NMR spectroscopy as a tool to investigate the degradation of aromatic compounds by a Pseudomonas putida strain

Pseudomonas putida strain KT2442, harbouring the pWW0 TOL plasmid, was grown with a number of different homologous aromatic acids as carbon sources. Small samples of liquid culture supernatant were collected and directly analysed by 2D NMR spectroscopy. In all cases similar compounds with olefinic signals were observed to accumulate. To elucidate the structures of these compounds, 2D NMR experiments with 500 and 600 MHz spectrometers equipped with a CryoProbe (Bruker BioSpin) were performed on samples obtained from a culture growing on 4‐methylbenzoate and, for ¹³C spectroscopy, on ¹³C‐labelled 4‐methylbenzoate. In all cases a 1,2‐dihydroxycyclohexa‐3,5‐diene‐carboxylate derivative was identified. The use of this technique helped us to identify easily some metabolites that were released into the solution by bacteria and to follow their secretion as a function of time. The high sensitivity of the present approach allowed a clear and rapid acquisition of spectra, notwithstanding the low concentration of the compounds. The benefits of introducing the use of NMR cryoprobes to perform metabolic pathway studies is demonstrated. Copyright © 2003 John Wiley & Sons, Ltd.     

Fast multidimensional localized parallel NMR spectroscopy for the analysis of samples

A parallel localized spectroscopy (PALSY) method is presented to speed up the acquisition of multidimensional NMR (nD) spectra. The sample is virtually divided into a discrete number of nonoverlapping slices that relax independently during consecutive scans of the experiment, affording a substantial reduction in the interscan relaxation delay and the total experiment time. PALSY was tested for the acquisition of three experiments 2D COSY, 2D DQF‐COSY and 2D TQF‐COSY in parallel, affording a time‐saving factor of 3–4. Some unique advantages are that the achievable resolution in any dimension is not compromised in any way: it uses conventional NMR data processing, it is not prone to generate spectral artifacts, and once calibrated, it can be used routinely with these and other combinations of NMR spectra. Copyright © 2010 John Wiley & Sons, Ltd.     

F2-selective two-dimensional NMR spectroscopy for the analysis of minor components in foods

In this study, we propose F(2)-selective 2D NMR spectroscopy as an effective method to obtain high-quality spectra of minor components in complex foodstuffs. Selective excitation along the F(2) axis overcame the problems occurring in the conventional F(1)-selective 2D NMR spectroscopy. The technique was successfully applied to mango juice to provide high-quality TOCSY, DQF-COSY, and NOESY spectra of the minor components for the assignment of their signals. In addition, high-quality TOCSY spectra were obtained for the minor components of Japanese sake and honey. These results indicate that F(2)-selective 2D NMR spectroscopy will be useful for the non-destructive analysis of various foods.     

1H NMR metabolite fingerprinting as a new tool for body fluid identification in forensic science

In this feasibility study, we propose, for the first time, ¹H NMR spectroscopy coupled with mathematical strategies as a valid tool for body fluid (BF) trace identification in forensic science. In order to assess the ability of this approach to identify traces composed either by a single or by two different BFs, samples of blood, urine, saliva, and semen were collected from different donors, and binary mixtures were prepared. ¹H NMR analyses were carried out for all samples. Spectral data of the whole set were firstly submitted to unsupervised principal component analysis (PCA); it showed that samples of the same BF cluster well on the basis of their characterizing molecular components and that mixtures exhibit intermediate characteristics among BF typologies. Furthermore, samples were divided into a training set and a test set. An average NMR spectral profile for each typology of BF was obtained from the training set and validated as representative of each BF class. Finally, a fitting procedure, based on a system of linear equations with the four obtained average spectral profiles, was applied to the test set and the mixture samples; it showed that BFs can be unambiguously identified, even as components of a mixture. The successful use of this mathematical procedure has the advantage, in forensics, of overcoming bias due to the analyst's personal judgment. We therefore propose this combined approach as a valid, fast, and non‐destructive tool for addressing the challenges in the identification of composite traces in forensics. Copyright © 2013 John Wiley & Sons, Ltd.     

