Simulation of non‐hydrostatic,density‐stratified flow in irregular domains

A numerical model has been developed for simulating density‐stratified flow in domains with irregular but simple topography. The model was designed for simulating strong interactions between internal gravity waves and topography, e.g. exchange flows in contracting channels, tidally or convectively driven flow over two‐dimensional sills or waves propagating onto a shoaling bed. The model is based on the non‐hydrostatic, Boussinesq equations of motion for a continuously stratified fluid in a rotating frame, subject to user‐configurable boundary conditions. An orthogonal boundary fitting co‐ordinate system is used for the numerical computations, which rely on a fourth‐order compact differentiation scheme, a third‐order explicit time stepping and a multi‐grid based pressure projection algorithm. The numerical techniques are described and a suite of validation studies are presented. The validation studies include a pointwise comparison of numerical simulations with both analytical solutions and laboratory measurements of non‐linear solitary wave propagation. Simulation results for flows lacking analytical or laboratory data are analysed a posteriori to demonstrate satisfaction of the potential energy balance. Computational results are compared with two‐layer hydraulic predictions in the case of exchange flow through a contracting channel. Finally, a simulation of circulation driven by spatially non‐uniform surface buoyancy flux in an irregular basin is discussed. Copyright © 2000 John Wiley & Sons, Ltd.     

Depth‐averaged two‐dimensional curvilinear explicit finite analytic model for open‐channel flows

A depth‐averaged two‐dimensional model has been developed in the curvilinear co‐ordinate system for free‐surface flow problems. The non‐linear convective terms of the momentum equations are discretized based on the explicit–finite–analytic method with second‐order accuracy in space and first‐order accuracy in time. The other terms of the momentum equations, as well as the mass conservation equation, are discretized by the finite difference method. The discretized governing equations are solved in turn, and iteration in each time step is adopted to guarantee the numerical convergence. The new model has been applied to various flow situations, even for the cases with the presence of sub‐critical and supercritical flows simultaneously or sequentially. Comparisons between the numerical results and the experimental data show that the proposed model is robust with satisfactory accuracy. Copyright © 2000 John Wiley & Sons, Ltd.     

A σ‐coordinate three‐dimensional numerical model for surface wave propagation

A three‐dimensional numerical model based on the full Navier–Stokes equations (NSE) in σ‐coordinate is developed in this study. The σ‐coordinate transformation is first introduced to map the irregular physical domain with the wavy free surface and uneven bottom to the regular computational domain with the shape of a rectangular prism. Using the chain rule of partial differentiation, a new set of governing equations is derived in the σ‐coordinate from the original NSE defined in the Cartesian coordinate. The operator splitting method (Li and Yu, Int. J. Num. Meth. Fluids 1996; 23 : 485–501), which splits the solution procedure into the advection, diffusion, and propagation steps, is used to solve the modified NSE. The model is first tested for mass and energy conservation as well as mesh convergence by using an example of water sloshing in a confined tank. Excellent agreements between numerical results and analytical solutions are obtained. The model is then used to simulate two‐ and three‐dimensional solitary waves propagating in constant depth. Very good agreements between numerical results and analytical solutions are obtained for both free surface displacements and velocities. Finally, a more realistic case of periodic wave train passing through a submerged breakwater is simulated. Comparisons between numerical results and experimental data are promising. The model is proven to be an accurate tool for consequent studies of wave‐structure interaction. Copyright © 2002 John Wiley & Sons, Ltd.     

Dispersion and stability analyses of the linearized two‐dimensional shallow water equations in boundary‐fitted co‐ordinates

In the present investigation, a Fourier analysis is used to study the phase and group speeds of a linearized, two‐dimensional shallow water equations, in a non‐orthogonal boundary‐fitted co‐ordinate system. The phase and group speeds for the spatially discretized equations, using the second‐order scheme in an Arakawa C grid, are calculated for grids with varying degrees of non‐orthogonality and compared with those obtained from the continuous case. The spatially discrete system is seen to be slightly dispersive, with the degree of dispersivity increasing with an decrease in the grid non‐orthogonality angle or decrease in grid resolution and this is in agreement with the conclusions reached by Sankaranarayanan and Spaulding (J. Comput. Phys., 2003; 184 : 299–320). The stability condition for the non‐orthogonal case is satisfied even when the grid non‐orthogonality angle, is as low as 30° for the Crank Nicolson and three‐time level schemes. A two‐dimensional wave deformation analysis, based on complex propagation factor developed by Leendertse (Report RM‐5294‐PR, The Rand Corp., Santa Monica, CA, 1967), is used to estimate the amplitude and phase errors of the two‐time level Crank–Nicolson scheme. There is no dissipation in the amplitude of the solution. However, the phase error is found to increase, as the grid angle decreases for a constant Courant number, and increases as Courant number increases. Copyright © 2003 John Wiley & Sons, Ltd.     

A two‐dimensional vertical non‐hydrostatic σ model with an implicit method for free‐surface flows

An implicit finite difference model in the σ co‐ordinate system is developed for non‐hydrostatic, two‐dimensional vertical plane free‐surface flows. To accurately simulate interaction of free‐surface flows with uneven bottoms, the unsteady Navier–Stokes equations and the free‐surface boundary condition are solved simultaneously in a regular transformed σ domain using a fully implicit method in two steps. First, the vertical velocity and pressure are expressed as functions of horizontal velocity. Second, substituting these relationship into the horizontal momentum equation provides a block tri‐diagonal matrix system with the unknown of horizontal velocity, which can be solved by a direct matrix solver without iteration. A new treatment of non‐hydrostatic pressure condition at the top‐layer cell is developed and found to be important for resolving the phase of wave propagation. Additional terms introduced by the σ co‐ordinate transformation are discretized appropriately in order to obtain accurate and stable numerical results. The developed model has been validated by several tests involving free‐surface flows with strong vertical accelerations and non‐linear waves interacting with uneven bottoms. Comparisons among numerical results, analytical solutions and experimental data show the capability of the model to simulate free‐surface flow problems. Copyright © 2004 John Wiley & Sons, Ltd.     

