Synthesis of a Pair of Derivatives of N-Methylpyrrole Polyamide

A pair of derivatives of tetrameric N-methylpyrrole polyamide were synthesized in order to develop a new method for the study of interaction of the polyamide derivatives with DNA. Indole acetic acid and nicotinic acid were introduced to the polyamide in the synthesized compound, which showed an expected red shift in the UV spectrum. These compounds may function as a potential tool in the detection of the polyamide binding to DNA.     

Efficient quantification of the importance of contacts for the dynamical stability of proteins

Understanding the stability of the native state and the dynamics of a protein is of great importance for all areas of biomolecular design. The efficient estimation of the influence of individual contacts between amino acids in a protein structure is a first step in the reengineering of a particular protein for technological or pharmacological purposes. At the same time, the functional annotation of molecular evolution can be facilitated by such insight. Here, we use a recently suggested, information theoretical measure in biomolecular design - the Kullback-Leibler-divergence - to quantify and therefore rank residue-residue contacts within proteins according to their overall contribution to the molecular mechanics. We implement this protocol on the basis of a reduced molecular model, which allows us to use a well-known lemma of linear algebra to speed up the computation. The increase in computational performance is around 10(1)- to 10(4)-fold. We applied the method to two proteins to illustrate the protocol and its results. We found that our method can reliably identify key residues in the molecular mechanics and the protein fold in comparison to well-known properties in the serine protease inhibitor. We found significant correlations to experimental results, e.g., dissociation constants and Φ values.     

Characterization of the barrier properties of composites of HDPE and purified cellulose fibers

The present work presents and discusses the interrelation between composition, morphology, thermal history, mechanical and barrier properties to oxygen and limonene of composites of HDPE/MA-PE/cellulose fibers of significant interest in, among others, food packaging applications. From the overall results, it was observed that increasing the loading of purified alpha-cellulose fibers in the polyethylene matrix beyond 10 wt.% led to a decrease in the permeability coefficient of d-limonene, effect which was found to be primarily related to a decrease in the overall solubility of this strongly plasticizing aroma component. On the other hand, the oxygen permeability was found to decrease to a significant extend with increasing fiber content beyond 5 wt.%, but this effect was more strongly ascribed to a significant decrease in the diffusion coefficient. Therefore, the fibers are thought to generate a more tortuous path for the non-interacting gas molecules to travel across the composites thickness, even when tested at high relative humidity conditions. Optimum fiber loading levels in terms of overall property balance were found to be around 20 wt.%.     

Bioinformatic analysis of molecular network of glucosinolate biosynthesis

Glucosinolates constitute a major group of secondary metabolites in Arabidopsis, which play an important role in plant interaction with pathogens and insects. Advances in glucosinolate research have defined the biosynthetic pathways. However, cross-talk and interaction between glucosinolate pathway and other molecular pathways are largely unknown. Here three bioinformatics tools were used to explore novel components and pathway connections in glucosinolate network. Although none of the software tools were prefect to predict glucosinolate genes, combination of results generated by all the tools led to successful prediction of all known glucosinolate genes. This approach was used to predict new genes in glucosinolate network. A total of 330 genes were found with high potential to relate to glucosinolate biosynthesis. Among them 64 genes were selected to construct glucosinolate network because their individual connection to at least one known glucosinolate gene was predicted by all the software tools. Microarray data of candidate gene mutants were used for validation of the results. The mutants of nine genes predicted by glucosinolate seed genes all exhibited changes in the expression of glucosinolate genes. Four of the genes have been well-known to functionally interact with glucosinolate biosynthesis. These results indicate that the approach we took provides a powerful way to reveal new players in glucosinolate networks. Creation of an in silico network of glucosinolate biosynthesis will allow the generation of many testable hypotheses and ultimately enable predictive biology.     

