Thermochemistry of aqueous solutions of alkylated nucleic acid bases. VIII. Enthalpies of hydration of 6-alkyluracils

Enthalpies of solution in water H _sol ^o and enthalpies of sublimation H _sub ^o were determined for a number of crystalline derivatives of uracil: 1,6-dimethyluracil (m ₂ ^1,6 Ura), 1,3,6-trimethyluracil (m ₃ ^1,3,6 Ura), 6-ethyl-1,3-dimethyluracil (e⁶m ₂ ^1,3 Ura), 6-propyl-1,3-dimethyluracil (pr⁶m ₂ ^1,3 Ura) and 6-butyl-1,3-dimethyluracil (but⁶m ₂ ^1,3 Ura). Standard enthalpies of hydration H _hydr ^o and standard enthalpies of interaction H _int ^o of the solutes with their hydration shells were calculated. The data obtained show that dependence of H _int ^o on the number of-CH₂- groups of n-alkyl chain added upon substitution of diketopyrimidine ring is nonlinear. This finding is discussed in connection with results of X-ray diffraction structure determinations for the crystalline compounds.     

Thermochemistry of aqueous solutions of alkylated nucleic acid bases. IX. Enthalpies of hydration of 9-methyl-8-alkyladenines and 6,9-dimethyl-8-alkyladenines

Enthalpies of solution in water, H _sol ^o , and enthalpies of sublimation, H _sub ^o , were determined experimentally for a number of crystalline derivatives of adenine: 6,8,9-trimethyladenine; 6,9-dimethyl-8-ethyladenine; 6,9-dimethyl-8-propyladenine; 6,9-dimethyl-8-butyladenine; 8,9-dimethyl-adenine and 9-methyl-8-ethyladenine. Standard enthalpies of hydration, H _hydr ^o , derived from these data were calculated. The latter were discussed together with the values for variously alkylated adenines, determined previously. The data obtained show that the dependence of enthalpy of hydration on the number of methylene groups added upon substitution with 8-n-alkyl groups of 9-methyladenine and 6,9-dimethyladenine is nonlinear.     

Thermochemistry of aqueous solutions of nucleic acid bases and their alkylated derivatives

Enthalpy of solution, ΔH _sol ^o , enthalpy of sublimation, ΔH _subl ^o , apparent partial molar volume and heat capacities,V ₂ ^o andC _p,2 ^o were determined for aqueous solutions of thirty alkylated derivatives of uracyl and adenine, eight derivatives of cytosine and guanine. Calculated accessible surface areas and molar volumes are presented, too. The values of enthalpy of solution, enthalpy of sublimation can be useful in the studies on the nature of interaction between these compounds and water molecules. Apparent partial molar volume and heat capacity give a new aspect on hydrophob properties of the examined nucleic acid base derivatives.     

Thermochemistry of Aqueous Solutions of Alkylated Nucleic Acid Bases. X. Enthalpies of Hydration of Cytosine and some Methylated, Hydroxy and Methoxy Derivatives of Cytosine

Enthalpies of solution in water, vapor pressures, and enthalpies of sublimation were determined for cytosine and a number of crystalline derivatives of cytosine: 1-methylcytosine, 1-methyl-N ⁴-hydroxycytosine, 1,5-methyl-N ⁴-methoxycytosine, 1,N ⁴,N ⁴-trimethylcytosine, 1,5,N ⁴-trimethylcytosine, 1,5-dimethyl-N ⁴-methoxycytosine, and l,N ⁴-dimethyl-5-ethylcytosine. Enthalpies of hydration were calculated. The latter were analyzed on the basis of the group additivity method. The relation between enthalpy of hydration and polarity of compounds is discussed.     

Thermochemistry of aromatic ketones. Experimental enthalpies of formation and structural effects

The standard enthalpies of formation Δ_fH^o (liq. or cr.) at the temperature T = 298.15 K were measured using combustion calorimetry for benzophenone (A), 1-indanone (B), -tetralone (C), 9-fluorenone (D), anthrone (E) and dibenzosuberone (F). The standard enthalpies of vaporization Δ_vH^o or sublimation Δ_sH^o of A-F and 5,7-dihydro-6H-dibenzo[a,c]cyclohepten-6-one (G) were obtained from the temperature function of the vapor pressure measured in a flow system. Enthalpies of fusion Δ_mH of solid compounds were measured by DSC. From the enthalpies of formation of the gaseous compounds of A-G the values of their strain enthalpies were derived and structural effects discussed.