Benchtop 19F NMR spectroscopy as a practical tool for testing of remedial technologies for the degradation of perfluorooctanoic acid,a persistent organic pollutant

The development of effective remedial technologies for the destruction of environmental pollutants requires the ability to clearly monitor degradation processes. Nuclear magnetic resonance (NMR) spectroscopy is a powerful tool for understanding reaction progress; however, practical considerations often restrict the application of NMR spectroscopy as a tool to better understand the degradation of environmental pollutants. Chief among these restrictions is the limited access smaller environmental research labs and remediation companies have to suitable NMR facilities. Benchtop NMR spectroscopy is a low-cost and user-friendly approach to acquire much of the same information as conventional nuclear magnetic resonance (NMR) spectroscopy, albeit with reduced sensitivity and resolution. This paper explores the practical application of benchtop NMR spectroscopy to understand the degradation of perfluorooctanoic acid using sodium persulfate, a common reagent for the destruction of groundwater contaminants. It is found that Benchtop ¹⁹F NMR spectroscopy is able to monitor the complete degradation of perfluorooctanoic acid into fluoride; however, the observation of intermediate degradation products formed, which can be observed using a conventional NMR spectrometer, cannot be readily distinguished from the parent compound when measurements are performed using the benchtop instrument. Under certain reaction conditions, the formation of fluorinated structures that are resistant to further degradation is readily observed. Overall, it is shown that benchtop ¹⁹F NMR spectroscopy has potential as a quick and reliable tool to assist in the development of remedial technologies for the degradation of fluorinated contaminants.     

手性溶剂-NMR法测定2,4-滴丙酸对映体纯度的定量分析

研究了手性溶剂法测定2,4-滴丙酸的^1H、^13C谱,在满足NMR准确定量所要求的分离度和信噪比的条件下,能准确测定手性化合物的对映体纯度。比较了以对映体百分含量（R％）和对映体过量（ee）表示手性农药的对映体纯度的差别,发现以对映体百分含量代替对映体过量来表示手性农药的对映体纯度更为准确。     

Experimentally available kinetic codes as a tool for promising data extraction in thermal analysis

By the study of 3000 kinetic runs for all homogeneous two-step models under variation of activation and signal parameters, it has been stated that the generated Mechanistic Concentration Code (=MCC) is the best vehicle for data extraction in Thermal Analysis. It summarises the rate-controlling steps and their molecularities, independently of their activation data and (to 80–90%) of their method-specific signal parameters. Hence, an optimum evaluation needs the internal (best-fitted) reference step, the initial concentration of a reference reactant, and equal weight of theoretical and experimental results, reached using the same algorithms. Thus, the MCC of any series measured in general allows for a reliable model determination via the distribution into all two-step models, using the tools of probability and decision theory. A transfer of the strategy to heterogeneous reactions is discussed.

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Zusammenfassung Durch die Untersuchung von über 3000 kinetischen Abläufen für alle homogenkinetischen Zweistufen-Modelle wurde festgestellt, da\ der Mechanistische Konzentrations-Code (= MCC) ein optimaler Datenträger in der Thermischen Analyse ist: Er beschreibt die geschwindigkeitsbestimmenden Schritte und ihre Molekularität, unab- hängig von deren Aktivierungsdaten und, zu 80–90%, von ihren methodenspezifischen Signalparametern. Ein optimales Auswerteverfahren benötigt einen internen (optimal angepa\ten) Referenzschritt, die Startkonzentration eines Referenz-Reaktanten und Gleichberechtigung theoretischer und experimenteller Befunde, erreicht, durch Verwendung derselben Algorithmen. Allgemein ermöglicht der MCC aus einer Reihe von Experimenten dann eine Modellbestimmung über eine Verteilung, die durch entscheidungstheoretische Kriterien die Wahrscheinlichkeiten aller Zweistufenmodelle auflistet.Eine übertragung des Verfahrens auf heterogene Prozesse wird diskutiert.

     

一种金属洗涤剂的NMR分析

由于精细化工行业的迅速发展,作为“工业味精”的表面活性剂,已广泛进入日化、轻工、纺织、建筑、石化、金属加工等生产领域,对其的分析也显得日益重要。表面活性剂的分析历来是比较困难的课题之一,而通过核磁共振(NMR)进行定性和定量的文献则更少[1]。本文利用NMR为多种表面活     

NMR analysis of biindenylidenes

The ¹H and ¹³C NMR parameters (chemical shifts and coupling constants) were determined of four biindenylidene isomers, (E)‐2,3,2′,3′‐tetrahydro‐[1,1′]biindenylidene, (Z)‐2,3,2′,3′‐tetrahydro‐[1,1′]biindenylidene, 1,3,1′, 3′‐tetrahydro‐[2,2′]biindenylidene and 2,3,1′,3′‐tetrahydro‐[1,2′]biindenylidene. Copyright © 2003 John Wiley & Sons, Ltd.     

