Synthesis and characteristics of sugar-phosphoramidates: A spectroscopic study

Phosphoramidate-incorporated scaffolds are structurally important targets owing to their diverse applications, particularly in medicinal chemistry. Herein we report the synthesis of several sugar phosphoramidates in excellent yields. NMR analyses were undertaken to examine their intramolecular H-bonding, stability under acidic conditions, and chemical shift effects.     

Green approaches for the synthesis of nucleotides,their conjugates and analogues

Abstract

We have developed original one-pot and protecting group-free approaches, which are also user-friendly and reliable, to synthesize nucleotides and derivatives starting from nucleoside 5’-monophosphates. Both methods present convenient set-up, i.e., non-dry solvents and reagents, substrates in their sodium or acid form, and commercially available and cheap phosphorus reagents as sodium and potassium salts.     

2,3,6-三甲基苯醌的合成(英)

由 ２，３，６三甲基苯酚催化氧化合成了 ２， ３，６三甲基苯醌，确定了最佳工艺条件，使产率达到了 ８８．１％ 。     

An environmentally benign and practical synthesis of sugar orthoesters promoted by potassium fluoride

An extremely practical method for synthesis of sugar orthoesters has been developed without using any organic amines or heavy metals as additives. Various sugar orthoesters were prepared in good yields by the reaction of an acylated glycosyl bromide and an alcohol in the presence of potassium fluoride.     

New polycationic polynorbornene latexes bearing an amphiphilic sugar corona of counterions: synthesis and complexation with DNA

A new family of polycationic polynorbornene with ω-gluconamidoalkanoates and ω-lactobionamidoalkanoates as amphiphilic counterions has been prepared. These polymers spontaneously form stable latexes in water with an amphiphilic sugar corona around the particles. With these counterions, the sugar moieties are separated from the surface of latex particles by the aminoalkanoic acid residue and consequently are remote from the surface of such latexes. Such location of sugar may promote their stronger interaction with cell receptors. These original amphiphilic compartmentalized surface polycationic latexes are able to bind and efficiently complex DNA in very small complexes. Furthermore, because of the effect of the sugar corona on the formation of the complexes, there is only a slight influence of the hydrophobicity of the counterions on DNA packing.     

Synthesis of novel dihydrooxazine and oxazoline based sugar hybrids from sugar azides

A convenient one-step method for the synthesis of novel dihydrooxazine and oxazoline based sugar hybrids is reported starting from the readily accessible sugar azides and aldehydes. We have used Aubé’s protocol to achieve this transformation. The resulting glycoconjugates could be used to increase the diversity on the sugar backbone and may find applications as potential glycomimetics and in drug discovery.     

Biaryl-bridged Schiff base complexes of zirconium alkyls: synthesis structure and stability

Three substituted salicylaldimine derivatives H₂L^1-3 of 2,2′-diamino-6,6′-dimethylbiphenyl give, under appropriate conditions, isolable alkyls of zirconium [ZrL^1-3R₂] (R=CH₂Ph, CH₂Bu^t). Two molecular structures confirm their cis-α geometry (C₂-symmetric with cis alkyl ligands). They decompose via 1,2-migratory insertion of an alkyl group to imine, followed in some instances by a second similar reaction. The dimeric molecular structure of one such doubly-inserted product is presented. The kinetics of decomposition by this process are studied briefly, and it is noted that the rate increases with increased steric demand of the salicylaldimine unit.     

Alkylsulfanylphenyl derivatives of cytosine and 7-deazaadenine nucleosides, nucleotides and nucleoside triphosphates: synthesis, polymerase incorporation to DNA and electrochemical study

Aqueous Suzuki–Miyaura cross‐coupling reactions of halogenated nucleosides, nucleotides and nucleoside triphosphates derived from 5‐iodocytosine and 7‐iodo‐7‐deazaadenine with methyl‐, benzyl‐ and tritylsufanylphenylboronic acids gave the corresponding alkylsulfanylphenyl derivatives of nucleosides and nucleotides. The modified nucleoside triphosphates were incorporated into DNA by primer extension by using Vent(exo‐) polymerase. The electrochemical behaviour of the alkylsulfanylphenyl nucleosides indicated formation of compact layers on the electrode. Modified nucleotides and DNA with incorporated benzyl‐ or tritylsulfanylphenyl moieties produced signals in [Co(NH₃)₆]³⁺ ammonium buffer, attributed to the Brdi?ka catalytic response, depending on the negative potential applied. Repeated constant current chronopotentiometric scans in this medium showed increased Brdi?ka catalytic response, which suggests the deprotection of the alkylsulfanyl derivatives to free thiols under the conditions.     