紫外拉曼光谱研究焙烧气氛对氧化锆相变的影响

 以紫外拉曼光谱技术研究了在不同焙烧气氛中氧化锆样品的表面晶相结构及其转变过程．结果表明，在有氧气氛中焙烧的氧化锆样品易转变为单斜相，而在惰性气氛中焙烧可以有效地稳定样品体相和表面的四方相结构．在缺氧气氛中焙烧的样品暴露于空气中后，表面极易转变为单斜相，而其体相仍为四方相结构，这表明四方相氧化锆在样品表面是极不稳定的．     

Assessment of genetic purity of bulked-seed of rice CMS lines using capillary electrophoresis

Genetically pure cytoplasmic male sterile line (A-line) is essential to generate pure hybrid seeds in order to harness the yield heterosis in rice. Conventionally, seed purity testing is carried by grow-out test, which has many limitations. Seed purity assessments based on molecular markers reduce the time required for analysis significantly. However, it is very tedious as at least 200–400 seeds/seedlings are needed to be analyzed individually. An assay based on bulked-seed and molecular markers will be an ideal system. Keeping these points in view, in the present study, a co-dominant mitochondrial marker was used to test the purity of bulked parental line (A-line) seed utilizing CE system in a genetic analyzer. The results indicate that this method is very simple, accurate, and can be used to test purity of large number of samples rapidly in a cost-effective way compared to grow-out test and conventional molecular marker analysis.     

The effect of structural characteristics of porous hydrophobized electrodes on selectivity of electrolysis of organic substances

A theoretical study of the effect of the electrode structure on the electrosynthesis in hydrophobized electrodes (HPE) for a case of further electrochemical conversion of the target product is performed by the example of nitromethane electroreduction to methyl hydroxylamine followed by its reduction to methylamine. The effect of the electrode structure on the selectivity of electrosynthesis in HPE was shown to be related to the effective diffusivity and conductivity.     

Review of Mesoscopic Modeling of Liquids in Materials Science

Mesoscopic theories can be used in the field of materials science to derive local average properties of relevance to the engineer such as flux, pressure, average density or composition. In the following density functional theory will be described and applied to different systems of interest and in particular, to materials formed from complex liquids as characterized by atomic structure and the type of interaction between the individual particles. The calculation of the solid to liquid transition will be explained in detail as a prototype for other order disorder transitions. The theory of polymers in solution will be revisited and used to calculate phase separation in mixtures. An extension of the theory to include the orientation of rodlike, long molecules will be applied to liquid crystals. In the presence of an interface, the system properties depend strongly on position in space and can be predicted from parameters obtained in the bulk in a square gradient approximation for sufficiently smooth and small deviations from the uniform distribution. A phase transition is often used to prepare heterogeneous materials by nucleation and growth. It will be shown how the equilibrium theory can be extended to study the dynamics of nonequilibrium phenomena.     

Estimation of Sorption Parameters of Solids by Means of Derivatograph Q

Derivatograph Q-1500D was completed with a partial vapour pressure control unit in order to study the sorption phenomena. The proposed arrangement allows to perform time consuming experiments at ambient atmospheric pressure in the temperature range 10–200°C.This revised version was published online in November 2005 with corrections to the Cover Date.     

Investigation of the influence of pressure on the combustion of Alpagut lignite

This research presents the combustion behavior of lignite under different reaction pressures. Lignite from Alpagut, Çorum of Turkey was combusted in its run off mine (ROM) condition under three different pressure levels of 172, 345, 517 kPa (25, 50, 75 psi). Experiments were done in a fully controlled temperature regime in an isolated combustion tube that operated in coordination with a continuous gas analyzer. Combustion behavior of lignite under different pressures was characterized by effluent gas analysis method. The changes in the amounts of consumed oxygen, evolved carbon oxides as well as variations in the temperature were assessed. The combustion efficiency and effectiveness of lignite was evaluated in terms of thermal features, from the viewpoint of reaction kinetics and by the computation of instantaneous fuel consumption at critical points. It was seen that combustion of lignite tended to turn from a steady profile to a considerably rapid one with increase in pressure, proving to be highly sensitive to the applied pressure level. Also, different levels of pressure resulted in distinctive combustion behavior not only from the view of thermal characteristics, but also in terms of reaction kinetics.     

Kinetics of Thermal Decomposition of Plumbo-jarosite

An investigation was carried out on the kinetics of thermal decomposition of plumbo-jarosite. The kinetic models of dissociation of the compounds in the ore were identified. The results of the kinetic studies and the mechanism of the process are discussed. The thermal decomposition of plumbo-jarosite occurs in three stages: the first up to 763, the second up to 1023 and the third up to 1223 K, the corresponding activation energy values being 62.2, 60.3 and 98.0 kJ mol^–1 , respectively. This revised version was published online in July 2006 with corrections to the Cover Date.     

