人工神经网络用于对位取代苯酚定量构效关系的研究

本文利用误差反向传播(BP)的人工神经网络(ANN)模型研究了对位取代苯酚衍生物的生物活性与其结构及物理化学性质参数之间的定量构效关系。优化了ANN模型的参数设计,提出了动态调节网络学习速率的经验规则以改善网络的性能。采用f(x)=1/(1+e~(-x))作为网络节点的输入输出转换函数的三层神经网络具有较佳性能,当取隐含节点数为10时,该网络预测26个对位取代苯酚衍生物生物活性的均方误差(mse)为0.036,优于常规构效关系预测结果。     

定量构效关系研究进展

本文综述了定量构效关系及化学模式识别的研究与进展。     

5,7,8位取代的喹诺酮类化合物定量构效关系的量子化学研究

５，７，８位取代的喹诺酮类化合物定量构效关系的量子化学研究俞庆森，朱龙观，林瑞森，蔡国强（浙江大学化学系杭州３１００２７）关键词：氟喹喏酮类，定量构效关系，ＣＮＤＯ／２氟喹诺酮类是一类重要的抗感染化疗药物￣［１］，近十年对其研究进展神速￣［２］，结构...     

酪氨酸激酶抑制剂的三维定量构效关系研究

利用柔性原子受体模型(FLARM)方法对一系列的异黄酮和喹诺酮衍生物表皮生长因子受体酪氨酸激酶抑制剂进行了三维定量构效关系研究，得到了合理的构效关系模型.FLARM方法的计算结果还给出了虚拟的受体模型，该模型说明了抑制剂与受体之间可能的相互作用.由该虚拟受体模型得到的受体-配体相互作用与Novartis药效团模型比较类似.     

含氟新农药的构效关系研究Ⅱ.三维定量构效关系分析

为了能更深入地认识含氟新化合物作为农药的生物活性和其结构间的关系,建立有意义的药物-受体作用模型,寻找同类化合物的药效团,对合成的含氟化合物在经典QSAR方法研究的基础上,又进一步运用DISCO,CoMFA和Leapfrog方法研究了它们的三维构效关系.首先根据化学结构,将分子进行了分类,然后再分别进行CoMFA计算,根据第I类分子的CoMFA结果,我们进行了含氯化合物的全新设计.根据各类中较好的构效关系模型,我们进行了分子的改造,预测了它们的活性.     

HCV复制抑制剂的定量构效关系的研究

选用60个结构多样的HCV复制抑制剂分子作为数据集,随机选择其中46个分子作为训练集,剩余14个分子作为验证集.采用多元线性回归(MLR)和主成分分析(PCA)方法对每个分子的646个理化和结构参数进行了线性回归分析,并分别建立各自的最优模型.结果表明MLR中的逐步和向前法所建模型最佳,模型结果为:训练集R2=0.827,验证集R2=0.850,模型能够直观地反映影响化合物活性的主要因素.该模型将有助于筛选和开发新的HCV复制抑制.     

Discodermolide及其衍生物三维定量构效关系的研究

Discodermolide是一种新颖的作用于微管蛋白的抗肿瘤化合物, 具有良好的药用前景. 为了设计出药效更好的类似物, 我们用比较分子力场分析(CoMFA)和比较分子相似性指数分析(CoMSIA)对discodermolide及其衍生物进行了三维定量构效关系(3D-QSAR)的研究, 并建立了相关的预测模型. 其中, CoMFA模型的交叉验证相关系数(q2)为0.592, 非交叉验证相关系数(r2)为0.982, 标准偏差(SEE)为0.094, F值为119.761; CoMSIA模型的q2为0.544, r2为0.980, SEE为0.098, F值为108.715. 计算结果表明, 获得的CoMFA和CoMSIA模型具有良好的预测能力, 可以应用于指导该类化合物的设计.     

后叶催产素的定量构效关系研究

基于氨基酸物化性质的描述子矢量VHSE, 对21个后叶催产素类似物进行结构表征. 经逐步回归与偏最小二乘相结合的变量筛选技术, 根据模型的外部预测结果, 筛选得到一个最优的9变量组合. 应用该变量组合对21个后叶催产素类似物的促宫缩活性进行偏最小二乘建模, 模型复相关系数R2为92.6%, 留一法和留组法交互验证Q2分别为78.3%和79.4%. 结果表明, 后叶催产素的促宫缩活性主要与第3号氨基酸残基的疏水性、立体结构和电性性质以及第8号氨基酸残基的电性特征密切相关.     

