Lewis acid deprotection of silyl-protected oligonucleotides and base-sensitive oligonucleotide analogues

Oligonucleotides protected with N-(trimethylsilylethoxycarbonyl) (Teoc) and P-(trimethylsilylethanol) (Tse) groups were synthesized and deprotected by a single ZnBr₂ treatment. Teoc group stabilized dA against depurination. This strategy was applied to the synthesis of base-sensitive oligonucleotide prodrugs bearing S-acetyl-2-thioethyl (Sate) phosphotriesters.     

Catalytic <Emphasis Type="Italic">N</Emphasis>-Alkylation of Amines with Primary Alcohols over Halide Clusters

Piperidine was reacted with methanol under a hydrogen stream in the presence of (H₃O)₂[(W₆Cl₈)Cl₆]·6H₂O supported on silica gel. When the temperature was raised above 200 °C, the catalytic activity of the cluster appeared. Piperidine N-methylation proceeded yielding N-methylpiperidine in 95% selectivity at 350 °C. The corresponding halide clusters of niobium, molybdenum, and tantalum supported on silica gel also catalyzed the reaction. Primary alcohols such as ethanol and 1-propanol produced the corresponding N-alkyl products of piperidine; however, secondary and tertiary alcohols did not. Selective N-methylation of pyrrolidine, hexamethyleneimine, butylamine, and aniline also proceeded. Thus, the clusters catalyzed alkylation of aliphatic, alicyclic, and aromatic amines with primary alcohols. A Brønsted acid site attributable to a hydroxo ligand, which is formed on the cluster complex by thermal activation, is proposed as the active site of the catalyst.     

Spectroscopic and theoretical studies of N-trichlorophosphazotrifluoroacetyl,CF3C(O)NPCl3 and N-trichlorophosphazotrichloroacetyl,CCl3C(O)NPCl3

FTIR, Raman and NMR spectra of N-trichlorophosphazotrifluoroacetyl, CF₃C(O)NPCl₃ (1) and N-trichlorophosphazotrichloroacetyl, CCl₃C(O)NPCl₃ (2) were obtained. The experimental data are compared with results of ab initio and density functional theory (DFT) calculations. According the theoretical studies the main conformer for both molecules possesses C_s symmetry (CO bond syn respect to the NP bond). The preference of the syn conformation has been rationalized based on the natural bond orbital formalism. The vibrational spectra of 1 in the liquid phase and 2 in the solid phase are in good agreement with theoretical results.     

Silicon-containing dimethylphosphoric acid amides

α-Silylmethylamines MeNHCH₂SiMen(OMe)_3?n (n=0, 2) were involved into Todd-Atherton reaction with (MeO)₂P(O)H giving N-methyl-N-trimethoxysilylmethyl-and N-methyl-N-dimethyl-(methoxy)silylmethylamides of dimethylphosphoric acid. A reaction of these compounds with BF₃·Et₂O led to the formation of the corresponding N-methyl-N-trifluoro-and N-methyl-N-(dimethyl)fluorosilylmethylamides of dimethylphosphoric acid. (MeO)₂P(O)N(Me)CH₂SiF₃ existed as an (O-Si)-chelate with a pentacoordinate silicon due to the occurrence of a rare and unstudied intramolecular coordinating interaction P=O → Si.     

About the different reactivity of dinuclear palladium and platinum compounds with trispyrrolylphosphine: Synthesis and X-ray crystallographic results of new palladium complexes containing P-pyrrolyl bonds

The reaction of [Pt(μ-Cl)(κ,η²-COE-MeO)]₂ (2) (COE-MeO = 2-methoxy-5-cycloocten-1-yl) with trispyrrolylphosphine yields [PtCl{P(pyrl)₃}(κ,η²-COE-MeO)] (3), in contrast to the crown-cycle complex [Pd(μ-Cl) {P(pyrl)₃}]₈ (1) obtained with the analogous palladium complex. The different reactivity has been explained in terms of the higher lability of the carbon-carbon double bond in the starting palladium compound, as compared with the related platinum derivative. The reaction of 1 with the ligand 2-[(pyridin-2-ylmethylene)aminophenol], (HNN′O), in the presence of thalium salt and NEt₃, yields the complex [Pd(κ³N,N′,O-py-CHN-C₆H₄O)(P(O)(pyrl)₂)] (5), which contains, for the first time, a di(N-pyrrolyl)phosphonato-P ligand. Treatment of [PdCl(κ³N,N′,O-py-CHN-C₆H₄O)] with P(pyrl)₃ gives the amido derivative [PdCl{κ³P,N,N-(P(pyrl)₂-O-C₆H₄-N-CH(CH₂-CO-CH₃)-py)}] (7), which displays a N-Pd-P-O-C₂ six-membered metallacycle. In addition, the latter compound has been able to insert an acetone molecule into its framework. The crystal structures of 5 and 7 were solved by X-ray diffraction analysis.     

