Quantum Chemical Study of Hydroxyand Formyl-Substituted Benzenonium Ions

Substituted benzenonium ions (protonated benzene derivatives) model the intermediates in electrophilic aromatic substitution reactions. This paper presents a quantum chemical study at the MP2/6-31G* level of the various cations that could result from mono-protonation of phenol and benzaldehyde. Five isomeric ions were investigated in each case, the four benzenonium ions resulting from protonation at an ortho, meta, para, or ipso position, and the ion resulting from protonation at the oxygen. The results show the effects of the hydroxy and formyl substituents on the relative energies of the isomeric benzenonium ions. Wiberg bond orders and Reed–Weinhold (NPA or natural) atomic charges are also reported.     

Synthesis of 2,3-diaryltetrazole-5-thiones and theoretical studies on atomic charge distributions of 2,3-diphenyltetrazole-5-thione

Four 2,3-diaryltetrazole-5-thiones have been synthesized in high yields using a new synthetic method under mild reaction conditions. Theoretical calculations of the structure, vibrational frequencies, and natural population analysis (NPA) of atomic charge distributions on 2,3-diphenyltetrazole-5-thione 1 have been performed by DFT-B3LYP, HF, and MP2 methods using several basis sets. According to the NPA results a new resonance hybrid structure of 1 has been proposed with an exocyclic sulfur atom and a tetrazole ring carrying negative charges and two phenyl rings having positive charges. On the basis of this new proposed structure, the calculated results can explain experimental facts logically. In addition, a new chemical property of 1 has been predicted: the protonation should occur not only on the exocyclic S atom, but also on the N atoms having negative charges.     

Charge calculations in molecular mechanics. III: Amino acids and peptides

Atomic charges obtained with a previously published charge scheme are given for amino acids and peptides. In order to do this, a method of handling charged species with the basic scheme^2,3 has been developed. The charges obtained for alkylammonium ions and carboxylate ions with the scheme are presented and compared with CNDO and ab initio values. The calculated experimental dipole moments of the zwitterionic forms of glycine, alanine and β-alanine are then discussed. Finally, the atomic charges obtained for the naturally occurring amino acids are given, both in the form of the N-acetyl-N′-methyl amino acid amides, used as models for the amino acid residues in enzymes, and as the free zwitterionic amino acids. The charges obtained show a good correlation with n. m. r. chemical shifts of both carbon and hydrogen atoms.     

DNA碱基的电子相关效应

分别在Hartree-Fock和二级Moller-Plesset微扰理论MP2的电子相关校正水平, 用6-31G^*^*基函数对四种DNA碱基胞嘧啶、胸腺嘧啶、鸟嘌呤和腺嘌呤的能量、偶极矩、电荷分布和分子静电势等性质进行了系统的从头计算研究。其中, 采用Z矢量方法在波函数中加入MP2级别的电子相关校正; 分别用Mulliken布居分析、静电势导出电荷CHELPG以及自然布居分析NPA方法计算分子中原子电荷。在上述计算结果的基础上, 系统地分析了DNA碱基的电子相关效应。     

Linear Free‐Energy Relationships Applied to the 13C NMR Chemical Shifts in 4‐Substituted N‐[1‐(Pyridine‐3‐ and ‐4‐yl)ethylidene]anilines

Two series of 4‐substituted N‐[1‐(pyridine‐3‐ and ‐4‐yl)ethylidene]anilines have been synthesized using different methods of conventional and microwave‐assisted synthesis, and linear free‐energy relationships have been applied to the ¹³C NMR chemical shifts of the carbon atoms of interest. The substituent‐induced chemical shifts have been analyzed using single substituent parameter and dual substituent parameter methods. The presented correlations describe satisfactorily the field and resonance substituent effects having similar contributions for C1 and the azomethine carbon, with exception of the carbon atom in para position to the substituent X. In both series, negative ρ values have been found for C1′ atom (reverse substituent effect). Quantum chemical calculations of the optimized geometries at MP2/6‐31G++(d,p) level, together with ¹³C NMR chemical shifts, give a better insight into the influence of the molecular conformation on the transmission of electronic substituent effects. The comparison of correlation results for different series of imines with phenyl, 4‐nitrophenyl, 2‐pyridyl, 3‐pyridyl, 4‐pyridyl group attached at the azomethine carbon with the results for 4‐substituted N‐[1‐(pyridine‐3‐ and ‐4‐yl)ethylidene]anilines for the same substituent set (X) indicates that a combination of the influences of electronic effects of the substituent X and the π₁‐unit can be described as a sensitive balance of different resonance structures.     

