through a HB interaction between the NH group and the methanol oxygen in addition to the conventional HB interaction, is the most stable. The topological properties of the electron density ratify the existence of conventional (N,O-H. . .O) and unconventional (C-H. . .O) hydrogen bonding. A good correlation was found between the HB distances and the electron density at the HB critical point. The unsubstituted lactams yield more stable complexes with methanol than N-methyl lactams, lactones, and cyclic ketones. In the most stable complexes, both components behave simultaneously as a HB donor and as a HB acceptor.     

Proton conductive polyimide ionomer membranes: Effect of NH,OH, and COOH groups

A new series of sulfonated polyimide (SPI) copolymers containing NH, OH, or COOH groups were synthesized by the polycondensation of 1,4,5,8‐naphthalnetetracarboxylic dianhydride, 3,3′‐bis(sulfopropoxy)‐4,4′‐diaminobiphenyl, and 3‐(4‐aminophenyl)‐5‐(3‐aminophenyl)‐1H‐1,2,4‐triazole (SPI‐8‐m), 3,5‐bis(4‐aminophenyl)‐1H‐1,2,4‐triazole (SPI‐8‐p), 3,6‐diaminocarbazole (SPI‐9), 3,5‐diamino‐1H‐1,2,4‐triazole (SPI‐10), bis(3‐aminopropyl)‐amine (SPI‐11), 2,6‐diaminopurine (SPI‐12), 2,4‐diamino‐6‐hydroxyprymidine (SPI‐13), or 3,5‐bis(4‐aminophenoxy)benzoic acid (SPI‐14). The obtained SPIs were soluble in polar organic solvents and gave tough and flexible membranes by solution casting. The SPI membranes having NH and COOH groups showed high thermal (decomposition temperature ≈200 °C) and mechanical (maximum stress >22 MPa) stability. Introducing NH groups, especially triazole and carbazole groups, was effective in improving proton conductive properties of SPI membranes at low humidity. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 2846–2854, 2010     

Density functional theory study on the interaction between metalloporphyrins and NH3

The binding behaviors of eight bivalent metalloporphyrins (MPs) (M?Zn, Mg, Cu, Mn, Fe, Co, Ni, and Cd) with NH₃ were investigated by density functional theory. For both MPs and corresponding complexes MPs‐NH₃, good linear correlations are found between the partial charge on metal M and that on atom N (nitrogen of porphyrin) as well as the M? N bond length. Natural population and frontier orbital analysis demonstrate that charge transfer in CoP‐NH₃ is much easier and greater. As a consequence of the charge transfer and the hybridization of molecular energy levels, striking disparities of electronic properties of MPs‐NH₃ are observed. Particularly, a modest linear relationship is obtained between the magnitude of charge transfer and the binding energy. The much greater Fukui functions of CoP, together with its larger binding strength, suggest that CoP is more favorable to the interaction with NH₃, which might be a promising sensing material to response NH₃. © 2013 Wiley Periodicals, Inc.     

Hammett and Brown correlations in the structure and electronic properties of H2Si=SiHAr (Ar = p-C6H4X; X = NH2, OH,Me, H,F, Cl,CHO, COOH,CN, NO2) molecules

Substituent effect on the structure and electronic properties of H₂Si=SiHAr (Ar = p-C₆H₄X; X = NH₂, OH, Me, H, F, Cl, CHO, COOH, CN, NO₂) molecules are studied at the CAM-B3LYP/6-311G(d,p) level of theory. Energy decomposition analysis (EDA) is used as a useful tool for illustrating the interaction between H₂Si and SiHAr fragments in HArSi=SiH₂ molecules. Energetic analysis reveals that the singlet state of the fragments is more stable than triplet state. Also, interactions are stronger in the presence of electron-withdrawing groups (EWGs) in comparison to electron donating groups (EDGs). EDG and EDG effects are investigated on the stability of fragments, frontier orbital energy, distortion, HOMO–LUMO gap, electron-donating (ω⁻) and electron-accepting (ω⁺) powers of the studied molecules. Then, the correlations between these calculated parameters with the Hammett and Brown constants (σ_p and σ_p⁺, respectively) are provided. Also, time-dependent density functional theory method (TD-DFT) is employed for the determination of the strongest absorption band values (λ_max,el) of these molecules. This absorption band is attributed to the HOMO →LUMO transition.     

