Distinct electronic structures and bonding interactions in inverse-sandwich samarium and ytterbium biphenyl complexes

Inverse-sandwich samarium and ytterbium biphenyl complexes were synthesized by the reduction of their trivalent halide precursors with potassium graphite in the presence of biphenyl. While the samarium complex had a similar structure as previously reported rare earth metal biphenyl complexes, with the two samarium ions bound to the same phenyl ring, the ytterbium counterpart adopted a different structure, with the two ytterbium ions bound to different phenyl rings. Upon the addition of crown ether to encapsulate the potassium ions, the inverse-sandwich samarium biphenyl structure remained intact; however, the ytterbium biphenyl structure fell apart with the concomitant formation of a divalent ytterbium crown ether complex and potassium biphenylide. Spectroscopic and computational studies were performed to gain insight into the electronic structures and bonding interactions of these samarium and ytterbium biphenyl complexes. While the ytterbium ions were found to be divalent with a 4f¹⁴ electron configuration and form a primarily ionic bonding interaction with biphenyl dianion, the samarium ions were in the trivalent state with a 4f⁵ electron configuration and mainly utilized the 5d orbitals to form a δ-type bonding interaction with the π* orbitals of the biphenyl tetraanion, showing covalent character.

Inverse-sandwich samarium and ytterbium biphenyl complexes were synthesized and characterized by X-ray crystallography. Combined experimental and computational studies indicated that they have distinct electronic structures and bonding interactions.     

3-Cyano thiophene-based π-conjugated mesogens: XRD and 13C NMR investigations

3-Cyano thiophene-centred π-conjugated mesogens with alkoxy phenyl/biphenyl rings are synthesised by palladium acetate-catalysed direct arylation to investigate the mesophase properties and the molecular order. The synthesised mesogens mostly exhibit smectic A mesophase as confirmed by X-ray diffraction studies. Further, due to the manifestation of π-conjugated core, the mesogens exhibit photo luminescence in solution with emission maxima in the range 425–460 nm. Density functional theory and time-dependent density functional theory calculations of a representative mesogen indicate possible intramolecular charge transfer transition between the biphenyl to 3-cyanothiophene units. Despite structural simplicity, the observation of smectic A phase is attributed to location of strong dipole moment component perpendicular to the long axis of the molecules due to the presence of polar cyano group at 3-position of central thiophene ring. The ¹³C NMR studies are performed in mesophase and using the ¹³C–¹H dipolar couplings determined from 2D separated local field experiment; the order parameters of central thiophene ring and side arm phenyl rings are calculated. Moreover, the order parameter ratios of thiophene and side arm phenyl rings indicate the bent–core nature of the mesogen.     

Binding property and structure of aromatic isocyanide self‐assembly monolayers on Ag and Au surfaces

The binding property of p‐biphenyl isocyanide self‐assembled monolayers (SAMs) on Au and Ag was investigated by temperature‐dependent surface‐enhanced Raman spectroscopy (SERS). p‐Biphenyl isocyanide was found to desorb on Ag at a low temperature of ～393 K whereas it appeared to remain enduring at a high temperature of ～453 K for Au. Structures of p‐biphenyl isocyanide SAMs on Au and Ag flat films were checked by means of near‐edge x‐ray absorption fine structure spectroscopy (NEXAFS) at the two different normal (90° ) and grazing (20° ) angles of the incident x‐ray beam. Our results suggested that the SAMs prepared by p‐biphenyl isocyanide should have a relatively disordered structure even at room temperature on both Au and Ag, as indicated from an insubstantial change in NEXAFS spectra at the two different angles from those of p‐biphenyl thiolate and p‐biphenyl methanethiolate. The weakness of the isocyanide–metal bond in comparison with the sulphur–metal bond may result in both low surface coverage and orientational disorder. A density functional theory calculation method was employed to attempt to explain the difference in stability for phenyl isocyanide on Ag and Au surfaces. Our calculation result yielded a lower binding energy of phenyl isocyanide on Ag than that on Au, consistent with the temperature‐dependent Raman results. Copyright © 2005 John Wiley & Sons, Ltd.     