The search for a potentially prebiotic synthesis of nucleotides via arabinose-3-phosphate and its cyanamide derivative

For the RNA world hypothesis to be accepted, the constitutional self-assembly of RNA will have to be demonstrated. Conceptually, the simplest route to RNA involves nucleotide polymerisation. Activated pyrimidine nucleotides can be derived from arabinose-3-phosphate under potentially prebiotic conditions, but the prebiotic synthesis of this sugar phosphate has not hitherto been investigated. The results of synthetic approaches involving phosphorylation, phosphate migration and 2,3-C--C bond construction are described herein.     

Unusually broad substrate tolerance of a heat-stable archaeal sugar nucleotidyltransferase for the synthesis of sugar nucleotides

Herein, we report the first cloning, recombinant expression, and synthetic utility of a sugar nucleotidyltransferase from any archaeal source and demonstrate by an electrospray ionization mass spectrometry (ESI-MS)-based assay its unusual tolerance of heat, pH, and sugar substrates. The metal-ion-dependent enzyme from Pyrococcus furiosus DSM 3638 showed a relatively high degree of acceptance of glucose-1-phosphate (Glc1P), mannose-1-phosphate (Man1P), galactose-1-phosphate (Gal1P), fucose-1-phosphate, glucosamine-1-phosphate, galactosamine-1-phosphate, and N-acetylglucosamine-1-phosphate with uridine and deoxythymidine triphosphate (UTP and dTTP, respectively). The apparent Michaelis constants for Glc1P, Man1P, and Gal1P are 13.0 +/- 0.7, 15 +/- 1, and 22 +/- 2 microM, respectively, with corresponding turnover numbers of 2.08, 1.65, and 1.32 s(-1), respectively. An initial velocity study indicated an ordered bi-bi catalytic mechanism for this enzyme. The temperature stability and inherently broad substrate tolerance of this archaeal enzyme promise an effective reagent for the rapid chemoenzymatic synthesis of a range of natural and unnatural sugar nucleotides for in vitro glycosylation studies and highlight the potential of archaea as a source of new enzymes for synthesis.     

Synthesis of UDP-GalNAc analogues as probes for the study of polypeptide-α-GalNAc-transferases. Part 2

The synthesis of four UDP-GalNAc analogues (1-4) is described. The 3-, 4- and 6-deoxygenated analogues 1-3 were obtained by way of a divergent strategy starting from a 3,6-di-O-pivaloyl GlcNAc derivative as a common precursor. Analogue 4 bearing a N-trifluoroacetamido group was prepared from the trifluoromethylated oxazoline 24 as key intermediate. These compounds were designed to probe the substrate specificity of polypeptide-α-GalNAc transferases.     

应用近红外光谱技术分析烟丝总糖和还原糖的研究

应用傅立叶变换近红外漫反射光谱仪,对同一品牌通过选择不同批号代表性好的卷烟烟丝样品,建立了卷烟烟丝总糖和还原糖的近红外定量分析数学模型,并对不同批号的分析样品进行检验,近红外预测值的平均相对误差为1.01%和0.77%,接近实测值,说明近红外光谱分析技术可用于卷烟烟丝生产质量指标的检测.     

Stereoselective chemical synthesis of sugar nucleotides via direct displacement of acylated glycosyl bromides

[structure: see text]. The use of Leloir glycosyltransferases to prepare biologically relevant oligosaccharides and glycoconjugates requires access to sugar nucleoside diphosphates, which are notoriously difficult to efficiently synthesize and purify. We report a novel stereoselective route to UDP- and GDP-alpha-D-mannose as well as UDP- and GDP-beta-L-fucose via direct displacement of acylated glycosyl bromides with nucleoside 5'-diphosphates.     