聚丙烯酰胺胶状杂质的形成因为

在聚丙烯酰胺(PAM)配制现场发现过滤器滤袋内存在大量黑色和黄色且有刺鼻腐臭气味的胶状条形物;这类杂质造成过滤装置严重堵塞和设备腐蚀.鉴于此,从细菌和无机离子含量两方面着手分析了聚丙烯酰胺胶状条形杂质的形成因为.结果表明:由于细菌和金属离子Fe3+含量的增加,PAM的侧酰胺基降解成羧基;而含大量金属离子的PAM溶液经缠...     

The Applicability of Essential Oils in Different Stages of Production of Animal-Based Foods

Essential oils (EOs) have been used for centuries, and interest in these compounds has been revived in recent years. Due to their unique chemical composition as well as antimicrobial, immunostimulatory, anti-inflammatory and antioxidant properties, EOs are used in pharmacology, cosmetology and, increasingly, in animal breeding and rearing, and processing of animal raw materials. Essential oils have become a natural alternative to preservatives, taste enhancers and, most importantly, antibiotics, because the European Union banned the use of antibiotics in metaphylaxis in animal husbandry in 2006. In the animal production chain, EOs are used mainly as feed additives to improve feed palatability and increase feed intake, improve animal resistance and health status, and to prevent and treat diseases. Recent research indicates that EOs can also be applied to sanitize poultry houses, and they can be used as biopesticides in organic farming. Essential oils effectively preserve meat and milk and, consequently, improve the safety, hygiene and quality of animal-based foods. Novel technologies such as encapsulation may increase the bioavailability of EOs and their application in the production of food and feed additives.     

Dependence of the Rate of Electrodeposition of Metals at Mono- and Multielectrodes on Voltage in the Case of an Exaltation Mechanism of Mass Transport

Dependences of the rate of copper deposition on mono- and multielectrodes out of dilute solutions of acetic acid at voltages of 20–250 V are compared. It is established that the same rate of deposition in the case of a multielectrode (25 electrodes with a diameter of 0.1 mm) takes place at a voltage that is lower by 2.7 times than that in the case of a monoelectrode with a diameter of 0.5 mm and the same area. The same results are obtained during electrodeposition of cadmium and thallium. In order to explain this effect, a two-layered model of potential distribution is suggested. In accordance with this model, the resistance of electrolyte in the vicinity of a multielectrode is equal to the sum of the resistance of the layer nearest to the electrode (where it is determined by the sum of conductances to each microelectrode) and the external layer, where the potential distribution is close to hemispherical. It is shown that calculations in accordance with this model allow one to give an estimate of the effect's scale that agrees with experiment and to predict its possible limits following an increase in the number of electrodes that make up a multielectrode.     

荧光关联光谱在高分子单链研究中的应用

荧光关联光谱(fluorescence correlation spectroscopy,FCS)是一项用于研究体系动力学性质的统计光谱技术,随着它被引入材料与化学研究领域,近年来取得了大量全新的研究成果.该技术在高分子科学研究中也逐渐发挥出越来越大的作用,特别是在聚合物结构和动力学方面,这表明它在高分子领域的巨大潜力.本文将从FCS的基本原理、实验技巧以及在一些具有挑战性体系中的应用等方面展开,着重介绍它在高分子溶液,如聚电解质溶液、高分子混致不溶现象,以及不同的表界面体系中取得的新成果,展示FCS区别于其他传统技术的特点和优势.     

Industrial Application of the Semiconductor Properties of Dyes

Effects of industrial interest have been detected in investigations on the dark conductivity and photoconductivity of dyes. For example, it was found that organic dyes can be used in the same way as inorganic photoconductors in vidicon television pickup tubes for the reproduction of images. Among other things, pointers were obtained to the formation of rectifying and photoelectrically sensitive pn junctions, to relatively high thermoelectromotive forces of doped and polymeric dyes, to the possibility of use in reprography, and to a high catalytic activity connected with the conductivity, which is already being utilized in fuel cells.     

Quantum-chemical investigation of the effect of solvent polarity on the direction of sulfonation of pyrrole

The relative stability of the isomeric σ-complexes formed in the sulfonation of pyrrole at the α-or β-position (the α-isomer is energetically more favorable) does not agree with the experimentally established positional selectivity of substitution (the formation of β-pyrrolesulfonic acid). However, quantum-chemical calculations of the energy parameters for the reaction of pyrrole and SO₃ with due regard to the solvation effect in the model solvent methylene chloride (ε = 8.93) lead to the conclusion that the calculated activation energy of the rearrangement to the more favorable β-pyrrolesulfonic acid for the less favorable β-isomer of the σ-complex is lower than on the path to the formation of the α-pyrrolesulfonic acid. It was shown that the significant increase in the polarity of the model medium in the transition to DMSO (ε = 46.7) does not lead to substantial change in the energy parameters of the reaction. The explanation for the positional selectivity during the sulfonation of pyrrole using Py·SO₃, according to previous data, involves the participation of the pyridine in the transformation of the σ-complexes into the products. The calculations were made by the B3LYP/6-31G(d) and HF/3-21+G methods using the model of overlapping spheres to take account of solvation. Dedicated to E. J. Lukevics on his 70th birthday __________ Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 1, pp. 34–40, January, 2007.     

