Construction of a Laccase Chimerical Gene: Recombinant Protein Characterization and Gene Expression via Yeast Surface Display

The ERY4 laccase gene from Pleurotus eryngii was expressed in Saccharomyces cerevisiae and the recombinant laccase resulted to be not biologically active. This gene was thus modified to obtain chimerical enzymes derived from the substitution of N–, C– and both N- and C-terminal regions with the corresponding regions of Ery3 laccase, another laccase isoform of P. eryngii. The chimerical isoform named 4NC3, derived from the substitution of both N- and C-terminal regions, showed the best performances in terms of enzymatic activities, affinities for different substrates and stability at a broad range of temperatures and pHs. The chimerical 4NC3 laccase isoform was displayed on the cell surface of S. cerevisiae using the N-terminal fusion with either the Pir2 or the Flo1 S. cerevisiae proteins as anchor attachment sequence. Immunofluorescence microscopy and Western blot analyses confirmed the localization of 4NC3 on the yeast cell surface. The enzyme activity on specific laccase substrates revealed that 4NC3 laccase was immobilized in active form on the cell surface. To our knowledge, this is the first example of expression of a chimerical fungal laccase by yeast cell display.     

Bioelectrochemical probing of intracellular redox processes in living yeast cells—application of redox polymer wiring in a microfluidic environment

Conventionally, microbial bioelectrochemical assays have been conducted using immobilized cells on an electrode that is placed in an electrochemical batch cell. In this paper, we describe a developed microfluidic platform with integrated microelectrode arrays for automated bioelectrochemical assays utilizing a new double mediator system to map redox metabolism and screen for genetic modifications in Saccharomyces cerevisiae cells. The function of this new double mediator system based on menadione and osmium redox polymer (PVI-Os) is demonstrated. “Wiring” of S. cerevisiae cells using PVI-Os shows a significant improvement of bioelectrochemical monitoring in a microfluidic environment and functions as an effective immobilization matrix for cells that are not strongly adherent. The function of the developed microfluidic platform is demonstrated using two strains of S. cerevisiae, ENY.WA and its deletion mutant EBY44, which lacks the enzyme phosphoglucose isomerase. The cellular responses to introduced glucose and fructose were recorded for the two S. cerevisiae strains, and the obtained results are compared with previously published work when using an electrochemical batch cell, indicating that microfluidic bioelectrochemical assays employing the menadione–PVI-Os double mediator system provides an effective means to conduct automated microbial assays.

G-rich VEGF aptamer as a potential inhibitor of chitin trafficking signal in emerging opportunistic yeast infection

The alarm is rang for friendly fire; Saccharomyces cerevisiae (S. cerevisiae) newfound as a fungal pathogen with an individual feature. S. cerevisiae has food safety and is not capable of producing infection but, when the host defenses are weakened, there is room for opportunistic S. cerevisiae strains to cause a health issues. Fungal diseases are challenging to treat because, unlike bacteria, the fungal are eukaryotes. Antibiotics only target prokaryotic cells, whereas compounds that kill fungi also harm the mammalian host. Small differences between mammalian and fungal cells regarding genes and proteins sequence and function make finding a drug target more challenging. Recently, Chitin synthase has been considered as a promising target for antifungal drug development as it is absent in mammals. In S. cerevisiae, CHS3, a class IV chitin synthase, produces 90% of the chitin and essential for cell growth. CHS3 from the trans-Golgi network to the plasma membrane requires assembly of the exomer complex (including proteins cargo such as CHS5, CHS6, Bach1, and Arf1). In this work, we performed SELEX (Systematic Evolution of Ligands by EXponential enrichment) as high throughput virtual screening of the RCSB data bank to find an aptamer as potential inhibit of the class IV chitin synthase of S. cerevisiae. Among all the candidates, G-rich VEGF (GVEGF) aptamer (PDB code: 2M53) containing locked sugar parts was observed as potential inhibitor of the assembly of CHS5–CHS6 exomer complex a subsequently block the chitin biosynthesis pathway as an effective anti-fungal. It was suggested from the simulation that an assembly of exomer core should begin CHS5–CHS6, not from CHS5-Bach1. It is notable that secondary structures of CHS6 and Bach1 was observed very similar, but they have only 25% identity at the amino acid sequence that exhibited different features in exomer assembly.     

Site-specific incorporation of a redox-active amino acid into proteins

The redox-active amino acid 3,4-dihydroxy-l-phenylalanine (DHP), which can undergo two-electron oxidation to a quinone, has been incorporated selectively and efficiently into proteins in Escherichia coli in response to a TAG codon. We have demonstrated that DHP can be oxidized electrochemically within the protein. The ability to incorporate a redox-active amino acid site specifically into proteins should facilitate the study of electron transfer in proteins, as well as enable the engineering of redox proteins with novel properties.     