Competitive interaction between halogen and hydrogen bonds in NH2Br‐HOX (X = F,Cl, and Br) complex

The NH₂Br‐HOX (X = F, Cl, and Br) complexes have been investigated with quantum chemical calculations at the MP2/aug‐cc‐pVTZ level. Five isomers are observed for the Cl and Br complexes, whereas only two isomers are found for the F complex. The geometrical, energetic, and spectroscopic parameters have been analyzed for these complexes. The hydrogen‐bonded complexes are more stable than the halogen‐bonded ones. In most complexes, the associated O? H and O? X bonds are elongated and show a red shift, whereas the distant bonds are contracted and exhibit a blue shift. The complexes have been analyzed with natural bond orbital and atoms in molecules. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Density functional theory study on two D-π-A-type organic dyes containing different anchoring groups for dye-sensitized solar cells

The electronic structure and absorption spectra of two D-π-A-type organic dyes with different anchoring groups have been investigated using density functional theory (DFT) and time-dependent density functional theory (TD-DFT). The effect of anchoring groups on the electronic absorption of the free dyes on (TiO₂)₉ has been studied for the two carbazole dyes (MK1 and MK2). Results from DFT calculations indicate that hydroxamic acid anchoring group in MK2 lead to much stronger intermolecular charge transfer and adsorption energies on (TiO₂)₉ cluster. The effect of four different XC functionals (B3LYP, ωB97xD, M06-2X, and CAM-B3LYP) on the transition energies has been tested in order to explore the valid functional for the studied system. The wavelength values from the ωB97xD/6-31+G** level of theory are in excellent agreement with experimental data so this functional was considered to calculate the electronic absorption of the two studied dyes. The highest occupied molecular orbital (HOMO), the lowest unoccupied molecular orbital (LUMO), and the gap energy (H–L) of the studied dyes are slightly influenced by change of anchoring group. Results reveal that the LUMO energy levels of all studied dyes are higher than the conduction band (CB) of TiO₂ (??4.00 eV). Deprotonation process enhances the efficiency of dye-sensitized solar cells during decreasing adsorption energy of dyes with (TiO₂)₉ cluster.

Graphical abstract

     

Formation and fragmentation of gas-phase ion-molecule complexes of transition-metal ions with organic molecules containing two functional groups

A mass spectrometer fast atom bombardment source has been used to synthesize, in the gas phase, the ion-molecule complexes of transition-metal ions (Ni⁺, CO⁺, Fe⁺, and Mn⁺) with α- or β-unsaturated alkenenitriles, RCH=CHCN (R=H, CH₃, and C₂H₅) and CH₃CH=CHCH₂CN, and 2-methyl glutaronitrile. The metastable ion fragmentations of the complexes are monitored in the first held-free region by B/E linked scans. Surprisingly, an intense HCN loss via an intermediate (C _n H_2n ?2)?M⁺?(HCN) is observed for the complexes of the alkenenitriles. The metal ions significantly affect the fragmentation processes. The coexistence of both end-on and side-on coordination modes is suggested to explain the fragmentations.     

Photoinduced switching of intramolecular hydrogen bond between amide NH and carboxyl oxygen

In this study, we synthesized two novel carboxylic acid and carboxylate compounds, both of which had an amide group linked with an azomethine moiety to introduce photoinduced switching of the intramolecular NH...O hydrogen bond. We suggest that the cis-carboxylate compound forms a stronger intramolecular NH...O hydrogen bond than the cis-carboxylic acid compound.     

Density functional study of electronic,bonding, and vibrational properties of Ca (NH2BH3)2

We present structural, electronic, bonding and vibrational properties of new type hydrogen storage material calcium amidoborane ${\rm Ca}({\rm NH}_{2}{\rm BH}_{3})_{2}$ by first principles density functional theory using plane wave pseudopotential method. The calculated ground state properties are in good agreement with experiments. The computed Bulk modulus of ${\rm Ca}({\rm NH}_{2}{\rm BH}_{3})_{2}$ is found to be 28.7 GPa which is slightly higher than that of ${\rm NH}_{3}{\rm BH}_{3}$ indicating that the material is hard over ${\rm NH}_{3}{\rm BH}_{3}$ . From the band structure calculations, the compound is found to be a direct band gap insulator with a band gap of 3.27 eV at the Γ point. The calculated bandstructure shows that the top of the valance band is from the p states of N and the bottom of the conduction band is from d states of Ca. The Mulliken bond populations, Born effective charges and charge density distributions are used to analyze the bonding nature of the compound. It is found that the N‐H and B‐H bonds are covalent in nature. Further we also compared the phonon density of states and vibrational frequencies of ${\rm Ca}({\rm NH}_{2}{\rm BH}_{3})_{2}$ with ${\rm NH}_{3}{\rm BH}_{3}$ . The study reveals that in both the cases the heavier mass atoms Ca, N, B are involved in the low frequency vibrations whereas the higher frequency vibrations are from H atoms. It is also observed that the vibrational frequencies of B‐H bonds are soft in ${\rm Ca}({\rm NH}_{2}{\rm BH}_{3})_{2}$ when compared to ${\rm NH}_{3}{\rm BH}_{3}$ and thereby concluded that ${\rm Ca}({\rm NH}_{2}{\rm BH}_{3})_{2}$ is a potential hydrogen storage material for fuel cell applications when compared to ${\rm NH}_{3}{\rm BH}_{3}$ . © 2012 Wiley Periodicals, Inc.     