Influence of the polarization effect on the donor properties of 1-phenylsilatrane

A new mechanism of the dipole—induced dipole polarization interaction was considered to explain an anomalous increase in the +I effect in a 1-phenylsilatrane molecule with the pentacoordinated Si atom. The interaction through the space between the silatrane cage having a high dipole moment and easily polarizable aromatic phenyl substituent induces dipole that adds the influence of the inductive effect along the bonds, which is characteristic of usual silatranes. The high inductive constant σ_I calculated for 1-phenylsilatrane on the basis of chemical shifts δ_C of aromatic carbon atoms was interpreted as a superelectronodonor effect in silatranes. However, the polarization effect through the space leads to a substantial change in the chemical shifts δ_C for the phenyl group in the direction that formally corresponds to the enhancement of the +I effect transmitted via the bonds. It is shown for the first time that the inductive effect in silatranes is not constant and varies according to the polarizability of the substituent at the Si atom.     

Carbon-13 and proton magnetic resonance studies of some carbonyl-bis-(amino acid esters)

A number of carbonyl-bis-(amino acid esters) have been examined by proton and carbon-13 nuclear magnetic resonance techniques. All but one of the compounds were synthesized with two chiral centers of like-configuration. In one series, the diastereotopic nonequivalence of isopropyl methyl groups attached to the asymmetric centers is apparent in both the proton and the carbon spectra, and the relative magnitude of the observed nonequivalence increases slightly with increasing ‘bulk’ of the neighboring ester groups. Carbon-13 chemical shifts are reported, and a linear correlation of Taft σ* inductive constants with ester carbonyl carbon chemical shifts and with amide proton chemical shifts (for a series in which only variation of the ester substituent occurs) is presented. In addition, the effect in terms of chemical shift differences of keeping the same ester group at the asymmetric centers while varying the other substituent group, is examined.     

Etudes des sélénophènes mono et bisubstitués par Résonance Magnétique de 1H et de 13C

Proton and carbon magnetic resonance spectra of mono-and disubstituted selenophenes are investigated. The proton chemical shifts are discussed in terms of magnetic anisotropy and electric field effects of the substituents, with a view to studying the conformational equilibrium of the carbonyl group. π Electronic charges, computed by the PPP method, are correlated with the proton and carbon chemical shifts. The coupling constants between ¹³C and ¹H (1, 2 or 3 bonds) and ¹³C? ⁷⁷Se are shown to be good structural parameters and a set of substituent additivity constants is calculated.     

Methyl carbon chemical shifts of methylbenzoic acids and methylbenzoate anions

Methyl carbon chemical shifts have been assigned for methylbenzoic acids dissolved in CDCl₃, and for methylbenzoate anions obtained by dissolving these acids in aqueous NaOH solution. Chemical shifts have been interpreted by means of additive substituent parameters which reflect conformational features existing between adjacent substituents. Barriers to rotation of a methyl group adjacent to a carboxyl or carboxylate group have been estimated to differ by less than 2 kJ mol^?1 from the barrier of a methyl group in o-xylene.     