HEPT类逆转录酶抑制剂的三维定量构效关系

利用比较分子力场分析(CoMFA)方法对32个HEPT类HIV-1逆转录酶抑制剂(RTIs)的三维定量构效关系(3D-QSAR)进行了分析,建立了HIV-1逆转录酶抑制剂的3种3D-QSAR模型,发现影响其生物活性的主要因素为立体场因素,这与HIV-1RT的非底物结合部位(NNBS)的疏水性环境相吻合.进一步分析表明,适当长度的1-位侧链对保持化合物的抗病毒活性致关重要;增大5-位取代基的体积可增强生物活性;在1-位苄氧甲基的对位引入大体积基团有利于提高活性.同时考察立体场、静电场与生物活性的关系,表明,CoMFA模型为最佳预测模型,其交叉验证系数R_CV²=0.870,传统相关系数R²=0.986,标准偏差SE=0.146,F=294.546.用此模型预测了检验组3个HEPT类化合物的-lgEC₅₀,R_pred²=0.850,表明模型具有很好的预测能力,可为HEPT类HIV-1逆转录酶抑制剂的结构优化提供理论指导.     

皂甙的三维定量构效关系研究

针对目标分子柔性大的特点,在比较分子场分析(CoMFA)方法中采用交叉验证相关系数平方R^2引导的构象选择法。对12个皂甙分子的生物活性进行了三维定量构效关系研究。探讨了几种探针对构效关系结果的影响,并选择了一种较合理的“复合”探针方案。应用该复合探针构建CoMFA模型,发现影响药效的立体场与静电场的贡献分别为40%和40%,其它能量项的贡献为20%。该模型交叉验证的相关系数平方R^2为0.653,非交叉验证的R^2为0.991,方差比F(4,7)值130.195(即置信度99%以上),活性预计的标准偏差与极差比(s/△γ)为4.2%,表明模型具有较好的预测能力。根据该模型,预计在指定位置添加位阻较大的基团活性值提高将会比较明显。     

Combretastatins类微管蛋白抑制剂的定量构效关系与结合模式

以Combretastatins的B环改造化合物为研究对象, 采用遗传函数分析方法进行了二维定量构效关系研究. 研究结果表明, Apol, PMI-mag, Dipole-mag, Hbond donor和RadOfGyration等描述符对该系列抑制剂活性的贡献最大. 采用比较分子场分析方法(CoMFA)和比较分子相似因子分析方法(CoMSIA)进行了三维定量构效关系研究, 建立的CoMFA和CoMSIA模型的交叉验证相关系数q2分别为0.630和0.634, 具有较强的预测能力. 利用CoMFA和CoMSIA模型的三维等势图解析了Combretastatins类化合物的构效关系, 阐明了B环上各取代基对抑制微管蛋白聚合活性的影响, 同时应用分子对接方法分析并验证了定量构效关系模型.     

Performance and Mechanism of Alkylimidazolium Ionic Liquids as Corrosion Inhibitors for Copper in Sulfuric Acid Solution

The addition of corrosion inhibitors is an economic and environmental protection method to prevent the corrosion of copper. The adsorption, performance, and mechanism of three 1-alkyl-3-methylimidazolium hydrogen sulfate ([BMIM]HSO₄, [HMIM]HSO₄, and [OMIM]HSO₄) ionic liquids (ILs) on the copper surface in 0.5 M H₂SO₄ solutions were studied by quantum chemical calculation, quantitative structure-activity relationship (QSAR), and molecular dynamics simulation. It is found that the main reactive site is located on the imidazolium ring (especially the C2, N4, and N7 groups). When the alkyl chain of the imidazolium ring is increasing, the molecular reactivity of the ILs and the interaction between the ILs inhibitor and copper surface are enhanced. The imidazole ring of the ILs tends to be adsorbed on Cu (111) surface in parallel through physical adsorption. The order of adsorption energy is [Bmim]HSO₄ < [Hmim]HSO₄ < [OMIM]HSO₄, which is in agreement with the experimental order of corrosion efficiency. On the imidazole ring, the interaction between the copper surface and the C atom is greater than that between the copper surface and the N atom. It is found that ILs addition can hinder the diffusion of corrosion particles, reduce the number density of corrosion particles and slow down the corrosion rate. The order of inhibition ability of three ILs is [Bmim]HSO₄ < [Hmim]HSO₄ < [OMIM]HSO₄,which agree well with experimental results. A reliable QSAR correlation between the inhibition corrosion efficiency and molecular reactivity parameters of the ILs was established.     