Enhanced chromatographic NMR with polyethyleneglycol. A novel resolving agent for diffusion ordered spectroscopy

NMR analysis of complex mixtures can be significantly simplified using polyethyleneglycol (PEG) as resolving additive in DOSY NMR technique, which allows the extraction of individual spectra of mixture components with differing polarity. Resolving power of PEG‐assisted DOSY was demonstrated with natural product mixtures. Copyright © 2010 John Wiley & Sons, Ltd.     

Structure and dynamics of room temperature ionic liquids with bromide anion: results from 81Br NMR spectroscopy

We report the results of a comprehensive ⁸¹Br NMR spectroscopic study of the structure and dynamics of two room temperature ionic liquids (RTILs), 1‐butyl‐3‐methylimidazolium bromide ([C₄mim]Br) and 1‐butyl‐2,3‐dimethylimidazolium bromide ([C₄C₁mim]Br), in both liquid and crystalline states. NMR parameters in the gas phase are also simulated for stable ion pairs using quantum chemical calculations. The combination of ⁸¹Br spin‐lattice and spin‐spin relaxation measurements in the motionally narrowed region of the stable liquid state provides information on the correlation time of the translational motion of the cation. ⁸¹Br quadrupolar coupling constants (C_Q) of the two RTILs were estimated to be 6.22 and 6.52 MHz in the crystalline state which were reduced by nearly 50% in the liquid state, although in the gas phase, the values are higher and span the range of 7–53 MHz depending on ion pair structure. The C_Q can be correlated with the distance between the cation–anion pairs in all the three states. The ⁸¹Br C_Q values of the bromide anion in the liquid state indicate the presence of some structural order in these RTILs, the degree of which decreases with increasing temperature. On the other hand, the ionicity of these RTILs is estimated from the combined knowledge of the isotropic chemical shift and the appropriate mean energy of the excited state. [C₄C₁mim]Br has higher ionicity than [C₄mim]Br in the gas phase, while the situation is reverse for the liquid and the crystalline states. Copyright © 2015 John Wiley & Sons, Ltd.     

Solid-state NMR spectroscopy of the quadrupolar halogens: chlorine-35/37, bromine-79/81, and iodine-127

A thorough review of 35/37Cl, 79/81Br, and 127I solid-state nuclear magnetic resonance (SSNMR) data is presented. Isotropic chemical shifts (CS), quadrupolar coupling constants, and other available information on the magnitude and orientation of the CS and electric field gradient (EFG) tensors for chlorine, bromine, and iodine in diverse chemical compounds is tabulated on the basis of over 200 references. Our coverage is through July 2005. Special emphasis is placed on the information available from the study of powdered diamagnetic solids in high magnetic fields. Our survey indicates a recent notable increase in the number of applications of solid-state quadrupolar halogen NMR, particularly 35Cl NMR, as high magnetic fields have become more widely available to solid-state NMR spectroscopists. We conclude with an assessment of possible future directions for research involving 35/37Cl, 79/81Br, and 127I solid-state NMR spectroscopy.     

A simple flowcell for reaction monitoring by NMR

A simple, cheap and flexible flowcell based on a standard 5 mm NMR tube, designed for the monitoring of reactions but of wide applicability, is described. No modification of the NMR instrument is needed, allowing the system to be employed with any conventional NMR probe and magnet. The system is robust and economical in use of reagents, and can be used for studying both homogeneous and heterogeneous reactions. Copyright © 2010 John Wiley & Sons, Ltd.     

Towards the automatic analysis of 1H NMR spectra: Part 4--additional requirements of flow-NMR

Flow-NMR allows more rapid and convenient acquisition of NMR spectra. Its main application area has therefore been in multiple parallel synthesis or combinatorial chemistry. At the same time, there is a significant need to automate the analysis of the resultant spectra. However, flow-NMR brings spectral imperfections, which compromise attempts to automate this analysis. This study proposes experimental and computational expedients to accommodate the effects of residual solvent peaks, 13C satellites, finite signal-to-noise ratio, impurities, presaturation on integral calculations, the 'silent' region and how multiplet areas can be scaled to numbers of protons in this environment.     