Copper phthalocyanine complex as electrocatalyst for hydrogen evolution reaction

In this work, we have sought economically viable methods for hydrogen evolution reaction (her). For this purpose, we have investigated the voltammetric and in situ spectroelectrochemical behavior of copper phthalocyanine complex and its electrocatalytic activity for her. In spite of the belief that the complexes bearing redox active metal center can catalyze hydrogen evolution reactions, copper phthalocyanine having ring-based redox processes shows excellent electrocatalytic activity.     

Synthesis of an amino-functionalized model of the Fe-only hydrogenase active site

A dinuclear 2Fe2S mimic 6 of the active site of the Fe-only hydrogenases has been synthesized. Complex 6 contains a free amino group which enables linkage to a protein backbone or to a redox active species for the study of electron transfer processes in proteins or in supramolecular systems. The structures of the complex 6 and its Boc-protected precursor 5 could be verified by X-ray crystallography.     

Cloning of a new allelic variant of aSaccharomyces diastaticus glucoamylase gene and its introduction into industrial yeasts

A new allelic variant of theSTA2 gene, designated asSTA2 ^K, coding for a secreted glucoamylase, was cloned. Differences were revealed both in the structural gene and in the promoter region, as compared to otherSTA genes. The most peculiar structural features ofSTA2 ^K are 1. a 1.1-kb natural deletion in its promoter located 189 nucleotides upstream of the translation start codon; and2. an Asn→ Asp single amino acid change within the putative active site of the encoded glucoamylase. Neither the presence of glucose in the medium nor the host cell's mating type constellation affected the expression level ofSTA2 ^K inS. cerevisiae. Self-replicating yeast plasmids containingSTA2 ^K were constructed and used to transform a laboratory yeast strain and various brewing strains. Pilot brewing tests with glucoamylase-secreting transformants of a brewing strain produced superattenuated beers at accelerated fermentation rates.     

Phosphate and arsenate electro-insertion processes into a N,N,N′,N′-tetraoctylphenylenediamine redox liquid

The electro-insertion of ions is a well-known phenomenon, which allows the transfer of anions or cations across phase boundaries to be monitored and driven electro-chemically. Extremely hydrophilic anions, such as phosphate and arsenate, are not usually observed to undergo electro-insertion. It is shown here that at organic redox liquid|water|electrode triple interfaces these anions can be forced electro-chemically to transfer into organic media.The transfer process of phosphate anions from aqueous buffer solutions into organic microdroplets of the redox liquid N,N,N^′,N^′-tetraoctylphenylenediamine (TOPD) is pH and concentration sensitive. It is shown that phosphate is transferred in the form of PO₄HK⁻ in the presence of phosphate buffer. Two distinct potential regions are identified and attributed to (i) interfacial redox processes at the liquid|liquid interface associated with deprotonation and (ii) bulk redox processes associated with anion transfer from the aqueous to the organic phase.The comparison of phosphate and arsenate electro-insertion processes suggests that arsenate is less hydrophilic and transferred into the organic phase preferentially.     

Lithium–sulfur redox: challenges and opportunities

Mechanistic and kinetic insights into the lithium–sulfur (Li–S) redox processes are essential to fundamentally increase the utilization of active material and further realize the practical applications of Li–S batteries. In this article, recent advances of in situ/operando characterizations of Li–S reaction processes and mechanism are presented, revealing the multistep transformations of S species. Interfacial visualization, from the whole interface to nanometer scale, provides specific evidence of sulfur distribution, polysulfide diffusion, and lithium sulfide precipitation. Moreover, the development of efficient electrocatalysts to improve the reaction kinetics are additionally presented and discussed. Although the understanding of the mechanism of the Li–S redox processes has improved in recent times, additional efforts are required for the scale-up production and practical applications of Li–S batteries.     

Theoretical Study on Redox Potential Control of Iron-Sulfur Cluster by Hydrogen Bonds: A Possibility of Redox Potential Programming

The effect of hydrogen bonds around the active site of Anabaena [2Fe-2S] ferredoxin (Fd) on a vertical ionization potential of the reduced state (IP(red)) is examined based on the density functional theory (DFT) calculations. The results indicate that a single hydrogen bond increases the relative stability of the reduced state, and shifts IP(red) to a reductive side by 0.31–0.33 eV, regardless of the attached sulfur atoms. In addition, the IP(red) value can be changed by the number of hydrogen bonds around the active site. The results also suggest that the redox potential of [2Fe-2S] Fd is controlled by the number of hydrogen bonds because IP(red) is considered to be a major factor in the redox potential. Furthermore, there is a possibility that the redox potentials of artificial iron-sulfur clusters can be finely controlled by the number of the hydrogen bonds attached to the sulfur atoms of the cluster.     