     

Thermochemistry of Alcohols: Experimental Standard Molar Enthalpies of Formation and Strain of Some Alkyl and Phenyl Congested Alcohols

The standard molar enthalpies of formation _f H _m ^° (cr) at the temperature T = 298.15 K were determined using combustion calorimetry for di-tert-butyl-methanol (A), di-tert-butyl-iso-propyl-methanol (B), and di-phenyl-methyl-methanol (C). The standard molar enthalpies of sublimation _cr ⁸ H _m ^° of these compounds and of di-phenyl-methanol (D) were obtained from the temperature variation of the vapor pressure measured in a flow system. Molar enthalpies of fusion _cr ¹ H _m ^° of the compounds A–D and of tri-phenyl-methanol (E) were measured by differential scanning calorimeter (DSC). From these data and data available from the literature, the following standard molar enthalpies of formation in gaseous phase _f H _m ^° (g) for A, (–397.0 ± 1.2); B, (–418.1 ± 2.3); C, (–34.2 ± 1.3); and D, (0.9 ± 2.1) kJ · mol^–1 were derived, which correspond to strain enthalpies (H _S) of 46.1, 114.7, 8.1, and 5.0 kJ · mol^–1, respectively.     

Enthalpies of solvation of alkylated uracils in water,nonaqueous and mixed solvents

The enthalpies of solution of uracil and its alkylated derivatives in water, methanol, N,N-dimethylformamide (DMF) and water+DMF mixtures were measured at 25°C. The enthalpies of solvation were determined. The enthalpies of cavity formation, corresponding to the enthalpies of solvent-solvent interactions were calculated and the enthalpies of solute-solvent interactions were obtained. The presence of the alkyl groups was found to have different effects on the enthalpy of interaction depending on the position and size of the substitution. The effect of alkylation at the nonpolar side of the uracil ring was found to arise mostly from the enhancement of the van der Waals interactions. The alkyl substitutions at the polar side resulted also in the removal of the solvent molecules interacting specifically with the polar groups of uracil. The enthalpy of those specific interactions was determined and found to be stronger in methanol and DMF than in water. Enthalpies of solvation in the binary water+DMF solvent were found to depend in a nonlinear way on the solvent composition. The nonlinearities in the water-rich region were found to arise from the decay of the hydrophobic hydration of the solutes with the increasing DMF content. The substitution of two methyl groups caused the uracil molecule to bahave as a predominantly hydrophobic solute. The nonlinearities in the DMF-rich region were found only for those solutes which can form hydrogen bonds with DMF.     

Evaluation of thermodynamic functions relative to cavity formation in aqueous solutions

The results of calculation of free Gibbs energy and enthalpy of cavity formation were described using the Scaled Particle and Sinanoglu's theories.

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Zusammenfassung Mittels der zitierten Theorien wurden die Resultate der Berechnung der freien Gibbs'schen Energien und Enthalpien für die Hohlraumbildung beschrieben.

     

Thermochemistry of Heteroatomic Compounds X. The thermochemistry of solution and solvation of substituted alkylphosphonic derivatives

The enthalpies of vaporization of different classes of phosphorylated alcohols and amines were determined from their enthalpies of solution in hexane and carbon tetrachloride. The enthalpies of specific (hydrogen-bond) interaction with the solvents (chloroform and pyridine) of derivatives containing X-H groups (X=O or N) in the α-position to the P=O group were determined. The results were explained in terms of the spatial structure of such compounds. This revised version was published online in August 2006 with corrections to the Cover Date.     