Solution structure of a DNA duplex containing a biphenyl pair

Hydrogen-bonding and stacking interactions between nucleobases are considered to be the major noncovalent interactions that stabilize the DNA and RNA double helices. In recent work we found that one or multiple biphenyl pairs, devoid of any potential for hydrogen bond formation, can be introduced into a DNA double helix without loss of duplex stability. We hypothesized that interstrand stacking interactions of the biphenyl residues maintain duplex stability. Here we present an NMR structure of the decamer duplex d(GTGACXGCAG) d(CTGCYGTCAC) that contains one such X/Y biaryl pair. X represents a 3',5'-dinitrobiphenyl- and Y a 3',4'-dimethoxybiphenyl C-nucleoside unit. The experimentally determined solution structure shows a B-DNA duplex with a slight kink at the site of modification. The biphenyl groups are intercalated side by side as a pair between the natural base pairs and are stacked head to tail in van der Waals contact with each other. The first phenyl rings of the biphenyl units each show tight intrastrand stacking to their natural base neighbors on the 3'-side, thus strongly favoring one of two possible interstrand intercalation structures. In order to accommodate the biphenyl units in the duplex the helical pitch is widened while the helical twist at the site of modification is reduced. Interestingly, the biphenyl rings are not static in the duplex but are in dynamic motion even at 294 K.     

Influence of the Thiophene Ring on the Molecular Order of Structurally Simple π-Conjugated Smectogens: 13C NMR Study

Structurally simple rod-like π-conjugated mesogens with thiophene directly connected to phenyl, biphenyl, and fluorenone rings with terminal chains are synthesized respectively. The occurrence of smectic A/smectic C phases is concurred by a hot-stage optical polarising microscope (HOPM), differential scanning calorimetry (DSC), and X-ray diffraction (XRD). The static 1D and 2D ¹³C nuclear magnetic resonance (NMR) studies in the liquid crystalline phase are carried out to find the alignment-induced chemical shifts (AIS) and ¹³C−¹H dipolar couplings. The orientational order parameters of the mesogens determined from ¹³C−¹H dipolar couplings disclose that the long axis is not only collinear to the C3−C4 bond of the thiophene ring but also for the local axes of phenyl and biphenyl rings. For fluorenone-based mesogen, the molecular biaxiality is found to be high owing to the increased breadth of the molecule. The study unveils that the orientation of thiophene and the phenyl rings is similar in the current mesogens in stark contrast to mesogens, where thiophene is connected to phenyl rings through linking groups.     

Conformational energy landscapes of liquid crystal molecules

The conformational energy landscape of the prototypical nematic liquid crystal 4-pentyl-4cyanobiphenyl (5CB) is studied using first principles computer modelling. It is found that the most favourable conformation occurs when the two constituent phenyl rings are inclined at an angle of 31 with respect to each other. Also, the orientation of the alkyl chain is found to have an important influence on the ring-ring torsional potential. We fit the energy surface of these coupled torsions to yield an accurate intramolecular potential for use in empirical modelling. To test the strength of the coupling between the alkyl tail and the phenyl rings and the cyano group, we also calculate potentials for the relative orientation of the phenyl rings in biphenyl and cyanobiphenyl (0CB). Our calculations are performed using density functional theory using pseudo-potentials and the generalized gradient approximation to exchange and correlation. The molecular electronic wavefunction is expanded in terms of a plane wave basis set. We compare our results with recent NMR and Gaussian-based quantum chemistry calculations where available.     

Correlations of chemical structure,atomic force microscopy (AFM) morphology,and reverse osmosis (RO) characteristics in aromatic polyester high-flux RO membranes

A homologous series of thin-film composite membranes was prepared by interfacial polymerization of various bisphenols possessing structural variations and trimesoyl chloride (TMC). Correlations between the inherent chemical nature of bisphenols with methyl or halogen substitutions on the biphenyl rings, reverse osmosis (RO) characteristics, and surface features characterized by atomic force microscopy (AFM) were studied. The methyl substitutions in bisphenol phenyl rings resulted in membranes with higher RO water flux but lower RO rejection, tending to give membrane surface morphology of irregular ambiguous nodule structure with reduced size and a smoother surface. The halogen substitutions were found to play an important role in enhancing the RO rejection of the resulting membranes; the rough surface appearance of uniform distinct nodule structure may also have contributed to obtaining higher rejections.     

Role of phenyl radicals in the growth of polycyclic aromatic hydrocarbons

To investigate the role of phenyl radical in the growth of PAHs (polycyclic aromatic hydrocarbons), pyrolysis of toluene with and without benzene has been studied by using a heatable tubular reactor couple with an in-situ sampling vacuum ultraviolet (VUV) single photon ionization (SPI) time-of-flight mass spectrometer (TOFMS) at temperatures 1155-1467 K and a pressure of 10.02 Torr with 0.56 s residence time. When benzene was added, a significant increase of phenyl addition products (biphenyl, terphenyl, and triphenylene) was observed and the mass spectra showed a clear regular sequence with an interval of approximately 74 mass number, corresponding to the phenyl addition (+C6H5) followed by H-elimination (-H) and cyclization (-H2). The analysis showed that the PAC (phenyl addition/cylization) mechanism is efficient for the growth of PAHs without a triple fusing site, for which the HACA (hydrogen abstraction/C2H2 addition) step is inefficient, and produces PAHs with five-membered rings. The PAC process was also suggested to be efficient in the subsequent growth of PAHs with five-membered rings. The role of the PAC mechanism in combustion conditions is discussed in relation to the importance of disordered five-membered ring structure in fullerene or soot core.     