Hartree-Fock, Møller-Plesset calculations and dynamic NMR study of 3,3-dimethoxy-1-(imidazolidin-2-ylidene)propan-2-one

The experimental (1)H, (13)C NMR spectra of 3,3-dimethoxy-1-(imidazolidin-2-ylidene)propan-2-one were recorded in CDCl(3) at temperature range 213-323 K. The variable temperature spectra revealed a dynamic NMR effect which is attributed to restricted rotation around the C=C double bond. Fast exchange processes of deuterium atoms between CDCl(3) and 3,3-dimethoxy-1-(imidazolidin-2-ylidene)propan-2-one or fast exchange of proton between nitrogen and oxygen atoms of carbonyl group is also revealed by broadening of N-H (singlet) proton NMR signals. Proton and carbon theoretical chemical shifts of the title molecule were calculated by using RHF and MP2-GIAO levels and different basis sets in gas phase at 298 K. The calculated proton chemical shifts show that the experimental values have no agreement with theoretical values, but for carbon chemical shifts a good agreement achieved by using RHF with 6-31G basis set and MP2/3-21G, 6-31G basis sets. Discrepancies are attributed to either the limitations of calculating program, because the change of the structure while rotation are not considered. The results showed that to select of basis set has more important rule, because RHF-GIAO level calculation with 6-31G basis set in gas phase can excellently reproduce the (13)C NMR spectrum. Moreover, MP2/3-21G, 6-31G calculation has not significant influence on (13)C NMR chemical shifts with respect to RHF-6-31G.     

Regioselectivity in iron-catalyzed [2+2+1] cycloadditions: a DFT investigation of substituent effects in 1,4-diazabutadienes

The transition-metal-catalyzed [2+2+1] cycloaddition reaction of 1,4-diazabutadienes, in which the imine-carbon atoms are part of an oxazine ring system, with ethylene and carbon monoxide leads to the regioselective formation of pyrrolidinone derivatives. To explain this regioselectivity, the transition states and intermediates of the rate-determining step of the catalysis are determined by high-level DFT calculations. The experimentally observed regioselectivity is consistent with the lower activation energy of the addition of ethylene towards the carbon atom next to the oxazine oxygen atom. Furthermore, the activation barrier of a conceivable back reaction is higher for the intermediates with the experimentally observed regioselectivity. These thermodynamic and kinetic arguments at first sight appear to be confirmed by the calculated NPA charges in the transition states, which reveal that the differences in these charges are greatest for those transition states that lead to the formation of the energetically favored transition structures. Nevertheless, calculations of analogous transition structures and reaction products starting from 1,4-diazabutadienes with a 2-fluoro, 2-hydroxo or 2-amino substituent revealed that the regioselectivity is not determined by the electronegativity of the heteroatom and thus by the differences in the NPA charges or the resulting Coulombic interactions in the transition structures. The main reason for the observed regioselectivities is the pi-donor ability of the substituent to contribute to a delocalized pi system incorporating the adjacent imine moiety. The increasing pi-donor capability results in decreased reactivity of this moiety and increases the (relative) reactivity of the second imine group. This effect can even overcompensate for strong intramolecular Coulombic attractions in the transition structures.     