Density functional study of the relationship between energy,hardness, and polarizability of molecules in nonequilibrium situations

We have studied the variation of hardness, polarizability, and electronic and nuclear repulsion energy components of molecules in different nonequilibrium situations obtained by bond distortion and also by placing external point charges on the symmetry axis of the molecules. The above quantities are calculated through Kohn-Sham version of spin-polarized density functional theory with nonlocal exchange correlation functional. Interesting correlations have been found to exist between different energy components, hardness, and polarizability. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 917–926, 1997     

Hydrolysis of cellulose by amorphous carbon bearing SO3H, COOH, and OH groups

The hydrolysis of cellulose into saccharides using a range of solid catalysts is investigated for potential application in the environmentally benign saccharification of cellulose. Crystalline pure cellulose is not hydrolyzed by conventional strong solid Br?nsted acid catalysts such as niobic acid, H-mordenite, Nafion and Amberlyst-15, whereas amorphous carbon bearing SO 3H, COOH, and OH function as an efficient catalyst for the reaction. The apparent activation energy for the hydrolysis of cellulose into glucose using the carbon catalyst is estimated to be 110 kJ mol (-1), smaller than that for sulfuric acid under optimal conditions (170 kJ mol (-1)). The carbon catalyst can be readily separated from the saccharide solution after reaction for reuse in the reaction without loss of activity. The catalytic performance of the carbon catalyst is attributed to the ability of the material to adsorb beta-1,4 glucan, which does not adsorb to other solid acids.     

Relationship between the bond lengths in N-H...N,O-H...O,F-H...F,and Cl-H...Cl hydrogen bridges

The applicability of the equation $ e^{ - ((r_1 - r_0 )/b)^{5/3} } + e^{ - ((r_2 - r_0 )/b)^{5/3} } = 1 $ e^{ - ((r_1 - r_0 )/b)^{5/3} } + e^{ - ((r_2 - r_0 )/b)^{5/3} } = 1 has been studied. The equation defines the relationship between the experimental values of the covalent (r ₁) and hydrogen (r ₂) bond lengths in O-H...O bridges for describing the relation between the experimental interatomic distances in N-H...N bridges and the parameters of X-H...X fragments (X = O, N, F, Cl) calculated by the density functional method (B3LYP/6-31++G(d,p)) for neutral, positive, and negative molecular complexes. Here r ₀ is the mean value of the X-H bond length in free molecules; r _sym is the X...H distance in the symmetrical bridge; and b is the coefficient defined by the equation b = (r _sym − r ₀)/(ln2)^3/5. This equation allows us to adequately describe the relationships between bond lengths in nearly linear hydrogen bridges formed by oxygen, nitrogen, fluorine, and chlorine atoms. It is thus universal and can be used in studies of a wide range of substances.     

Reaction mechanism of HSH and CH3SH with NH2CH2COCH2X (X = F and Cl) molecules

The reaction mechanism of model compounds H₂S and CH₃SH for cysteine proteases with NH₂CH₂COCH₂X (X = F and Cl) molecules has been investigated using DFT methods with B3LYP and B3PW91 hybrid density functionals at 6‐31+G* basis sets. The single point energy has been calculated for the above reactions with B3LYP and B3PW91 functionals using aug‐cc‐PVDZ infinite basis set in both gas and solution phases. The intrinsic reaction coordinates calculations have been performed to confirm that each transition state is linked by the desired reactants and products. The geometries and relative energies for various stationary points have been determined and discussed. The zero point vibrational energy corrections have been made to predict the reliable energy. The negative value of reaction energy indicates that the overall reaction profile is found to be exothermic. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Effect of substituents (NH2, OH, F) on structures and stability of lithofluorosilylenoids

Isomeric structures and energies of three kinds of lithofluorosilylenoids, R₂SiLiF (R = NH₂, OH, F) were studied using theab initio molecular orbital theory. The calculations show that thermal stability of the three-membered ring structures of these three kinds of silylenoids decreases in the order of substituents NH₂ > OH > F because of the conjugation between NH₂, OH or F and Si atom. The interaction of substituents R with Li atom makes R₂SiLiF have a structure with two Li-A-Si-F (A = N, O, F) four-membered rings, which is the most stable of the isomers of each of three kinds of silylenoids and whose stability decreases in the order of substituents F > OH > NH₂. Inductive effect of substituents influences the thermal stability of the linear structure of silylenoids.