Thermodynamics of ionization of aqueous sulfamic acid,an almost-strong electrolyte

We have measured enthalpies of dilution of aqueous sulfamic acid solutions at 25°C and used results of these measurements to calculate the standard enthalpy of ionization of sulfamic acid. The average H _1on ⁰ obtained in this work was 735±200 J-mol^–1. We have also measured enthalpies of solution of crystalline sulfamic acid in water at 25°C. The results from both measurements are combined with some earlier results from Wu and Hepler to obtain a best value for the standard enthalpy of solution, H _S ⁰ =19.2±0.2 kJ-mol^–1.     

The aromatic amino acid behaviour in aqueous amide solutions

The enthalpies of solution of L-phenylalanine in the mixtures of water with the protein denaturant urea have been measured in the temperature range of 288.15–318.15 K. Using the results of the present research and literature data of free energies, the standard thermodynamic functions of the solute transfer from water to aqueous urea solutions have been estimated in a wide temperature range. The enthalpic, heat capacity, entropic and free energy parameters of the solute-urea pair and triplet interactions have been computed. The amino acid — amide pair interaction was found to be attractive in the temperature range studied due to the favourable enthalpic term. The triplet interaction being slightly repulsive reveals the enthalpic origin also. The examination of the Savage and Wood additivity-of-groups approach does indicate the inapplicability of this scheme to enthalpies and entropies of interaction. It has been found for the first time that the heat capacity of interaction changes its sign at 303 K, i.e. the temperature dependence of enthalpic and entropic parameters passes through the pronounced extrema near the temperature of the minimum of the heat capacity of pure water.     

Enthalpies of solvation in cyclohexane and in water for homologous aliphatic ketones and esters

The standard enthalpies of solution at infinite dilution were determined for homologous aliphatic ketones and esters in water and in cyclohexane, using a rotating Calvet calorimeter, and solution concentrations about 5×10^–4 mole fraction. Vaporization enthalpies, obtained for each compound with an effusion calorimetric cell, were added to calculate the solvation enthalpies. Their dependence on the number of carbon atoms in the chain is discussed in terms of the Friedman and Krishnan treatment. The effect of polarization of the functional groups is evaluated, and separation from the influence of chain length and the hydrophobic interactions of the methylenes is attempted. For the aqueous solutions, the rearrangement in the structure of the solvent around solute molecules is also considered in relation to deviations from linearity. Comparisons are made with solvation enthalpies obtained for ketones and esters with branched or cyclic substitutes.     

Thermochemistry of heteroatomic compounds 22. Enthalpies of combustion and formation of alkyl(aryl)arsines and arsenites in the condensed and gaseous phases

The enthalpies of combustion (ΔH _comb) of five primary, secondary, and tertiary alkyl(aryl)arsines in the condensed state were calculated using the equation ΔH _comb = −385.8–110.3N, where N is the number of bond-forming electrons. The dependence presented is used for the calculation of the enthalpies of combustion of full esters and amidoesters of arsinous acid of noncyclic and cyclic structures. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 1042–1043, May, 2007.     

Thermodynamics of bolaform electrolytes. V. Enthalpies and heat capacities in aqueous urea solutions

The partial molal heats of solution at infinite dilution of 1,4-bis(triethylammonium)butane dibromide and 1,10-bis(triethylammonium)decane dibromide in aqueous urea (up to 8m urea) have been determined calorimetrically in the temperature range 18–33°C. These data have been used to derive the partial molal heat capacities at infinite dilution, the enthalpies of transfer, and heat capacities of transfer at infinite dilution from water to urea-water solutions. The results show that the enthalpies of transfer are negative and decrease with increasing urea concentrations. The heat capacities of transfer are negative at low urea concentrations and increase in magnitude at higher urea concentrations. In the case of the smaller cation the partial molal heat capacity in 8m aqueous urea solution is greater than in pure water. The results are discussed in terms of structural changes in the solvents on dissolution.     

Enthalpies of mixing of aqueous solutions of the amino acids glycine,l-alanine and l-serine

The enthalpies of mixing of aqueous solutions of the three amino acids glycine, L-alanine and L-serine have been determined at 25°C. These data have been analyzed, using the McMillan-Mayer theory, to obtain the various enthalpic pair interaction coefficients, h_xy. The results are discussed in terms of the likely molecular interactions. The application of the Savage-Wood additivity principle to these solute systems is also considered.     