Natural bond orbital analysis and density functional study of linear and bent oxo-bridged dimers of rhenium(V)

The calculations using the density functional theory (DFT) method were done on two diamagnetic oxo-bridged dinuclear rhenium complexes: [{Re(O)Br₂(3,5-Me₂pzH)₂}₂(μ-O)] (1) with a linear ORe–O–ReO core and [{Re(O)Br(3,5-Me₂pzH)}₂(μ-O)(μ-3,5-Me₂pz)₂] (2) with a bent Re₂O₃ unit (pzHmonodentate N-pyrazole and pzbidentate N,N′-pyrazole ligand). The optimized geometries of 1 and 2 agree with the X-ray structures. The MO sequence is almost the same for 1 with a linear ORe–O–ReO core and 2 with a bent Re₂O₃ unit. The bending of Re₂O₃ unit in 2 is a consequence of steric congestion introduced by two coordinated 3,5-dimethylopyrazole bridging ligands. Additional information about binding in the complexes 1 and 2 was obtained by NBO analysis.     

U(IV)/LN(III) unexpected mixed site in polymetallic oxalato complexes. Part II. Substitution of U(IV) for Ln(III) in the new oxalates (N2H5)Ln(C2O4)2·nH2O (Ln=Nd, Gd)

Two new hydrazinium lanthanide(III) oxalates, (N₂H₅)[Nd(C₂O₄)₂(H₂O)]·4H₂O (1) and (N₂H₅)[Gd(C₂O₄)₂(H₂O)]·4.5H₂O (2) have been prepared and their crystal structures determined by single-crystal X-ray diffraction. The crystal structures were solved by the direct methods and Fourier difference techniques, and refined by a least-squares method on the basis of F² for all unique reflections. Crystallographic data: 1, triclinic, space group , , b=9.762(4), , α=62.378(5), β=76.681(5), γ=73.858(5), Z=2, R₁=0.0335 for 172 parameters with 3430 reflections with I?2σ(I); 2, triclinic, space group , , b=9.51(3), , α=62.11(4), β=76.15(5), γ=73.73(5), Z=2, R₁=0.0325 for 172 parameters with 1742 reflections with I?2σ(I). The two isotypic structures are built from a three-dimensional (3D) arrangement of lanthanide and oxalate ions. The lanthanide atom is coordinated by eight oxygen atoms from four tetradentate oxalate ions and one aqua oxygen. Alternating lanthanide and oxalate ions form six-membered rings that delimit tunnels running down three directions and occupied by hydrazinium and water molecules. Starting from these lanthanide(III) compounds two isotypic mixed Ln(III)/U(IV) oxalates, (N₂H₅)_0.75[Nd_0.75U_0.25(C₂O₄)₂(H₂O)]·4.5H₂O (3) and (N₂H₅)_0.75[Gd_0.75U_0.25(C₂O₄)₂(H₂O)]·4H₂O (4), are obtained by partial substitution of Ln(III) by U(IV) in the nine-coordinated site, the charge excess being compensated by removal of monovalent ions from the tunnels. Finally, using Na⁺ gel, two mixed Ln(III)/U(IV) sodium oxalates, Na_0.5[Nd_0.5U_0.5(C₂O₄)₂(H₂O)]·3H₂O (5) and Na_0.65[Gd_0.65U_0.35(C₂O₄)₂(H₂O)]·4.5H₂O (6) have been obtained without any change in the 3D framework.     

