Identification of hydrogen bond modes in polarized Raman spectra of single crystals of α‐oxalic acid dihydrate

Polarized Raman spectra of single crystals of the α‐polymorphs of protonated and deuterated oxalic acid dihydrate were recorded. The interpretation of the spectra is assisted by periodic DFT calculations using the CRYSTAL06 program and by comparison with the infrared spectra of the polycrystalline material. The agreement between the calculated and observed band wavenumbers is fair in the case of low‐anharmonicity modes, but marked differences appear for the stretching modes that are strongly anharmonic. A very broad feature, extending between ∼2000 and 1200 cm⁻¹, is attributed to OH stretching. Notable is the topping of this feature by distinct bands that can be attributed to CO stretching, H₂O scissoring and COH bending coupled to C O stretching. The assignments are supported by isotope effects. However, deuteration does not notably affect the wavenumber limits of the broad OH stretching band, which suggests that the potential governing the proton dynamics is of the asymmetric double‐minimum type with a very low barrier. The calculated normal coordinates show a strong participation of the bending modes of water molecules in almost all internal acid motions, as well as in the external phonons. Copyright © 2009 John Wiley & Sons, Ltd.     

冰水-溶液-炸药分子中耦合氢键的受激协同弛豫

与传统定义的氢键(X×××H)相比, 耦合氢键(X:H-Y)集成分子间的X:H非键和分子内的H-Y成键作用(X = N, O; Y = X, C;而且H也可以被电负性较低的金属如Cu取代). 耦合氢键具有两个显著的特征: 一是它的分段长度、能量、和振动频率的协同性, 二是其分段德拜比热的差异, 其关键在于它的两端负电载体间的排斥耦合和极化作用. 耦合氢键分段的德拜比热对温度的积分对应它们各自的结合能而德拜温度对应于振动频率. 因此,我们可以通过施加外场（温度,压强、配位,电场,等）调制耦合氢键的极化和协同弛豫以改变氢键网络结构和氢键体系的物理性能. 但是,耦合氢键的协同弛豫只有在Y—X排斥足够强和H-Y电负性差足够大的条件下发生. 耦合氢键的建立使我们不仅能够定量破解关于水的结构和冰水的诸多反常物性,而且加深了对酸碱盐和有机溶液的氢键网络和属性以及氮基炸药的结构稳定性和储能机理等的系统认知. 氢键耦合振子对的极化和协同弛豫为分子电子学提供了一个新的自由度以完整表述分子、电子、键合在时、空、能量域的受激行为. 所以, 由单分子基元动力学向耦合氢键和电子弛豫动力学的思维拓展,无论是对原子分子电子学的基础研究还是对实际工程应用都具有深远的意义.     

Spectroscopic manifestations of the intramolecular hydrogen bond in ordinary and sterically hindered porphyrins

Spectroscopic manifestations of the intramolecular hydrogen bond (IHB) in ordinary and sterically hindered porphyrins were investigated by the methods of IR spectroscopy and molecular modeling. It is shown that the IHB plays a part in the formation of the νNH and γNH vibrations of porphyrins. By changing the type and value of the distortion of the macroring at the expense of steric effects of interaction of volumetric substituents, the parameters and spectroscopic manifestations of the IHB can be varied in a significantly larger range as compared with ordinary tetrapyrroles having nearly quadratic and planar macrorings. Reported at the VIIIth International Conference on Spectroscopy of Porphyrins and Their Analogs, Minsk, September 22–26, 1998. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 66, No. 4, pp. 522–527, July–August, 1999.     