Mesoporous templated silicates: an overview of their synthesis,catalytic activation and evaluation of the stability

The most recent developments in the formation of new mesoporous templated zeolitic materials, characterized by surfaces of more than 1000 m(2)/g, are discussed in this paper. By adapting the synthesis parameters, such as type of silicium source, type of template, pH, temperature, em leader different materials can be synthesized with varying porosity and crystallinity. Besides the synthesis, much attention is focused on the activation of their surfaces by incorporation methods or deposition processes towards catalytic applications. Finally, the stability of the different materials, one of the critical parameters to potential industrial applications, is compared and evaluated.     

Synthesis and Characterization of Novel Thiosemicarbazones Bearing Sugar Moieties

IntroductionIt is well known that carbohydrates play importantroles in a wide variety of biological processes[1], suchas cell adhesion to the extracellular matrix and cell sig-naling. They can also act as the ligands for growth fac-tors[2,3].Substituted t…     

Recent Progress in Enzymatic Synthesis of Sugar Nucleotides

Glycosylation is one of the most important reactions in nature as it results in the formation of glycoconjugates with diverse biological functions. Sugar nucleotides serve as the natural donor molecules for the biosynthesis of such glycoconjugates and other carbohydrates. Furthermore, these donor molecules are also indispensable building blocks for the enzymatic synthesis of carbohydrates in vitro using Leloir-type glycosyltransferases. Given such importance, the biosynthetic pathways of sugar nucleotides have been exploited, enabling the development of both chemical and enzymatic approaches to produce these molecules. A survey of recent progress in enzymatic synthesis of common mammalian sugar nucleotides as well as their derivatives is thus presented. As a popular strategy, conjugation of sugar nucleotide synthesis with glycosyltransfer reactions and in vivo production of sugar nucleotides are also included.     

Comparison of the acid-base properties of ribose and 2'-deoxyribose nucleotides

The extent to which the replacement of a ribose unit by a 2'-deoxyribose unit influences the acid-base properties of nucleotides has not hitherto been determined in detail. In this study, by potentiometric pH titrations in aqueous solution, we have measured the acidity constants of the 5'-di- and 5'-triphosphates of 2'-deoxyguanosine [i.e., of H(2)(dGDP)(-) and H(2)(dGTP)(2-)] as well as of the 5'-mono-, 5'-di-, and 5'-triphosphates of 2'-deoxyadenosine [i.e., of H(2)(dAMP)(+/-), H(2)(dADP)(-), and H(2)(dATP)(2-)]. These 12 acidity constants (of the 56 that are listed) are compared with those of the corresponding ribose derivatives (published data) measured under the same experimental conditions. The results show that all protonation sites in the 2'-deoxynucleotides are more basic than those in their ribose counterparts. The influence of the 2'-OH group is dependent on the number of 5'-phosphate groups as well as on the nature of the purine nucleobase. The basicity of N7 in guanine nucleotides is most significantly enhanced (by about 0.2 pK units), while the effect on the phosphate groups and the N1H or N1H(+) sites is less pronounced but clearly present. In addition, (1)H NMR chemical shift change studies in dependence on pD in D(2)O have been carried out for the dAMP, dADP, and dATP systems, which confirmed the results from the potentiometric pH titrations and showed the nucleotides to be in their anti conformations. Overall, our results are not only of relevance for metal ion binding to nucleotides or nucleic acids, but also constitute an exact basis for the calculation, determination, and understanding of perturbed pK(a) values in DNAzymes and ribozymes, as needed for the delineation of acid-base mechanisms in catalysis.     

Quantum chemical determination of molecular geometries and interpretation of FTIR and Raman spectra for 2,3,4-and 2,3,6-tri-fluoro-benzonitriles

Raman and FTIR spectra for 2,3,4- and 2,3,6-tri-fluoro-benzonitriles have been recorded in the regions 50–4000 cm⁻¹ and 400–4000 cm⁻¹, respectively. Measurement of depolarization ratios for the Raman lines has also been made. Optimized geometrical parameters, charge distributions and vibrational wavenumbers were calculated using ab initio quantum chemical method. Normal coordinate analysis has also been carried out to help assign the fundamentals of these molecules. Each vibration has been assigned using observed wavenumbers in the IR and Raman spectra and their relative intensities, depolarization ratios of the Raman lines, the calculated frequencies, vector displacements and potential energy distributions (PEDs).