Synthesis and characterization of some novel cadmium(II) complexes with 3-hydroxypicolinic acid (3-OHpicH): Crystal and molecular structures of [CdI(3-OHpic)(3-OHpicH)(H2O)]2, [Cd(3-OHpic)2(H2O)2] and [Cd(3-OHpic)2]n

Cadmium(II) complexes of 3-hydroxypicolinic acid, namely [CdI(3-OHpic)(3-OHpicH)(H₂O)]₂ (1), [Cd(3-OHpic)₂(H₂O)₂] (2) and [Cd(3-OHpic)₂]_n (3) were prepared and characterized by spectroscopic methods (IR, NMR) and their molecular and crystal structures were determined by X-ray crystal structure analysis. Complexes 1 and 2 were prepared in similar reaction conditions using different cadmium(II) salts: cadmium(II) iodide and cadmium(II) acetate dihydrate, respectively, while 3 was prepared by recrystallization of 2 from N,N-dimethylformamide solution. Various coordination modes of 3-OHpicH in 1–3 were established in the solid state: bidentate N,O-chelated mode in 1 and 2, monodentate mode through the carboxylate O atom from zwitterionic ligand in 1 and bidentate N,O-chelated and bridging mode in 3. In the DMF solution of all prepared complexes, only monodentate mode of 3-OHpicH binding to cadmium(II) through the carboxylate O atom was established by ¹H, ¹³C, ¹⁵N and ¹¹³Cd NMR spectroscopy.     

Photocatalytic deoxygenation of N–O bonds with rhenium complexes: from the reduction of nitrous oxide to pyridine N-oxides

The accumulation of nitrogen oxides in the environment calls for new pathways to interconvert the various oxidation states of nitrogen, and especially their reduction. However, the large spectrum of reduction potentials covered by nitrogen oxides makes it difficult to find general systems capable of efficiently reducing various N-oxides. Here, photocatalysis unlocks high energy species able both to circumvent the inherent low reactivity of the greenhouse gas and oxidant N₂O (E⁰(N₂O/N₂) = +1.77 V vs. SHE), and to reduce pyridine N-oxides (E_1/2(pyridine N-oxide/pyridine) = −1.04 V vs. SHE). The rhenium complex [Re(4,4′-tBu-bpy)(CO)₃Cl] proved to be efficient in performing both reactions under ambient conditions, enabling the deoxygenation of N₂O as well as synthetically relevant and functionalized pyridine N-oxides.

A rhenium-based photocatalyst enables the deoxygenation of several compounds containing N–O bonds, such as N₂O and pyridine N-oxides.     

Reaction of transsilylation of <Emphasis Type="Italic">N</Emphasis>-methyl-<Emphasis Type="Italic">N</Emphasis>-trimethylsilylacetamide with silanes ClCH<Subscript>2</Subscript>SiR<Superscript>1</Superscript>R<Superscript>2</Superscript>Cl

The reaction of N-methyl-N-trimethylsilylacetamide with silanes ClCH₂SiR¹R²Cl (R¹, R² = H, Me; H, Ph; Ph₂) leads to the formation of (O→Si) chelate compounds with pentacoordinate silicon: N-[chloro(methyl)-silyl]methyl-, N-[chloro(phenyl)silyl]methyl-, and N-[chloro(diphenyl)silyl]methyl-N-methylacetamides. From the data of multinuclear NMR spectroscopy, the intermediates of the reaction of N-methyl-N-trimethylsilylacetamide with ClCH₂SiPhHCl and ClCH₂SiPh²Cl are stable in CDCl₃ solution at room temperature during several days and slowly rearrange to the final (O–Si) chelate compounds.     

Isolation and biological evaluation of chromone alkaloid dysoline,a new regioisomer of rohitukine from Dysoxylum binectariferum

The chromone alkaloid dysoline (1), a new regioisomer of rohitukine (2) along with rohitukine and rohitukine-N-oxide (3) were isolated from the stem barks of Dysoxylum binectariferum. The structure of dysoline (1) was determined by extensive 2D-NMR studies and the absolute configuration was established by NOESY and CD spectra. Dysoline (1) consisted of a 5,7-dihydroxy-2-methylchromone nucleus substituted with a 2′-hydroxylated N-Me piperidine ring at the C-6 position. Dysoline differs from rohitukine by the position of the piperidine ring on the chromone nucleus. Dysoline displayed promising cytotoxicity in HT1080 fibrosarcoma cells with an IC₅₀ of 0.21 μM, and also displayed significant inhibition of proinflammatory cytokines TNF-α and IL-6.     