Excited‐state hydrogen bonding dynamics of pyruvic acid and geminal‐diol, 2,2‐dihydroxypropanoic acid in aqueous solution: a DFT/TDDFT study

In this work, we present the optimized ground state geometrical structures, electronic excitation energies and corresponding oscillation strengths of the low‐lying electronically excited states for the isolated Tce‐CH3COCOOH and Tce‐CH3C(OH)2COOH as well as their corresponding hydrogen‐bonded dimers Tce‐CH3COCOOH‐H2O and Tce‐CH3C(OH)2COOH‐H2O through time‐dependent density functional theory method. It is found that the intermolecular hydrogen bonds C=O···H‐O are strengthened in the electronically excited states of the hydrogen‐bonded dimers Tce‐CH3COCOOH‐H2O and Tce‐CH3C(OH)2COOH‐H2O, in that the excitation energies of the related excited states for the hydrogen‐bonded dimers are decreased compared with those of the corresponding monomers. The calculated results are consistent with the rules that are first demonstrated by Zhao on the excited‐state hydrogen bonding dynamics. Copyright © 2012 John Wiley & Sons, Ltd.     

Hydrogen bonding in oxalic acid and its complexes: A database study of neutron structures

The basic result of carboxylic group that the oxygen atom of the -OH never seems to be a hydrogen bond acceptor is violated in the cases, namely urea oxalic acid and bis urea oxalic acid complexes, where the hydroxyl oxygen atom is an acceptor of a weak N—H… O hydrogen bond. The parameters of this hydrogen bond, respectively in these structures are: hydrogen acceptor distance 2.110 Å and 2.127 Å and the bending angle at hydrogen, 165.6° and 165.8°. The bond strength around the hydroxyl oxygen is close to 1.91 valence units, indicating that it has hardly any strength left to form hydrogen bonds. These two structures being highly planar, force the formation of this hydrogen bond. As oxalic acid is the common moiety, the structures of the two polymorphs, α-oxalic acid and β-oxalic acid, also were looked into in terms of hydrogen bonding and packing.     

Difference between 1H NMR signals of primary amide protons as a simple spectral index of the amide intramolecular hydrogen bond strength

The effect of the intramolecular H‐bonding of the primary amide group on the spectral properties and reactivity of this group towards electrophiles has been studied in systematic rows of 1,2,5,6,7,8‐hexahydro‐7,7‐dimethyl‐2,5‐dioxo‐1‐R‐quinoline‐3‐carboxamides and 2‐aryliminocoumarin‐3‐carboxamides using ¹H and ¹⁵N NMR spectroscopy and the kinetics of model reactions. The upfield signal of the amide proton that is not intramolecularly H‐bonded (H^a) depends on external factors such as solvent nature and concentration. At the same time, the downfield chemical shift of the H^b proton (bonded by the intramolecular hydrogen bond) depends mostly on the strength of the intramolecular H‐bond, which is affected by such internal factor as electron nature of substituent R. The substituent's influence on the H^b proton's chemical shift is more effective in deuterochloroform medium than in DMSO‐d₆ where the intramolecular hydrogen bond is less stable. The value Δδ(H) = δ(H^b) ? δ(H^a) is suggested as a simple comparative spectral index of the intramolecular hydrogen bond strength in these and similar compounds. By contrast, the effect of R on the ¹⁵N NMR chemical shift of the amide nitrogen has turned out to be too small to estimate changes of the electron density at the nitrogen. The effect of the intramolecular H‐bond on the reactivity of the amide group is twofold. When the cleavage of the H‐bond occurs on the rate limiting step it dramatically reduces the reaction rate. In the other case, the strengthening of the H‐bond favors the reaction rate because of the increase of the electron density at the amide nitrogen. Copyright © 2011 John Wiley & Sons, Ltd.     

Intramolecular hydrogen bond and structure of stereoisomericα,β-dihydroxypiperidinecarbonitriles

The intramolecular hydrogen bond in stereoisomeric 1-alkyl-3,4-dihydroxy-3-methyl-6e-arylpiperidine-4-carbonitriles has been investigated by IR spectroscopy. The obtained spectral characteristics of the stereoisomers can be used for their structural identification. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 65, No. 2, pp. 287–289, March–April, 1998.     