Hofmeister离子对水溶液中热响应聚合物的局域环境的影响

The Hofmeister ion effect is a very interesting but elusive phenomenon, the importance of which is revealed in self-assembly, ion recognition, and protein folding regulation. With an increasing number of studies suggesting that interactions between ions and solutes play a role in the Hofmeister ion effect, the nature of the Hofmeister phenomenon becomes more debatable. Yet, it is not clear whether the Hofmeister ion effect is a local effect or bulk effect that can reach beyond many hydration shells, where specific interactions between ions and solutes play key roles. In order to further explore this, we applied proton nuclear magnetic resonance (¹H-NMR) spectroscopy to study the effects of specific ions on the local environment around N, N-dimethylpropionamide (NDA) and N-isopropylisobutyramide (NPA), which are the model compounds for poly(2-ethyl-2-oxazoline) and poly(N-isopropylacrylamide), respectively. These polymers are important bio-engineering materials that possess thermoresponsive properties and are also subject to specific ion effects. By correlating the changes in chemical shifts of the two methyl groups on either side of the amide bond, it was found that the Hofmeister ion effects on NPA were more anisotropic than on NDA, and that the cationic effects were more anisotropic than the anionic effects on NPA. These results indicated that the effects of specific ions were almost identical for all methyl groups of NDA. On the other hand, NPA is a larger molecule; thus, not all of its methyl groups were subjected to the specific ion effects to the same extent. The calculation of the electrostatic potential surfaces of NDA and NPA suggested that these observations on the Hofmeister ion effects might be due to steric hindrance, and that the observations on the cationic effects might be due to the interactions between cations and NPA being stronger than the interactions between anions and NPA. This would explain why the highly charged cations caused a significant anisotropicity. Additionally, we found that the chemical shift of the water protons (Δδ_H2O) of conventional kosmotropic anions was larger than zero, which suggested a stronger HB and more charge transfer between water and these anions. The Δδ_H2O of conventional chaotropic anions was less than zero. Despite the different solutes, the results were indifferent in both NDA and NPA solutions. Surprisingly, the Δδ_H2O of Cl^- at concentrations lower than 1 mol∙L^-1 was zero, thus becoming the benchmark between chaotropes and kosmotropes. These results suggested a quantitative measurement of kosmotropicity/chaotropicity, where the anion would be kosmotropic if its Δδ_H2O were higher than that of Cl^- and chaotropic for the opposing condition. Moreover, the results showed that the effects of the cations on the water structure were minimal, which was consistent with minimal charge transfer between the cations and water. The overall results of this study suggest that the Hofmeister ion effect is a global effect, while local interactions of ions with solutes also play a key role.     

Charge distribution in the water molecule--a comparison of methods

The charge distribution in the water molecule has been analyzed using a broad variety of basis sets, four different quantum mechanical methods (Hartree-Fock, Becke3LYP, MP2, and QCISD), and six population analysis methods (Mulliken, NPA, AIM, CHELPG, Merz-Kollman, and Resp). The influence of the molecular structure on the calculated atomic charges has been studied using small perturbations of the experimentally determined structure.     

Investigation of Substituent Effects on Proton and Carbon-13 Chemical Shifts of 4-Substituted Trans-Stilbenes

Proton and carbon-13 chemical shifts of para-substituted stilbenes have been measured. ¹H-¹H, ¹H-¹³C COSY spectra were obtained to analyze unambiguously the chemical shifts of protons and carbons. A long range coupling between 2-H and α-H was observed in a ¹H-¹H COSY spectrum. The observed chemical shifts have been correlated with Hammett substituent parameters. Among ethenyl protons and carbons, all but the chemical shifts of α-H show good correlation with both dual substituent parameters and single substituent parameters. In addition to this finding, the excellent linear correlations of C-l, and 4′-H of 4-substituted trans-stilbenes are also reported. Besides the correlations of chemical shifts with Hammett parameters, a good correlation between the chemical shifts and the calculated charges of position C-4′ are reported.     

Phosphol-3-ene 1-oxides and -sulfides. A systematic investigation via carbon-13 nuclear magnetic resonance spectroscopy

¹³C NMR chemical shifts and ¹³C? ³¹P couplings are reported for 18 phosphol-3-ene 1-oxides and 18 corresponding sulfides. The effects of methyl substitution at positions 3 and 4 on the carbon shifts have been systematically explored and substituent parameters derived. One bond couplings from phosphorus to C-2 and C-5 have been related to the sum of the exocyclic substituent group electronegativities (covalent boundary potential values).     

Multinuclear NMR and vibrational spectroscopy studies of the substituent effects in benzensulphonamide inhibitors of the enzyme carbonic anhydrase

Substituent effects on the electronic structure of sixteen biologically active benzensulphonamide derivatives were investigated by means of ¹⁵N, ¹³C, ¹H NMR, and IR spectroscopy, as well as by quantum chemical calculations. Good correlations were found between the spectroscopic data and both substituent constant and computed electronic charges. On this basis the substituent effects are interpreted in terms of electronic charge perturbation, which is linearly transmitted from the substituent to the biofunctional −SO₂NH₂ group. The resonance nature of the substituent seems most important in determining the ¹⁵N chemical shifts, which follow a “reverse” trend; i.e., electron-donor substituents induce downfield ¹⁵N shifts.     