X‐ray and DFT‐calculated structures of bis[N‐(quinolin‐8‐yl)benzamidato‐κ2N,N′]copper(II)

The application of transition metal chelates as chemotherapeutic agents has the advantage that they can be used as a scaffold around which ligands with DNA recognition elements can be anchored. The facile substitution of these components allows for the DNA recognition and binding properties of the metal chelates to be tuned. Copper is a particularly interesting choice for the development of novel metallodrugs as it is an endogenous metal and is therefore less toxic than other transition metals. The title compound, [Cu(C₁₆H₁₁N₂O)₂], was synthesized by reacting N‐(quinolin‐8‐yl)benzamide and the metal in a 2:1 ratio. Ligand coordination required deprotonation of the amide N—H group and the isolated complex is therefore neutral. The metal ion adopts a flattened tetrahedral coordination geometry with the ligands in a pseudo‐trans configuration. The free rotation afforded by the formal single bond between the amide group and phenyl ring allows the phenyl rings to rotate out‐of‐plane, thus alleviating nonbonded repulsion between the phenyl rings and the quinolyl groups within the complex. Weak C—H…O interactions stabilize a dimer in the solid state. Density functional theory (DFT) simulations at the PBE/6‐311G(dp) level of theory show that the solid‐state structure (C1 symmetry) is 79.33 kJ mol⁻¹ higher in energy than the lowest energy gas‐phase structure (C2 symmetry). Natural bond orbital (NBO) analysis offers an explanation for the formation of the C—H…O interactions in electrostatic terms, but the stabilizing effect is insufficient to support the dimer in the gas phase.     

Conformational Tuning of the Intramolecular Electronic Coupling in Molecular‐Wire Biruthenium Complexes Bridged by Biphenyl Derivatives

The synthesis and characterization of a series of biphenyl‐derived binuclear ruthenium complexes with terminal {RuCl(CO)(PMe₃)₃} moieties and different structural arrangements of the phenyl rings are reported. Electrochemical studies revealed that the two metal centers of the binuclear ruthenium complexes interact with each other through the biphenyl bridge, and the redox splittings ΔE_1/2 show a strong linear correlation with cos² ?, where ? is the torsion angle between the two phenyl rings. A combination of electrochemical, UV/Vis/NIR, and in situ IR differential spectroelectrochemical analysis clearly showed that: 1) the intramolecular electronic couplings in the binuclear ruthenium complexes could be modulated by changing ?; 2) the electronic ground state of the mixed‐valent cations changes from delocalized to localized through the biphenyl bridge with increasing torsion angle ?, that is, the redox processes of these complexes change from significant involvement of the bridging ligand to an oxidation behavior with less participation of the bridge.     

Encapsulation of metal cations by the PhePhe ligand: a cation-π ion cage

Structures and binding thermochemistry are investigated for protonated PhePhe and for complexes of PhePhe with the alkaline-earth ions Ba(2+) and Ca(2+), the alkali-metal ions Li(+), Na(+), K(+), and Cs(+), and the transition-metal ion Ag(+). The two neighboring aromatic side chains open the possibility of a novel encapsulation motif of the metal ion in a double cation-π configuration, which is found to be realized for the alkaline-earth complexes and, in a variant form, for the Ag(+) complex. Experimentally, complexes are formed by electrospray ionization, trapped in an FT-ICR mass spectrometer, and characterized by infrared multiple photon dissociation (IRMPD) spectroscopy using the free electron laser FELIX. Interpretation is assisted by thermochemical and IR spectral calculations using density functional theory (DFT). The IRMPD spectrum of protonated PhePhe is reproduced with good fidelity by the calculated spectrum of the most stable conformation, although the additional presence of the secondmost stable conformation is not excluded. All metal-ion complexes have charge-solvated binding modes, with zwitterion (salt bridge) forms being much less stable. The amide oxygen always coordinates to the metal ion, as well as at least one phenyl ring (cation-π interaction). At least one additional chelation site is always occupied, which may be either the amino nitrogen or the carboxy carbonyl oxygen. The alkaline-earth complexes prefer a highly compact caged structure with both phenyl rings providing cation-π stabilization in a "sandwich" configuration (OORR chelation). The alkali-metal complexes prefer open-cage structures with only one cation-π interaction, except perhaps Cs(+). The Ag(+) complex shows a unique preference for the closed-cage amino-bound NORR structure. Ligand-driven perturbations of normal-mode frequencies are generally found to correlate linearly with metal-ion binding energy.     