Influence of Apoptin on Up-regulation of the Expression of Bad and Bax

The chicken anemia virus protein, apoptin, which manifests selectivity and specificity to tumor cells, induces a p53-independent and Bcl-2-insensitive type of apoptosis in various human tumor cells. In this study, the apoptin gene was cloned from the total DNA of chicken anemia virus, and the recombinant vector was constructed. We used oligonucleotide microarray to study the changes of four genes, including Bcl-2, Bcl-xL, Bad and Bax. The post-transfection with the recombinant was also studied. The pro-apoptotic genes(Bad and Bax) and anti-apoptosis genes(Bcl-2 and Bcl-xL) were up-regulated in contrast to the controls. According to the published data, either Bcl-2 or Bcl-xL can form non-functional heterodimers by Bad and Bax binding together, resulting in blocking partly the release of cytochrome c from mitochondria. However, apoptosis could be inhibited by neither the endogenous Bcl-xL nor Bcl-2 over-expression. The experiments show that the apoptin-induced apoptotic pathway is related to the up-regulation of Bad and Bax. Bad was up-regulated by apoptin; then this up-regulated product of Bad was in favor of displacing Bax from binding to Bcl-xL or Bcl-2. Consequently. Bax exerted a pro-apoptotic dysfunction to mitochondria, thereby inducing the release of cytochrome c. Finally, apoptin induced the apoptosis of HHCC cells. These results indicate that the oligonucleotide microarray can reveal the genes related to the apoptosis induced by apoptin in HHCC cells.     

Enthalpy of dilution of tetra-n-butylammonium bromide in mixtures of water and N-methylacetamide

The enthalpy of dilution of tetra-n-butylammonium bromide in mixtures of water and N-methylacetamide has been measured from approximately 0.1 to 1.0m at 35°C. The mole fraction of water in the solvent varied from 0.250 to 0.969. The results are strikingly nonlinear in the mole fraction of water. As the mole fraction of water varies from 0 to 0.7, there is only a small change in the enthalpy of dilution. At higher mole fractions of water, the excess enthalpy rises sharply to the unusually high values found in water. This indicates that the unusually high values of excess enthalpy associated with hydrophobic bonding in water are destroyed by relatively small amounts of N-methylacetamide.Taken in part from the Ph.D. thesis of J. S. Falcone, Jr., University of Delaware, Newark, Delaware, June 1972.     

A molecular description of the evolution of resistance

BACKGROUND: In vitro evolution has been used to obtain nucleic acid molecules with interesting functional properties. The evolution process usually is carried out in a stepwise manner, involving successive rounds of selection, amplification and mutation. Recently, a continuous in vitro evolution system was devised for RNAs that catalyze the ligation of oligonucleotide substrates, allowing the evolution of catalytic function to be studied in real time. RESULTS: Continuous in vitro evolution of an RNA ligase ribozyme was carried out in the presence of a DNA enzyme that was capable of cleaving, and thereby inactivating, the ribozyme. The DNA concentration was increased steadily over 33.5 hours of evolution, reaching a final concentration that would have been sufficient to inactivate the starting population in one second. The evolved population of ribozymes developed resistance to the DNA enzyme, reducing their vulnerability to cleavage by 2000-fold but retaining their own catalytic function. Based on sequencing and kinetic analysis of the ribozymes, two mechanisms are proposed for this resistance. One involves three nucleotide substitutions, together with two compensatory mutations, that alter the site at which the DNA enzyme binds the ribozyme. The other involves enhancement of the ribozyme's ability to bind its own substrate in a way that protects it from cleavage by the DNA enzyme. CONCLUSIONS: The ability to direct the evolution of an enzyme's biochemical properties in response to the behavior of another macromolecule provides insight into the evolution of resistance and may be useful in developing enzymes with novel or enhanced function.