Structural analysis of complex saponins of Balanites aegyptiaca by 800 MHz 1H NMR spectroscopy

The main saponin (1) present in the mesocarp of Balanites aegyptiaca fruit is a mixture of 22R and 22S epimers of 26-(O-beta-D-glucopyranosyl)-3-beta-[4-O-(beta-D-glucopyranosyl)-2-O-(alpha-L-rhamnopyranosyl)-beta-D-glucopyranosyloxy]-22,26-dihydroxyfurost-5-ene. This structure differs from a previously reported saponin isolated from this source by the site of attachment of the rhamnosyl residue, and presumably represents a structural revision of the latter. The main saponin (2) present in the kernel is a xylopyranosyl derivative of 1. The use of high-field NMR enabled the practically complete assignment of 1H and 13C chemical shifts of these complex saponins, existing as a mixture of C-22 epimers. Moreover, the work represents a new approach to structural elucidation of saponins: direct preparative-scale HPLC-RID of crude extracts followed by high-field NMR investigations supported by ESI-MSn.     

NMR spectroscopy goes mobile: Using NMR as process analytical technology at the fume hood

Nuclear magnetic resonance (NMR) is potentially a very powerful process analytical technology (PAT) tool as it gives an atomic resolution picture of the reaction mixture without the need for chromatography. NMR is well suited for interrogating transient intermediates, providing kinetic information via NMR active nuclei, and most importantly provides universally quantitative information for all species in solution. This contrasts with commonly used PAT instruments, such as Raman or Flow-infrared (IR), which requires a separate calibration curve for every component of the reaction mixture. To date, the large footprint of high-field (≥400 MHz) NMR spectrometers and the immobility of superconducting magnets, coupled with strict requirements for the architecture for the room it is to be installed, have been a major obstacle to using this technology right next to fume hoods where chemists perform synthetic work. Here, we describe the use of a small, lightweight 60 MHz Benchtop NMR system (Nanalysis Pro-60) located on a mobile platform, that was used to monitor both small and intermediate scale Grignard formation and coupling reactions. We also show how low field NMR can provide a deceptively simple yes/no answer (for a system that would otherwise require laborious off-line testing) in the enrichment of one component versus another in a kilogram scale distillation. Benchtop NMR was also used to derive molecule specific information from Flow-IR, a technology found in most manufacturing sites, and compare the ease at which the concentrations of the reaction mixtures can be derived by NMR versus IR.     

Structure elucidation of a novel group of dithiocarbamate derivatives using 1D and 2D NMR spectroscopy

Compounds 1-7 form a novel group of dithiocarbamates, first synthesized from the reaction of a series of primary amines with carbon disulfide and 3-bromo ethyl pyruvate in the presence of anhydrous potassium phosphate. Structure elucidation of this group of compounds was accomplished using extensive 1D and 2D NMR spectroscopic studies, including (1)H, (13)C, COSY, NOESY, HSQC, and gHMBC experiments. The distinction between the linear structures I, II and the cyclic structure III was made mainly on the basis of the analysis of the cross peak between H-2 and H-4a in the COSY spectra, in combination with the long-range correlation between H-2 and C-4, 6 in the gHMBC spectra.     

Towards the automatic analysis of 1H NMR spectra: Part 3. Confirmation of postulated chemical structure

A method is proposed which automatically compares experimental and predicted ¹H chemical shifts, integrals and scalar couplings and allows the structure on which the predictions are based to be confirmed or refuted. The method is comparatively insensitive to the variable presence of labile protons but is sensitive to the reliability of chemical shift prediction. Nonetheless, even with current commercially available ¹H chemical shift prediction, amongst a set of unrelated compounds the structure can be confirmed with 99% confidence. Where the compounds are closely related, the confidence decreases to approximately 60%, or 88% when labile protons are excluded. If closely related pairs are nominated explicitly, a specific criterion can be set for each pair, allowing every pair to be differentiated. Copyright © 2002 John Wiley & Sons, Ltd.     

A simple approach for phase-modulated single-scan 2D NMR spectroscopy

Conventional NMR spectroscopy techniques require long acquisition times due to the recovery time between the repeated excitations necessary for each increment of the evolution times in the indirectly detected dimensions. Here we outline a pulse sequence element for gradient-assisted ultrafast multidimensional NMR spectroscopy using frequency-modulated 'chirp' pulses to generate phase-modulated magnetization in an indirectly detected spectral dimension. The potential of this sequence element is demonstrated by acquiring a correlation spectroscopy (COSY) spectrum in 96 ms. This new pulse sequence element is an extension of ultrafast spectroscopy techniques based on the generation of amplitude modulation of the NMR signal in the indirectly detected spectral dimensions. The use of phase modulation instead of amplitude modulation helps broaden the applicability and may provide an increase of sensitivity in some experiments due to the ability to distinguish between positive and negative frequency offsets relative to the carrier frequency of the sequence element.