Effect of aqueous solvation on the structures of pyruvic acid isomers and their reactions in solution: a computational study

The pyruvic acid molecule and its various isomers have been studied in aqueous solution in order to understand the mechanism of decarboxylation. The tautomeric equilibrium remains in favor of the keto form in aqueous solution, but the energy difference between the two tautomers decreases. The anion also exists in the keto form in aqueous solution. Good agreement between the calculated and observed gas phase protonation and basicity values is obtained, and the calculated pK_a value is also in reasonable agreement with the literature value. The importance of the catalytic mechanism may be gauged from the fact that, in the absence of an enzymatic pathway, the reaction has high activation barrier and may not occur at all. Copyright © 2007 John Wiley & Sons, Ltd.     

Prediction models for the Abraham hydrogen bond donor strength: comparison of semi‐empirical,ab initio,and DFT methods

Hydrogen bonding has a great impact on the partitioning of organic compounds in biological and environmental systems as well as on the shape and functionality of macromolecules. Electronic characteristics of single molecules, localized at the H‐bond (HB) donor site, are able to estimate the donor strength in terms of the Abraham parameter A. The quantum chemically calculated properties encode electrostatic, polarizability, and charge‐transfer contributions to hydrogen bonding. A recently introduced respective approach is extended to amides with more than one H atom per donor site, and adapted to the semi‐empirical AM1 scheme. For 451 organic compounds covering acidic ? CH, ? NH? , and ? OH groups, the squared correlation coefficient is 0.95 for the Hartree–Fock and density functional theory (B3LYP) level of calculation, and 0.84 with AM1. The discussion includes separate analyses for weak, moderate, and strong HB donors, a comparison with the performance of increment methods, and opportunities for consensus modeling through the combined use of increment and quantum chemical methods. Copyright © 2011 John Wiley & Sons, Ltd.     

A multinuclear magnetic resonance study of intramolecular hydrogen bonding in some Schiff and Schiff-Mannich bases in solution and in the solid state

Two Schiff bases; N, N′-bis(5-bromosalicylidene)-1,2-diaminoethane, BS, and 7-[(1-{5-bromo-2-hydroxyphenyl} methylidene)amino]-4-methylcoumarin, Sc, and two appropriate Schiff–Mannich bases, N, N′-bis{5-bromo-3-[(diethylamino)methyl]salicylidene}-1,2-diaminoethane, BSM, and 7-[(1-{5-bromo-3-[(diethylamino)methyl]-2-hydroxyphenyl} methylidene)amino]-4-methylcoumarin, SMc, capable of intramolecular hydrogen bonding have been investigated by multinuclear magnetic resonance methods in both solid and liquid phases. In all of the compounds under investigation tautomeric equilibrium involving an intramolecular hydrogen bond has been found. The Schiff–Mannich bases, which can form two different kinds of H bonds at room temperature, form relatively weak H bonds with the imino nitrogen atoms. At low temperatures the tautomeric proton exchange becomes slow on the NMR time scale and both hydrogen-bonded forms can be observed by ¹H, ¹³C, and ¹⁵N NMR methods. In the solid state the tautomeric process is frozen and only one H-bonded form is present. On the basis of 13C and ¹⁵N CPMAS NMR spectra this is identified as the form with hydrogen bonds involving the imino groups. This conclusion is in good agreement with previous results obtained by X-ray diffraction methods.

The investigated Schiff bases (BS and Sc) form relatively weak H bonds. The proton position in the hydrogen bridge, estimated from ¹⁵N and ¹³C chemical shifts, is very similar in both the solution and solid phases. In chloroform solution the observed tautomeric equilibria are almost insensitive to a temperature change within the range 223 to 303 K.     

HNO二聚体蓝移氢键的理论研究

利用分子轨道从头算理论和密度泛函理论结合不同理论基组对于N-H…O蓝移氢键进行了详细的研究.利用标准方法和均衡校正方法对二聚体进行了几何优化,振动频率和相互作用能的计算.拓扑学和自然键轨道理论对于蓝移氢键的本质进行分析.自然键轨道(NBO)分析表明,σ*(N-H)轨道上电子密度降低是电子密度重排效应的结果.分子内电子重排、轨道再杂化和电子受体内部结构重组共同作用结果导致了N-H的振动频率大幅蓝移现象的出现.     