Induction of strand breaks in DNA films by low energy electrons and soft X-ray under nitrous oxide atmosphere

Five-monolayer (5 ML) plasmid DNA films deposited on glass and tantalum substrates were exposed to Al K_α X-rays of 1.5 keV under gaseous nitrous oxide (N₂O) at atmospheric pressure and temperature. Whereas the damage yields for DNA deposited on glass are due to soft X-rays, those arising from DNA on tantalum are due to both the interaction of low energy photoelectrons from the metal and X-rays. Then, the differences in the yields of damage on glass and tantalum substrates, essentially arises from interaction of essentially low-energy electrons (LEEs) with DNA molecules and the surrounding atmosphere. The G-values (i.e., the number of moles of product per Joule of energy absorbed) for DNA strand breaks induced by LEEs (G_LEE) and the lower limit of G-values for soft X-ray photons (G_XL) were calculated and the results compared to those from previous studies under atmospheric conditions and other ambient gases, such as N₂ and O₂. Under N₂O, the G-values for loss of supercoiled DNA are 103±15 nmol/J for X-rays, and 737±110 nmol/J for LEEs. Compared to corresponding values in an O₂ atmosphere, the effectiveness of X-rays to damage DNA in N₂O is less, but the G value for LEEs in N₂O is more than twice the corresponding value for an oxygenated environment. This result indicates a higher effectiveness for LEEs relative to N₂ and O₂ environments in causing SSB and DSB in an N₂O environment. Thus, the previously observed radiosensitization of cells by N₂O may not be only due to OH radicals but also to the reaction of LEE with N₂O molecules near DNA. The previous experiments with N₂ and O₂ and the present one demonstrate the possibility to investigate damage induced by LEEs to biomolecules under various types of surrounding atmospheres.     

Generation of methylene by the liquid phase oxidation of isobutene with nitrous oxide

The application of nitrous oxide as an alternative oxidant provides new opportunities for selective oxidation of olefins. Here, we studied for the first time the thermal oxidation of isobutene with N₂O in the liquid phase. The study revealed that the oxidation proceeds via 1,3-dipolar cycloaddition of N₂O to the CC bond by two routes forming unstable 4,5-dihydro-[1,2,3]-oxadiazole intermediates. The main route (the contribution of 91%) includes the addition of the N₂O oxygen to the second carbon atom in olefin. In this case, the oxadiazole decomposes with the CC bond cleavage yielding acetone, methylene (:CH₂), and N₂. The methylene then readily reacts with isobutene and benzene (solvent). The minor route involves the addition of the N₂O oxygen to the first carbon atom and the oxadiazole decomposition with a hydrogen shift leading to isobutanal and N₂.The main distinctive feature of the studied reaction is the formation of methylene in high yield.     

Silver-halide/organic-composite structures: Toward materials with multiple photographic functionalities

We report the synthesis and structure of the novel silver-halide-based organic-inorganic hybrids Ag₂Br₆(PPD)₂, Ag₂Br₆(CD-2)₂·H₂O, Ag₂Br₄(TMBD), and Ag₂I₆(CD-2)₂·H₂O. 1,4-phenylenediammonium hexabromodiargentate(I) [Ag₂Br₆(PPD)₂] crystals are monoclinic (P2₁/n), with unit-cell dimensions, , , and β=93.109(1)°. N,N-diethyl-2-methyl-1,4-benzenediammonium hexabromodiargentate(I) monohydrate [Ag₂Br₆(CD-2)₂·H₂O] crystals are monoclinic (space group P2₁/c) with , , , and β=96.153(1)°. N,N,N′,N′-tetramethyl-1,4-benzenediammonium tetrabromodiargentate(I) [Ag₂Br₄(TMBD)] crystals are orthorhombic (space group Pbcn) with , , and . N,N-diethyl-2-methyl-1,4-benzenediammonium hexaiododiargentate(I) monohydrate, [Ag₂I₆(CD-2)₂·H₂O], are monoclinic (C2/c), with unit-cell dimensions, , , , and β=98.657(1)°. The novel structures are members of a class of silver-halide-based organic-inorganic hybrids based upon the assembly of [Ag_aX_b]ⁿ⁻ clusters and protonated organoamines in aqueous mineral acids. The clusters display short intracluster Ag-Ag distances, and computational methods are used to evaluate intracluster Ag-Ag bonding. The diverse stoichiometries and cluster connectivities observed suggest a rich compositional and structural chemistry based upon the general assembly method. We have extended the methodology to include a silver-halide-organoamonium chemistry in which the organic moiety is chosen to serve a specific photographic function and demonstrate the first examples of such materials. The methodology allows for the direct assembly of [Ag_aX_b]ⁿ⁻ clusters with commercial photographic color developer molecules, and we show that development is repressed but can later be “switched on” in a unique photographic scheme. The photographic properties of Ag₂Br₆(PPD)₂ are examined and show an extremely facile development rate owing to the fact that the developer molecules are within molecular proximity to the clusters. As a result of their molecular nature, we anticipate that such materials could enable conventional or completely new imaging technologies with very fast image access rates and very high resolution.     

