Complexation and DFT studies of lower rim hexahomotrioxacalix[3]arene derivatives bearing pyridyl groups with transition and heavy metal cations. Cone versus partial cone conformation

The binding of representative alkali, alkaline earth, transition and heavy metal cations by 2‐pyridylmethoxy derivatives (1b, in cone and partial cone conformations) of p‐tert‐butylhexahomotrioxacalix[3]arene was studied. Binding was assessed by extraction studies of the metal picrates from water into dichloromethane and by stability constant measurements in acetonitrile and methanol, using spectrophotometric and potentiometric techniques. Microcalorimetric studies of some selected complexes in acetonitrile were performed, as well as proton NMR titrations. Computational methods (density functional theory calculations) were also employed to complement the NMR data. The results are compared with those obtained with the dihomooxacalix[4]arene 2b and the calix[4]arene 3b derivative analogues. Partial cone‐1b is the best extractant for transition and heavy metal cations. Both conformers of 1b exhibit very high stability constants for soft and intermediate cations Pb²⁺, Cd²⁺, Hg²⁺, Zn²⁺ and Ni²⁺, with cone‐1b the strongest binder (ML, log β ≥ 7) and partial cone‐1b the most selective. Both derivatives show a slight preference for Na⁺. Besides the formation of ML complexes, ML₂ and M₂L species were also observed. The former complexes were, in general, formed with the transition and heavy metal cations, whereas the latter were obtained with Ag⁺ and Hg²⁺ and partial cone‐1b. In most cases, these species were corroborated by the proton NMR and density functional theory studies. Copyright © 2013 John Wiley & Sons, Ltd.     

A DFT‐GIAO and DFT‐NBO study of polar substituent effects on NMR 17O chemical shifts in some rigid polycyclic alkanes

¹⁷O NMR shieldings of 3‐substituted(X)bicyclo[1.1.1]pentan‐1‐ols ( 1 , Y = OH), 4‐substituted(X)bicyclo[2.2.2]octan‐1‐ols ( 2 , Y = OH), 4‐substituted(X)‐bicyclo[2.2.1]heptan‐1‐ols ( 3 , Y = OH), 4‐substituted(X)‐cuban‐1‐ols ( 4 , Y = OH) and exo‐ and endo‐ 6‐substituted(X)exo‐bicyclo[2.2.1]heptan‐2‐ols ( 5 and 6 , Y = OH, respectively), as well as their conjugate bases ( 1 – 6 , Y = O^?), for a set of substituents (X = H, NO₂, CN, NC, CF₃, COOH, F, Cl, OH, NH₂, CH₃, SiMe₃, Li, O^?, and NH) covering a wide range of electronic substituent effects were calculated using the DFT‐GIAO theoretical model at the B3LYP/6‐311 + G(2d, p) level of theory. By means of natural bond orbital (NBO) analysis various molecular parameters were obtained from the optimized geometries. Linear regression analysis was employed to explore the relationship between the calculated ¹⁷O SCS and polar field and group electronegativity substituent constants (σ_F and σ_χ, respectively) and also the NBO derived molecular parameters (oxygen natural charge, Q_n, occupation numbers of the oxygen lone pairs, n_o, and occupancy of the C? O antibonding orbital, σ*_CO(occup)). In the case of the alcohols ( 1 – 6 , Y = OH) the ¹⁷O SCS appear to be governed predominantly by the σ_χ effect of the substituent. Furthermore, the key determining NBO parameters appear to be n_o and σ*_CO(occup). Unlike the alcohols, the calculated ¹⁷O SCS of the conjugate bases ( 1 – 6 , Y = O^?), except for system 1 , do not respond systematically to the electronic effects of the substituents. An analysis of the SCS of 1 (Y = O^?) raises a significant conundrum with respect to their origin. Copyright © 2010 John Wiley & Sons, Ltd.     

NMR and DFT studies on persistent carbocations derived from benzo[kl]xanthene,dibenzo[d,d′]benzo[1,2‐b:4,3‐b′]difuran,and dibenzo[d,d′]benzo[1,2‐b:4,5‐b′]difuran in superacidic media

Persistent carbocations generated by the protonation of hetero‐polycyclic aromatic compounds with oxygen atom(s) were studied by experimental NMR and density function theory calculations. Benzo[kl]xanthene ( 1 ), dibenzo[d,d′]benzo[1,2‐b:4,3‐b′]difuran ( 2 ), and dibenzo[d,d′]benzo[1,2‐b:4,5‐b′]difuran ( 3 ) were synthesized by the annulation of arenediazonium salts. Compound 1 in FSO₃H‐SbF₅ (4:1)/SO₂ClF and 3 in FSO₃H‐SbF₅ (1:1)/SO₂ClF ionized to 1aH⁺ with protonation at C(4) and to 3aH⁺ with protonation at C(6), and these cations were successfully observed by NMR at low temperatures. The density function theory calculations indicated that 1aH⁺ and 3aH⁺ were the most stable protonated carbocations and that 2 should ionize to 2aH⁺ with protonation at C(6). According to the changes in ¹³C chemical shifts (Δδ¹³C), the positive charge was delocalized into the naphthalene unit for 1aH⁺ , into one benzo[b,d]furan unit for 2aH⁺ , and into one benzo[b,d]furan unit for 3aH⁺ . Copyright © 2015 John Wiley & Sons, Ltd.     