Theoretical studies of five-membered ring ketene acetals

Cyclic ketene acetals are a class of organic molecules characterized by a nucleophilic exo-methylene carbon attached to a carbon with two adjacent O, N, or S atoms. We have carried out a systematic computational study of a series of five-membered cyclic acetals like 2-methylene-1,3-dioxolane and its OS, SS, NO, NS, and NN analogs as well as all the protonated species. The calculations were performed at the MP2 level using a triple zeta plus polarization basis set. The nucleophilicity was discussed in terms of geometrical factors, calculated atomic charges, calculated chemical shifts, and proton affinities. All the six neutral species were strong nucleophiles. The NN analog was predicted to be the strongest and the SS analog the weakest nucleophile.     

Diamagnetic contribution and substituent effects on 13C n.m.r. spectra

Correction of measured chemical shifts by subtracting the diamagnetic contributions caused by certain substituents on various carbons of a molecule leads to data that allow a reasonable interpretation of substituent effects on chemical shifts in ¹³C n.m.r. spectroscopy. It is shown that both paramagnetic and diamagnetic terms increase on all carbons of a molecule when the atomic number of a substituent increases down the same group of the periodic table. An explanation of α-, β-, and γ- effects for methyl substitution using the same procedure is attempted.     

Superelectrophilic protio methyl- and protio dimethylmethyleniminium dications

Electronic structures and energies of superelectrophilic dications derived by protonation of methyl- and dimethylmethyleniminium (R'R' 'C=N+R'R' '; R', R' ' = CH3 or H) ions were calculated at the ab initio MP2/6-311+G level. The calculations identified the N-protonated isopropyleniminium dication 14 as a minimum structure. On the basis of computed energies, deprotonation energies of the global minimum structures were also calculated. The 13C NMR chemical shifts of the intriguing dication 14 were calculated using the GIAO-MP2 method. The 13C NMR chemical shifts of the isoelectronic analogue tert-butyl cation were also calculated at the same level in order to explore the effect of an additional charge in dications 14.     

Capillary electrochromatography with monolithic stationary phases. 4. Preparation of neutral stearyl-acrylate monoliths and their evaluation in capillary electrochromatography of neutral and charged small species as well as peptides and proteins

A neutral, nonpolar monolithic capillary column having a relatively strong electroosmotic flow (EOF) yet free of electrostatic interactions with charged solutes was developed for the reversed-phase capillary electrochromatography (RP-CEC) of neutral and charged species including peptides and proteins. The neutral nonpolar monolith is based on the in situ polymerization of pentaerythritol diacrylate monostearate (PEDAS) in a ternary porogenic solvent composed of cyclohexanol, ethylene glycol, and water. PEDAS plays the role of both the cross-linker and the ligand provider, generating a macroporous nonpolar monolith having C17 chains as the chromatographic ligands. Despite the fact that the neutral PEDAS monolith is devoid of fixed charges, the monolithic capillary columns exhibited a relatively strong EOF due to the ability of PEDAS to adsorb sufficient amounts of electrolyte ions from the mobile phase. The adsorbed ions imparted the neutral PEDAS monolith the zeta potential necessary to support the EOF required for mass transport across the monolithic column. The absence of fixed charges on the surface of the neutral PEDAS monolith and in turn the adsorption sites for electrostatic attraction of charged solutes allowed the rapid and efficient separations of proteins and peptides at pH 7.0, with an average plate number of 255,000 and 121,000 plates/m, respectively. To the best of our knowledge, this constitutes the first report on the separation of proteins at neutral pH by RP-CEC using a neutral monolithic column.