First MnIII complexes with tetradentate (N2O2) Schiff bases and tricyanomethanide: synthesis,crystal structure,and magnetic properties

The first Mn^III complexes with Schiff bases and tricyanomethanide-anion were synthesized: [Mn(salen)C(CN)₃(H₂O)] (1), [Mn(5-Brsalen)C(CN)₃(H₂O)] (2), [Mn(salpn)C(CN)₃(H₂O)] (3), [Mn(3-MeOsalen)C(CN)₃(H₂O)] (4), [Mn(5-Brsalen)(MeOH)(H₂O)][C(CN)₃] (5), and [Mn(3-MeOsalpn)(H₂O)₂][C(CN)₃] (6), where SalenH₂ is N,N′-bis(salicylidene)ethylenediamine, 5-BrsalenH₂ is N,N′-bis(5-bromosalicylidene)ethylenediamine, SalpnH₂ is N,N′-bis-(salicylidene)-1,3-diaminopropane, 3-MeOsalenH₂ is N,N′-bis(3-methoxysalicylidene)-ethylenediamine, 3-MeOsalpnH₂ — N,N′-bis(3-methoxysalicylidene)-1,3-diaminopropane. The tricyanomethanide anion in complexes 1–4 acts as a the terminal ligand, whereas in complexes 5 and 6 tricyanomethanide is not coordinated by Mn^III and acts as an out-of-sphere counterion. The structures of complexes 1–4 are characterized by the formation of dimers due to hydrogen bonds between the water molecules and oxygen atoms of the Schiff bases. The Mn...Mn distances inside the dimers are 4.69–5.41 Å. Complex 6 has a zigzag chain structure consisting of the [Mn(3-MeOsalpn)(H₂O)₂]⁺ cations bound by double bridging aqua ligands. The study of the magnetic properties of complexes 1, 3, 4, and 6 showed the existence of antiferromagnetic interactions between the Mn^III ions through the system of hydrogen bonds.     

Synthesis, characterization and structure determination of two isotypes of a layered aluminophosphate with a new 2D network topology

Two isotypes of a new layered aluminophosphate, further denoted MDAP-3 and MDAE-1, have been synthesized under hydrothermal conditions using N-methyl-1,3-propanediamine and N-methyl-ethylenediamine, respectively. MDAP-3, with the empirical formula [Al₂(HPO₄)(PO₄)₂](C₄N₂H₁₄)(H₂O), crystallizes in the orthorhombic space group Pna2(1) (No. 33) with , , , Z=4, R₁=0.0498 and wR₂=0.1217. The second solid, MDAE-1, with the empirical formula [Al₂(HPO₄)(PO₄)₂](C₃N₂H₁₂)(H₂O), crystallizes in the same space group with , , , Z=4, R₁=0.0407 and wR₂=0.0954. The two compounds possess the same layer topology. Inorganic layers contain PO₃=O, PO₃OH, AlO₄ and AlO₆ polyhedra, linked together to generate a new 4×8 net. MDAP-3 and MDAE-1 represent the first examples of two-dimensional layered aluminophosphates with the Al₂P₃O₁₂ stoichiometry, and containing AlO₆ octahedra.