Study of redox behavior of Cd(II) and interaction of Cd(II) with proline in the aqueous medium using cyclic voltammetry

The redox behavior of Cd(II) and the interaction of Cd(II) with cyclic amino acid, proline, have been studied in 0.1 M KCl, 0.1 M NaClO₄ and acetate buffer of different pH. The CVs were recorded at glassy carbon electrode within the potential window 200 and ?1500 mV. The reference and counter electrode used were Ag/AgCl and Pt wire, respectively. The cyclic voltammograms show one pair of cathodic and anodic peaks for the Cd(II)/Cd(0) system indicating the involvement of two electron transfer processes. The peak potential shift and charge transfer rate constant (k_f) values strongly support the interaction between metal and ligand. The higher value of peak current ratio and peak potential separation (ΔE) indicate that the systems are quasireversible. The effect of supporting electrolyte and concentration of electro active species on the interaction were also studied.     

Comprehensive profiling of CTP-binding proteins using a biotinylated CTP affinity probe

Recent studies have shown that CTP may act as a ligand to regulate the activity of its target proteins in many biological processes. However, proteome-wide identification of CTP-binding proteins remains challenging. Here, we employed a biotinylated CTP affinity probe coupled with stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics approach to capture, identify and quantify CTP-binding proteins in human cells. By performing two types of competitive SILAC experiments with high vs. low concentrations of CTP probe (100 vs. 10 µmol/L) or with CTP probe in the presence of free CTP, we identified 90 potential CTP-binding proteins which are involved in a variety of biological processes, including protein folding, nucleotide binding and cell-cell adhesion. Together, we developed a chemical proteomic method for uncovering the CTP-binding proteins in human cells, which could be widely applicable for profiling CTP-binding proteins in other biological samples.     

A macromolecular N,N-dichlorosulfonamide as oxidant for residual sulfides

A redox copolymer, a macroporous poly(S/DVB) resin bearing N,N-dichlorosulfonamide groups, was used to remove residual sulfides from aqueous solutions by its oxidation to non-toxic products. The resin contains 8.2 meq active chlorine/g and shows strong oxidizing properties. It was employed in static and flow processes for treatment of sulfide solutions containing 32, 100 or 320 mg S²⁻/dm³. The effects of various parameters on the reaction course have been studied (molar ratio of the reagents, alkalinity of the reaction media, flow rate in column processes). The data showed that the reactive copolymer easily oxidizes sulfides--it was possible to reduce the concentration below 10 μg S²⁻/dm³. During oxidation processes the formation of two end products was confirmed--these were sulfates (in majority) and sulfur which causes the turbidity of the effluents. The reaction conditions to eliminate sulfur formation were sought. To utilize the polymer-bonded active chlorine with good efficiency, it was necessary to maintain a suitable level of alkalinity of the influx. The exhausted copolymer contained unsubstituted sulfonamide groups. It could be regenerated with a slightly acidified sodium chlorate(I) and reused for further processes.     

Assessing Heterologous Expression of Hyoscyamine 6β-Hydroxylase – A Feasibility Study

The protein sequence of the hyoscyamine 6β-hydroxylase gene from Hyoscyamusniger was analysed in silico for its potential of heterologous expression. Therefore different parameters determining the proteins properties and structure in prokaryotic or eukaryotic protein expression systems were taken into account. In silico prediction of co- and post-translational modifications revealed 25 putative glycosylation sites, one of which reported to be a co-factor stabilizing residue in 2-oxoglutarate dependent dioxygenases. Potential protein solubility and degradation (PEST) motifs were also evaluated. Together with the calculated physico-chemical properties the results indicated reasonable solubility but potential instability of the protein in Escherichia coli and Saccharomyces cerevisiae. Further a synthetic h6h-gene was introduced into the prokaryotic or eukaryotic hostsEscherichia coli and Saccharomyces cerevisiae to determine protein expression. The protein could be expressed in both organisms, though stability was confirmed to be an issue.     