HOX(X=F,Cl)二聚体红移氢键的理论研究

用理论方法研究了二聚体HOX(X=F,Cl)分子间氢键,在B3LYP/6-31+G(d,p)、 B3LYP/6-311++G(d,p)、MP2/6-31+G(d,p)和MP2/6-311++G(d,p)水平上,利用标准方法和均衡校正方法对二聚体进行了几何优化、振动频率和相互作用能的计算。同时,利用电子密度拓扑分析和自然键轨道分析对红移氢键的本质进行了分析。研究表明：分子间O—H…O和O—H…X(X=F,Cl)氢键的形成使二聚体中O—H键伸长,伸缩振动频率减小,形成红移氢键。NBO分析表明,电荷转移效应占优势,因此形成O—H…O和O—H…X(F,Cl)红移氢键。     

Excited‐state hydrogen bond strengthening of coumarin 153 in ethanol solvent: a TDDFT study

So far, coumarin dyes have been extensively studied with various means to understand their photophysical behaviors and photochemical properties. Here, our performing time‐dependent density functional theory calculation is aimed at exploring the excited‐state hydrogen bonding dynamics of coumarin 153 (C153) in protic ethanol (EtOH) solvent. The calculated results suggest that the excited‐state hydrogen bond C?O?H?O between C?O group and O?H group in the C153‐EtOH complex is strengthened, and the S₀ → S₁ transition of the complex corresponds to the highest occupied molecular orbital (HOMO) hopping to the lowest unoccupied molecular orbital (LUMO). The excited‐state hydrogen bond strengthening has been further confirmed by its larger binding energy in the S₁ state than in the S₀ state. In addition, because of the formation of the hydrogen bond C?O?H?O, a red shift of about 7 nm occurs in the electronic spectra of the C153‐EtOH complex, which is in good accordance with the experiment result. Copyright © 2016 John Wiley & Sons, Ltd.     

A detailed DFT/TDDFT study on excited‐state intramolecular hydrogen bonding dynamics and proton‐transfer mechanism of 2‐phenanthro[9,10‐d]oxazol‐2‐yl‐phenol

In this present work, using density functional theory and time‐dependent density functional theory methods, we theoretically study the excited‐state hydrogen bonding dynamics and the excited state intramolecular proton transfer mechanism of a new 2‐phenanthro[9,10‐d]oxazol‐2‐yl‐phenol (2PYP) system. Via exploring the reduced density gradient versus sign(λ₂(r))ρ(r), we affirm that the intramolecular hydrogen bond O1‐H2?N3 is formed in the ground state. Based on photoexcitation, comparing bond lengths, bond angles, and infrared vibrational spectra involved in hydrogen bond, we confirm that the hydrogen bond O1‐H2?N3 of 2PYP should be strengthened in the S₁ state. Analyses about frontier molecular orbitals prove that charge redistribution of 2PYP facilitates excited state intramolecular proton transfer process. Via constructing potential energy curves and searching transition state structure, we clarify the excited state intramolecular proton transfer mechanism of 2PYP in detail, which may make contributions for the applications of such kinds of system in future.     

Synthesis,molecular structure,IR and Raman spectra as well as DFT chemical calculations for alkylamides of thiocyanoacetic acid

This paper reports on room‐temperature infrared (IR) and Raman studies and vibrational characteristics of amide and thiocyano groups of R‐NH‐CO‐CH₂‐SCN n‐alkylamides of thiocyanoacetic acid (R = C₈H₁₇, C₉H₁₉, C₁₂H₂₅ and C₁₄H₂₉). Their molecular structure has been proposed on the basis of optimization process. The experimental wavenumbers have been compared to those obtained from discrete Fourier transform (DFT) quantum chemical calculations performed with the use of B3LYP/6–31G(d,p) approximation. The role of the hydrogen bonds in the stabilization of the structure has been analyzed. It was found that the hydrogen bonding and strong dynamic interactions between the unit cell components are responsible for the deviation of several theoretical wavenumbers from the experimental ones. Copyright © 2009 John Wiley & Sons, Ltd.     