Über den mechanismus der licht-induzierten eliminierung des biphenyl-systems aus cis-bis(phenyl)platin(II)-verbindungen

We report the light-induced reductive elimination of the biphenyl system from compounds of the types bis(phenyl)[η²-1,2-bis(diphenylphosphano)ethan]platinum(II), bis(phenyl)[η²-cis-1,2-bis(diphenylphosphano)ethene]platinum(II) and bis(phenyl)[η²-1,2-bis(diphenylphosphano)benzene]platinum(II) with substituents in the platinum-bound phenyl rings. The elimination proceeds via a concerted reaction mechanism without any observable free radical involvement.     

Synthesis of N-heterocyclic carbene precursors bearing biphenyl units and their use in ruthenium-catalyzed ring-opening metathesis polymerization

A range of new imidazolium and imidazolinium chlorides bearing biphenyl units on their nitrogen atoms was synthesized. They differed by the electron-withdrawing or -donating nature and the steric bulk of the substituents on their aromatic rings. These various N-heterocyclic carbene (NHC) precursors were combined with the [RuCl₂(p-cymene)]₂ dimer and potassium tert-butoxide to generate the corresponding ruthenium-arene complexes [RuCl₂(p-cymene)(NHC)] in situ. The catalytic activity of these species was investigated in the photoinduced ring-opening metathesis polymerization (ROMP) of cyclooctene. The results obtained confirmed the necessity of blocking the ortho-positions of the phenyl rings in the vicinity of the metal center in order to attain high catalytic efficiencies. They also showed that changing the steric and electronic properties of the substituents on the remote phenyl rings of the biphenyl units had no significant influence on the outcome of the polymerization.     

Synthesis and photophysical studies of siloxane-tethered cyclophanes

Novel siloxane tethered para divinylarene cyclophanes, containing phenyl, biphenyl and naphthalene rings as the aromatic nuclei, were prepared by the hydrolytic condensation of the corresponding bis{[dimethyl(i-propoxy)silyl]vinyl}arenes under basic conditions.The photophysics of the cyclophanes were investigated using UV and fluorescence spectroscopy.     

Core excitations of biphenyl

High-resolution C(1s) near-edge X-ray absorption and X-ray photoionization spectra of the free biphenyl molecule are presented and theoretically analyzed in order to allow an assignment of the observed spectral features. Finite lifetime broadening, a high density of vibrational states, and a strong overlap of contributions from chemically different carbon atom sites only partially allow resolving the vibrational fine structure. However, the shape and width of the spectral profiles are strongly determined by both chemical shifts and vibronic effects. In particular, different from photoionization of valence levels, both types of core level spectra do not contain contributions from dihedral modes which are related to the twisting motion of the two phenyl rings. Contrary to naphthalene, C-H stretching modes are significantly enhanced in the core excitation spectra of biphenyl while the contributions from C-C stretching modes are reduced.     

Rebek Imide Platforms as Model Systems for the Investigation of Weak Intermolecular Interactions

A Rebek imide receptor with an acetylene‐linked phenyl ring complexes 2,6‐di(isobutyramido)pyridine in (CDCl₂)₂ via triple H‐bonding and π–π‐stacking interactions, and the influence of para‐substituents on both rings was investigated by ¹H NMR binding titrations. When the phenyl ring was extended to biphenyl and the C(4)‐pyridine substituent varied, interaction energies increased in the order CH₃CH₂???phenyl<CH₃S???phenyl<phenyl???phenyl?N‐methylcarboxamide???phenyl, highlighting the energetic gain from π stacking on amide fragments. The predicted preference of amide–π stacking for an antiparallel alignment of the local dipoles could not be confirmed with the studied system. Different substituents were introduced in the para position of the phenyl ring and their interaction with bound 2,6‐di(isobutyramido)pyridine was investigated. Theoretical predictions that the mere introduction of a substituent has a stabilizing effect on π–π stacking, regardless of its electronic nature, were experimentally confirmed.     