Investigation of the tautomeric equilibrium of nucleic acid bases in aqueous solution

Relative constants of acidity and basicity of nucleic acid bases (NABs) and their tautomeric forms are calculated. The general characteristic of the effect of an aqueous solvent on the tautomeric equilibrium of NABs is formulated. It is shown that during the tautomeric transformation of NABs their acid-base properties change to the opposite ones. One of possible causes of the formation of complementary pairs with rare tautomeric forms of NABs is considered.     

Structural studies of cyclic ureas: 2. Enthalpy of formation of parabanic acid

Thermophysical and thermochemical studies have been carried out for crystalline parabanic acid. The thermophysical study was made by differential scanning calorimetry, DSC, over the temperature interval between T = (263 and 473) K. Two phase transitions were found: at T = (392.3 ± 1.6) K with the enthalpy of transition of (2.1 ± 0.4) kJ · mol⁻¹ and at T = (509.8 ± 1.5) K, when the compound was scanned to its fusion temperature. The standard (p = 0.1 MPa) molar enthalpy of formation, at T = 298.15 K, for crystalline parabanic acid was determined using static-bomb combustion calorimetry as −(590.2 ± 1.0) kJ · mol⁻¹. The standard molar enthalpy of sublimation, at T = 298.15 K, was derived from the variation of their vapour pressures, measured by the Knudsen-effusion method, with the temperature. These two thermochemical parameters yielded the standard molar enthalpy of formation in the gaseous phase, at T = 298.15 K, as −(470.8 ± 1.2) kJ · mol⁻¹.     

Predictions of solvation and vaporization enthalpies. 1.n-alkane +n-alkane solutions

A simple method for the calculation of the enthalpy of solvation is presented and demonstrated for 35 n-alkane + n-alkane solutions at 25°C. There is a good agreement between the predicted and experimental values. The calculation was based on the separation of the solvation enthalpy into the cavity formation and solute-solvent interaction contributions. The former term was determined from the activation enthalpy of the solvent viscous flow and solute molar volume while the latter on the basis of the dispersion energy using van der Waals diameters for n-propyl group. The procedure was also successful in prediction of the vaporization enthalpy of C₅–C₁₇ n-alkanes.     

DFT plus PCM calculation for pairing specificity of Watson–Crick‐type bases in aqueous solutions

This study is aimed at explaining the preference for AT and CG pairings and the possible insertion of other tautomeric DNA base pairs such as G_enolT, that respect energetic and steric requirements including at least two hydrogen bonds and 11 ± 0.5Å distance between the 9‐CH₃ of purine and 5‐CH₃ of pyrimidine. The calculated free energy of formation ΔΔG at the DFT B3LYP/6‐31G*‐PCM/BEM level pointed out the CG and AT pairs as the most favored, followed closely by G_enolT, in good agreement with Michaelis–Menten first order kinetics (CG ≈ AT > G_enolT). Unusual DNA base pairs complexes such as AG (BEM) and CT (PCM) resulted to be stable, but it is very difficult to assume that they are likely to be included in the double strand DNA. The calculated enthalpy and dipole moments of isolated DNA bases agree well with experiment. The free energy of hydration, ΔG_hyd, was found to depend on the electrostatic term, while cavitation‐dispersion components are almost constant. The stability of DNA complexes in water resulted from PCM calculations is markedly influenced by the free energy of hydration. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Enthalpies of Solution of Organic Compounds in Water/Octan-1-ol Mixtures. II. Bifunctional Saturated Compounds

Limiting enthalpies of solution of several bifunctional compounds (1,2-dimethoxyethane, 2-methoxyethanamine, 2-methoxyethanol, 2-aminoethanol, 1,4-dioxane, morpholine, 4-methylmorpholine, 1-methylpiperazine) in water/octan-1-ol mixtures, with water content ranging from zero to saturation, have been determined at 25°C. The observed phenomenology has been interpreted according to a model of microphase transition involving the solvent medium. In the low water content range, water acts as prevailingly monodispersed, whereas above 0.1 mole fraction water the formation of pseudomicellar water aggregates can be inferred and a simple model of phase distribution can be applied to describe the observed trends.