Investigation of inter-molecular hydrogen bonding in the binary mixture (acetone + water) by concentration dependent Raman study and ab initio calculations

This paper reports that vibrational spectroscopic analysis on hydrogen-bonding between acetone and water comprises both experimental Raman spectra and ab initio calculations on structures of various acetone/water complexes with changing water concentrations. The optimised geometries and wavenumbers of the neat acetone molecule and its complexes are calculated by using ab initio method at the MP2 level with 6-311+G(d,p) basis set. Changes in wavenumber position and linewidth (fullwidth at half maximum) have been explained for neat as well as binary mixtures with different mole fractions of the reference system, acetone, in terms of intermolecular hydrogen bonding. The combination of experimental Raman data with ab initio calculation leads to a better knowledge of the concentration dependent changes in the spectral features in terms of hydrogen bonding.     

FT‐Raman,FT‐IR spectra and DFT calculations on monomeric and dimeric structures of 5‐fluoro‐ and 5‐chloro‐salicylic acid

The experimental and theoretical study on the structures and vibrations of 5‐fluoro‐salicylic acid and 5‐chloro‐salicylic acid (5‐FSA and 5‐ClSA, C₇H₅FO₃ and C₇H₅ClO₃) is presented. The Fourier transform infrared spectra (4000–400 cm⁻¹) and the Fourier transform Raman spectra (4000–50 cm⁻¹) of the title molecules in the solid phase were recorded. The molecular structures, vibrational wavenumbers, infrared intensities, Raman intensities and Raman scattering activities were calculated for a pair of molecules linked by the intermolecular O H···O hydrogen bond. The geometrical parameters and energies of 5‐FSA and 5ClSA were obtained for all eight conformers/isomers from density functional theory (DFT) (B3LYP) with 6‐311++G(d,p) basis set calculations. The computational results identified the most stable conformer of 5‐FSA and 5‐ClSA as the C1 form. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The spectroscopic and theoretical results were compared with the corresponding properties for 5‐FSA and 5‐ClSA monomers and dimer of C1 conformer. The optimized bond lengths, bond angles and calculated wavenumbers showed the best agreement with the experimental results. Copyright © 2010 John Wiley & Sons, Ltd.     

Changes of electron density in the OHN hydrogen bond upon proton transfer in complexes of phenols with trimethylamine: DFT study

The intermolecular hydrogen bonds in phenol–trimethylamine complexes were investigated by Bader Atom in Molecules (AIM) theory. The AIM parameters of the bond critical points (BCPs) of the O···H, N···H, and CO bonds as well as those of the phenol ring critical point (RCP) were analyzed as functions of the proton‐transfer degree. Transfer of the proton from donor to acceptor changes not only the electron density of the hydrogen bridge, but also the electron cloud in the proton donor. The differences between the proton donors in relation to their pK_a values are seen in the systematic changes of the AIM parameters. Copyright © 2008 John Wiley & Sons, Ltd.     

The 15N and 13C solid state NMR study of intramolecular hydrogen bond in some Schiff's bases

A series of 11 Schiff's bases derived from substituted salicylaldehyde and aliphatic amines has been studied in the solid state by ¹⁵N and ¹³C cross-polarization magic angle spinning (CPMAS) nuclear magnetic resonance (NMR). ¹⁵N CPMAS is especially useful for investigation of the tautomerism in the compounds considered, owing to the large difference in the nitrogen chemical shifts of OH and NH tautomers. In the solid state, three of the compounds examined were shown by ¹⁵N NMR to exist as OH tautomeric forms, and the remaining eight as the corresponding NH forms. This was confirmed by ¹³C CPMAS. The results reported were compared with those obtained in CDCl₃ solutions.