The interactome of CCT complex – A computational analysis

The eukaryotic chaperonin, CCT (Chaperonin Containing TCP1 or TriC-TCP-1 Ring Complex) has been subjected to physical and genetic analyses in S. cerevisiae which can be extrapolated to human CCT (hCCT), owing to its structural and functional similarities with yeast CCT (yCCT). Studies on hCCT and its interactome acquire an additional dimension, as it has been implicated in several disease conditions like neurodegeneration and cancer. We attempt to study its stress response role in general, which will be reflected in the aspects of human diseases and yeast physiology, through computational analysis of the interactome. Towards consolidating and analysing the interactome data, we prepared and compared the unique CCT-interacting protein lists for S. cerevisiae and H. sapiens, performed GO term classification and enrichment studies which provide information on the diversity in CCT interactome, in terms of protein classes in the data set. Enrichment with disease-associated proteins and pathways highlight the medical importance of CCT. Different analyses converge, suggesting the significance of WD-repeat proteins, protein kinases and cytoskeletal proteins in the interactome. The prevalence of proteasomal subunits and ribosomal proteins suggest a possible cross-talk between protein-synthesis, folding and degradation machinery. A network of chaperones and chaperonins that function in combination can also be envisaged from the CCT interactome-Hsp70 interactome analysis.     

Gold nanorod-catalyzed luminol chemiluminescence and its selective determination of glutathione in the cell extracts of Saccharomyces cerevisiae

In this study, gold nanorods were firstly found to exhibit a tremendously higher catalytic activity towards luminol chemiluminescence (CL) than spherical gold nanoparticles. More importantly, ultra-trace aminothiols can cause a great CL decrease in the gold nanorod-catalyzed luminol system by the formation of Au-S covalent bonds on the ends of gold nanorods. Aminothiols can occupy the active sites of gold nanorods, and further interrupt the generation of the active oxygen intermediates. Other biomolecules including 19 standard amino acids, alcohols, organic acids and saccharides have no effect on gold nanorod-catalyzed luminol CL signals. Moreover, in order to evaluate the applicability and reliability of the proposed method, it was applied to the determination of glutathione in the cell extracts of Saccharomyces cerevisiae. Good agreements were obtained for the determination of glutathione in the cell extracts of S. cerevisiae between the present approach and a standard Alloxan method. The recoveries of glutathione were found to fall in the range between 96 and 105%. The calibration curve for glutathione was found to be linear from 0.05 to 100 nM, and the detection limit (S/N = 3) was 0.01 nM. The relative standard deviation (RSD) for five repeated measurements of 5.0 nM glutathione was 2.1%.     

Redox reactions: inconsistencies in their description

The paper is aimed at defining reduction, oxidation, and redox reactions based both on the oxidation number and charge changes in reacting species. It is rationalized that the processes of oxidation and reduction, usually occurring simultaneously, can occur also as independent processes. It is explained that in balancing chemical equations of redox reactions the “gain” or “loss” of electrons should be understood as changes in oxidation number. A formal expressions “+n e^?” and “?n e^?” represent in reality a decrease and increase in oxidation number by n units, respectively.     

Styrene epoxidation over a SBA-15-supported Mn(III) Schiff-base complex

2,4-Di-tert-butyl-6-((E)-(propylimino)methyl)phenol as a Schiff-base ligand was immobilized onto an amino-functionalized SBA-15 through the reaction between di-tert-butyl-salicylaldahyde and the tethered amino group. The Mn(III) metal complex of the immobilized Schiff-base ligand was proven to be an active catalyst for the epoxidation of styrene withtert-butyl hydroperoxide as a terminal oxidant. The catalysts behaved as an oxidation catalyst in the epoxidation and could be used many times without structural degradation, leaching of active manganese species and significant activity loss. It has been concluded that the reversible redox cycles of the metal center play a key role during the epoxidation reaction, as well as in the reusability of the catalysts.     

Secretion of Geobacillus Thermoleovorans IT-08 α-L-Arabinofuranosidase (AbfA) in Saccharomyces Cerevisiae by Fusion with HM-1 Signal Peptide

Two different expression vectors were constructed to investigate two signal peptides on secretion of Geobacillus thermoleovorans IT-08 α-L-arabinofuranosidase (AbfA) in Saccharomyces cerevisiae. They were designed to direct the secretion of AbfA by the aid of one of the following signal peptides, the αF signal peptide in the plasmid YEpFLAG1-Af and HM-1 signal peptide in the plasmid pYHM1-Af. Although some successful results have been reported in proteins secretion with αF leader sequence, in this research no α-L-arabinofuranosidase activity could be observed in recombinants S. cerevisiae YEpFLAG1-Af. The HM-1 leader sequence, originated from Hansenula mrakii IFO 0895 killer toxin, showed the capability to AbfA secretion.