Molecular structure,vibrational spectroscopic studies and NBO analysis of the 3,5‐dichlorophenylboronic acid molecule by the density functional method

In this study, the Fourier‐transform infrared (FT‐IR) and FT‐Raman spectra of 3,5‐dichlorophenylboronicacid (3,5‐dcpba) were recorded in the solid phase. The structural and spectroscopic analysis of the 3,5‐dichlorophenylboronic was made by using density functional harmonic calculations. There are three conformers for this molecule. The computational results diagnose the most stable conformer of 3,5‐dcpba as the ct form. The geometrical parameters and energies have been obtained for all three conformers from DFT (B3LYP) with 6‐311+ + G(d,p) basis set calculations. The vibrations of stable and unstable conformers of 3,5‐dcpba are researched by using quantum chemical calculations. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes calculated with the scaled quantum mechanics (SQM) method. The stability of the molecule arising from hyperconjugative interactions and charge delocalization has been analyzed using the natural bond orbital (NBO) analysis. The results show that the charge in electron density (ED) in the π* and σ* antibonding orbitals and E2 energies confirms the occurrence of ıntermolecular charge transfer (ICT) within the molecule. Finally, the calculation results were applied to simulated infrared and Raman spectra of the title compound, which show agreement with the observed spectra. Copyright © 2010 John Wiley & Sons, Ltd.     

Transmission of polar substituent effects across the cubane ring system: 19F substituent chemical shifts (SCS) of 4‐substituted (X) cub‐1‐yl fluorides revisited

¹⁹F NMR shieldings of 4‐substituted (X) cub‐1‐yl fluorides ( 4 ) for a set of substituents (X?H, NO₂, CN, NC, CF₃, COOH, F, Cl, HO, NH₂, CH₃, Si(CH₃)₃, Li, O^? and NH) covering a wide range of electronic substituent effects were calculated using the DFT‐GIAO theoretical model. The level of theory, B3LYP/6‐311+G(2d,p), provided ¹⁹F substituent chemical shifts (SCS) in good agreement with experimental values where known. By means of NBO analysis, various molecular parameters were obtained from the optimized geometries. Linear regression analysis was employed to explore the relationship between the calculated ¹⁹F SCS and polar field, resonance and group electronegativity substituent constants (σ_F, σ_R and σ_x, respectively) and also the NBO derived molecular parameters (fluorine natural charges (Q_n), electron occupancies on fluorine of lone pairs (n_F) and occupation number of the C? F antibonding orbital (σ_CF*)). The key determining parameters appear to be n_F and σ_CF*(occup). Both factors are a function of the electrostatic field influence of the substituent (σ_F effect) but are counteractive in their influence on the shifts. No evidence for a significant resonance effect influence on the shifts could be identified. Copyright © 2009 John Wiley & Sons, Ltd.     

Double proton transfer in crystals of 1,3,4,6,7,8‐hexahydro‐2H‐pyrimido[1,2‐a] pyrimidine (hppH): 13C and 15N CPMAS NMR study of (hppH)2

In this paper, we report an example of intermolecular solid‐state proton transfer in the bicyclic guanidine, hppH. A combination of X‐ray crystallography, CPMAS NMR (¹³C and ¹⁵N) and theoretical calculations allows us to determine that a double proton transfer takes place in the (hppH)₂ dimer with an activation energy of about 50 kJ mol^?1. According to the B3LYP/6‐311++G(d,p) calculations, the double proton transfer occurs non‐symmetrically through a zwitterion. Copyright © 2009 John Wiley & Sons, Ltd.     

Calculated polar substituent effects on the stability of 4‐substituted(X) ‐ cub‐1‐yl and ‐bicyclo[2.2.2]oct‐1‐yl cations: a DFT study

The effects of substituents on the stability of 4‐substituted(X) cub‐1‐yl cations ( 2 ), as well as the benchmark 4‐substituted(X) bicyclo[2.2.2]oct‐1‐yl cation systems ( 7 ), for a set of substituents (X = H, NO₂, CN, NC, CF₃, COOH , F, Cl, HO, NH₂, CH₃, SiH₃, Si(CH₃)₃, Li, O^?, and NH) covering a wide range of electronic substituent effects were calculated using the DFT theoretical model at the B3LYP/6‐311 + G(2d,p) level of theory. Linear regression analysis was employed to explore the relationship between the calculated relative hydride affinities (ΔE, kcal/mol) of the appropriate isodesmic reactions for 2 / 7 and polar field/group electronegativity substituent constants (σ_F and σ_χ, respectively). The analysis reveals that the ΔE values of both systems are best described by a combination of both substituent constants. This highlights the distinction between through‐space and through‐bond electronic influences characterized by σ_F and σ_χ, respectively. Copyright © 2010 John Wiley & Sons, Ltd.     

Calculated polar substituent effects on the stability of 3‐substituted(X) bicyclo[1.1.1]pent‐1‐yl cations and 4‐substituted(X) bicyclo[2.2.1]hept‐1‐yl cations: a DFT study

The effects of substituents on the stability of 3‐substituted(X) bicyclo[1.1.1]pent‐1‐yl cations (3) and 4‐substituted(X) bicyclo[2.2.1]hept‐1‐yl cations (4), for a set of substituents (X = H, NO₂, CN, NC, CF₃, CHO, COOH , F, Cl, HO, NH₂, CH₃, SiH₃, Si(CH₃)₃, Li, O^?, and NH₃⁺) covering a wide range of electronic substituent effects were calculated using the DFT theoretical model at the B3LYP/6‐311 + G(2d,p) and B3LYP/6‐31 + G (d) levels of theory, respectively. Linear regression analysis was employed to explore the relationship between the calculated relative hydride affinities (ΔE, kcal/mol) of the appropriate isodesmic reactions for 3/4 and polar field/group electronegativity substituent constants (σ_F and σ_χ, respectively). The analysis reveals that the ΔE values for both systems are best described by a combination of both substituent constants. The result highlights the importance of the σ_χ dependency of charge delocalization in these systems. Copyright © 2012 John Wiley & Sons, Ltd.