Self-assembled monolayers from biphenyldithiol derivatives: optimization of the deprotection procedure and effect of the molecular conformation

A series of biphenyl-derived dithiol (BDDT) compounds with terminal acetyl-protected sulfur groups and different structural arrangements of both phenyl rings have been synthesized and fully characterized. The different arrangements were achieved by introducing hydrocarbon substituents in the 2 and 2' positions of the biphenyl backbone. The presented model compounds enable the investigation of the correlation between the intramolecular conformation and other physical properties of interest, like, e.g., molecular assembly or electronic transport properties. Here, the ability of these model compounds to form self-assembled monolayers (SAMs) on Au(111) and Ag(111) is investigated in details. The deprotection of the target molecules was performed in situ using either NH4OH or triethylamine (TEA) deprotection agent. The fabricated films were characterized by synchrotron-based high-resolution photoelectron spectroscopy and near-edge absorption fine structure spectroscopy. Whereas the deprotection by NH4OH was found to result in the formation of multilayer films, the deprotection by TEA allowed the preparation of densely packed BDDT SAMs with a noticeably higher orientational order and smaller molecular inclination on Ag than on Au. Introduction of the alkyl bridge between the individual rings of the biphenyl backbone did not lead to a noticeable change in the structure and packing density of the BDDT SAMs as long as the molecule had a planar conformation in the respective SAM. The deviation from this conformation resulted in the deterioration of the film quality and a decrease of the orientational order.     

Synthesis and Structure of Triphenylscandium-bis(tetrahydrofuran)

Metathesis reaction of ScCl₃(THF)₃ with 3 equiv. of phenyllithium in THF/Et₂O solution affords ScPh₃(THF)₂ ( 1 ) in good yield. The crystallographically determined molecular structure of 1 reveals a trigonal-bipyramidal coordination sphere with the THF molecules in the axial positions and Sc–C bonds of 2.245(4)–2.266(4) Å. The σ-bound phenyl groups are only slightly twisted (0, 8, 18°) with respect to the ScC₃ plane. Ab initio calculations suggest that the THF molecules play some direct role in the moderate coplanarity of the phenyl rings.     

Vibrational spectra and structure of 4-cyano-4′-pentalkoxybiphenyl in different physical states

The polymorphism, conformation mobility and structure of 4-cyano-4′-pentalkoxybiphenyl (5OCB) in different physical states are studied by IR spectroscopy. The spectra were measured in the frequency range 400–4000 cm⁻¹ at temperatures from 300 to 350 K. The IR spectra of 5OCB are modeled using the concept of conformational mobility of these molecules. An analysis of the experimental and theoretical spectra reveals absorption bands whose spectroscopic parameters are sensitive to variations of temperature (experiment) and conformation (theory); a relationship between these changes is established. It is concluded that the polymorphism of 5OCB is of conformation type. In the solid crystalline state, 5OCB molecules have conformations with a planar biphenyl fragment; the angle of orientation of the plane of the carbon framework of the alkyl radical relative to the biphenyl fragment decreases as the temperature increases from 35° in the solid crystalline state to 10° in the liquid crystalline and isotropic liquid states. In both of these states the biphenyl fragment becomes nonplanar. The angle between the phenyl rings is up to 30°. Saratov State University. Institute of Physics, Ukrainian Academy of Sciences. Samarkand State University. Translated fromZhurnal Strukturnoi Khimii, Vol. 39, No. 1, pp. 55–60, January–February, 1998. This work was supported by RFFR grant No. 97-03-32175a.     

Density functional theory studies on the reagent Ph3PBr2

We report density functional theory geometry optimizations at the B3LYP/6-311G(d,p) level of theory for the title reagent. Four stationary points on the molecular potential energy surface were located and characterized. Three of these stationary points are energy minima, one a saddle point. The minima correspond to the conventional Ph3PBr2 (three-fold Br-P-Br axis with twisted phenyl rings), the ion-pair [Ph3PBr]+Br- and a four-coordinated Ph3PBr2 spoke structure that can best be described as charge transfer on account of the substantial charge transfer from the Ph3P fragment to Br2 (as determined by a standard Mulliken population analysis and other considerations). The particular saddle point found corresponds to a three-fold Br-P-Br structure with coplanar phenyl rings. Single point B3LYP/6-311+g(3d,2p) calculations were done at the stationary point geometries in order to investigate possible deficiencies in the basis set. Solvent effects for the three solvents water, dichloroethane and cyclohexane were modelled using the self consistent reaction field Onsager method at the single point B3LYP/6-311+g(3d,2p) level of theory. In the gas phase, the charge transfer complex is the most stable of the four; in solution it is the least stable.