A 3D‐QSAR Study of Celebrex‐Based Pdk1 Inhibitors Using Comfa Method

A 3D‐QSAR study of celebrex‐based compounds of PDK1 inhibitors using comparative molecular field analysis (CoMFA) was carried out. The structures of the compounds were obtained using quantum chemistry calculation. CoMFA calculations for a number of grouped subsets of compounds gave q² values of correlation in the range from 0 to 0.8. The low q² values should be mainly due to the narrow span of biological activity. Calculations for several subsets of 11–13 compounds gave high q² values, with 0.5–0.8. Factors affecting the results of the calculations are discussed. Calculated results with high q² values suggest that further chemical modifications of the compounds could lead to enhanced activity and could be an aid in the design of celebrex‐based cancer drugs.     

螺环吲哚类MDM2抑制剂的分子对接、定量构效关系和分子动力学模拟

采用分子对接、三维定量构效关系(3D-QSAR)和分子动力学方法研究了21个螺环吲哚类化合物与MDM2蛋白的相互作用, 并建立了相关预测模型. 比较分子场分析法(CoMFA)和比较分子相似性指数分析法(CoMSIA)模型的交互验证相关系数q²分别为0.573 和0.651, 非交互验证相关系数r²分别为0.948和0.980. 分子对接得到的结合模式与分子动力学模拟得到的结果一致, 结合模式表明该类螺环吲哚化合物主要通过疏水相互作用和氢键与MDM2结合. 基于上述相互作用模型设计并合成了6个新结构螺环吲哚化合物, 并在MDM2高表达的前列腺癌LNCaP细胞株上测定其活性, 结果表明化合物5, 6的半数抑制浓度均低于1μg·mL^-1, 可作为新的抗肿瘤药物先导化合物进一步深入研究. 本研究对以MDM2为靶点的新结构螺环吲哚类抑制剂的开发提供了理论和实验依据.     

Theoretical Investigation on QSAR of (2-Methyl-3-biphenylyl) methanol Analogs as PD-L1 Inhibitor

Cancer is one of the most serious issues in human life. Blocking programmed cell death protein 1 and programmed death ligand-1 (PD-L1) pathway is one of the great innovations in the last few years, a few numbers of inhibitors can be able to block it. (2-Methyl-3-biphenylyl) methanol derivative is one of them. Here, the quantitative structure-activity relationship (QSAR) established twenty (2-methyl-3-biphenylyl) methanol derivatives as the programmed death ligand-1 inhibitors. Density functional theory at the B3LPY/6-31+G(d, p) level was employed to study the chemical structure and properties of the chosen compounds. Highest occupied molecular orbital energy \begin{document}$E_{\rm{HOMO}}$\end{document}, lowest unoccupied molecular orbital energy \begin{document}$E_{\rm{LUMO}}$\end{document}, total energy \begin{document}$E_{\rm{T}}$\end{document}, dipole moment DM, absolute hardness \begin{document}$\eta$\end{document}, absolute electronegativity \begin{document}$\chi$\end{document}, softness \begin{document}$S$\end{document}, electrophilicity \begin{document}$\omega$\end{document}, energy gap \begin{document}$\Delta E$\end{document}, etc., were observed and determined. Principal component analysis (PCA), multiple linear regression (MLR) and multiple non-linear regression (MNLR) analysis were carried out to establish the QSAR. The proposed quantitative models and interpreted outcomes of the compounds were based on statistical analysis. Statistical results of MLR and MNLR exhibited the coefficient \begin{document}$R^2$\end{document} was 0.661 and 0.758, respectively. Leave-one-out cross-validation, \begin{document}$r^2_{\rm{m}}$\end{document} metric, \begin{document}$r^2_{\rm{m}}$\end{document} test, and "Golbraikh &; Tropsha's criteria" analyses were applied for the validation of MLR and MNLR, which indicate two models are statistically significant and well stable with data variation in the external validation towards PD-L1. The obtained results showed that the MNLR model predicts the bioactivity more accurately than MLR, and it may be helpful and supporting for evaluation of the biological activity of PD-L1 inhibitors.     

Synthesis of 2-Substituted Benzthiazoles as Tetramisole Analogs

Zusammenfassung Es wurde eine Reihe 2-substituierter Benzthiazole (3–11) als Analoge des 6-Phenyl-2,3,5,6-tetrahydroimidazo[2,1-b]thiazols (Tetramisol) synthetisiert. Alle dargestellten Verbindungen wurden auf ihre anthelmintische Wirkung überprüft, wobei allerdings keine nennenswerte Aktivität festzustellen war.

---

A number of 2-substituted benzthiazoles (3–11) have been synthesized as analogs of 6-phenyl-2,3,5,6-tetrahydroimidazo[2,1-b]thiazole (tetramisole). All the compounds were tested against two intestinal nematodes in rats and hamsters but none showed any noteworthy activity.

Communication No. 2845 from C.D.R.I., Lucknow, India.