A σ‐coordinate non‐hydrostatic model with embedded Boussinesq‐type‐like equations for modeling deep‐water waves

A σ‐coordinate non‐hydrostatic model, combined with the embedded Boussinesq‐type‐like equations, a reference velocity, and an adapted top‐layer control, is developed to study the evolution of deep‐water waves. The advantage of using the Boussinesq‐type‐like equations with the reference velocity is to provide an analytical‐based non‐hydrostatic pressure distribution at the top‐layer and to optimize wave dispersion property. The σ‐based non‐hydrostatic model naturally tackles the so‐called overshooting issue in the case of non‐linear steep waves. Efficiency and accuracy of this non‐hydrostatic model in terms of wave dispersion and nonlinearity are critically examined. Overall results show that the newly developed model using a few layers is capable of resolving the evolution of non‐linear deep‐water wave groups. Copyright © 2009 John Wiley & Sons, Ltd.     

Three‐dimensional modeling of non‐hydrostatic free‐surface flows on unstructured grids

A three‐dimensional numerical model is presented for the simulation of unsteady non‐hydrostatic shallow water flows on unstructured grids using the finite volume method. The free surface variations are modeled by a characteristics‐based scheme, which simulates sub‐critical and super‐critical flows. Three‐dimensional velocity components are considered in a collocated arrangement with a σ‐coordinate system. A special treatment of the pressure term is developed to avoid the water surface oscillations. Convective and diffusive terms are approximated explicitly, and an implicit discretization is used for the pressure term to ensure exact mass conservation. The unstructured grid in the horizontal direction and the σ coordinate in the vertical direction facilitate the use of the model in complicated geometries. Solution of the non‐hydrostatic equations enables the model to simulate short‐period waves and vertically circulating flows. Copyright © 2015 John Wiley & Sons, Ltd.     

A mass‐fraction‐based interface‐capturing method for multi‐component flow

An interface‐capturing method based on mass fraction is developed to solve the Riemann problem in multi‐component compressible flow. Equations of mass fraction with modified form, which is derived from conservative equations of mass, are employed here to capture the interface. By introducing mass fraction into Euler equations system, as well as other conservative coefficients, a quasi‐conservative numerical model is created. Numerical examples show that the mass fraction model performs well not only in multi‐component fluids modeled by simple stiffened gas equation of state (EOS) but also in that modeled by complex Mie–Grüneisen EOS. Moreover, the mass fraction model is applied to Riemann problem with piecewise EOS; the expression of which depends on density. It is found that the mass fraction model can well adapt to the analytic change in piecewise EOS and produce accuracy solutions with fewer unknown quantities, and the model can be easily extended to m‐component fluid mixture by using only m + 4 equations with no additional conditions. Copyright © 2013 John Wiley & Sons, Ltd.     

A fully non‐linear model for three‐dimensional overturning waves over an arbitrary bottom

An accurate three‐dimensional numerical model, applicable to strongly non‐linear waves, is proposed. The model solves fully non‐linear potential flow equations with a free surface using a higher‐order three‐dimensional boundary element method (BEM) and a mixed Eulerian–Lagrangian time updating, based on second‐order explicit Taylor series expansions with adaptive time steps. The model is applicable to non‐linear wave transformations from deep to shallow water over complex bottom topography up to overturning and breaking. Arbitrary waves can be generated in the model, and reflective or absorbing boundary conditions specified on lateral boundaries. In the BEM, boundary geometry and field variables are represented by 16‐node cubic ‘sliding’ quadrilateral elements, providing local inter‐element continuity of the first and second derivatives. Accurate and efficient numerical integrations are developed for these elements. Discretized boundary conditions at intersections (corner/edges) between the free surface or the bottom and lateral boundaries are well‐posed in all cases of mixed boundary conditions. Higher‐order tangential derivatives, required for the time updating, are calculated in a local curvilinear co‐ordinate system, using 25‐node ‘sliding’ fourth‐order quadrilateral elements. Very high accuracy is achieved in the model for mass and energy conservation. No smoothing of the solution is required, but regridding to a higher resolution can be specified at any time over selected areas of the free surface. Applications are presented for the propagation of numerically exact solitary waves. Model properties of accuracy and convergence with a refined spatio‐temporal discretization are assessed by propagating such a wave over constant depth. The shoaling of solitary waves up to overturning is then calculated over a 1:15 plane slope, and results show good agreement with a two‐dimensional solution proposed earlier. Finally, three‐dimensional overturning waves are generated over a 1:15 sloping bottom having a ridge in the middle, thus focusing wave energy. The node regridding method is used to refine the discretization around the overturning wave. Convergence of the solution with grid size is also verified for this case. Copyright © 2001 John Wiley & Sons, Ltd.     

A robust and well‐balanced scheme for the 2D Saint‐Venant system on unstructured meshes with friction source term

In the following lines, we propose a numerical scheme for the shallow‐water system supplemented by topography and friction source terms, in a 2D unstructured context. This work proposes an improved version of the well‐balanced and robust numerical model recently introduced by Duran et al. (J. Comp. Phys., 235 , 565–586, 2013) for the pre‐balanced shallow‐water equations, accounting for varying topography. The present work aims at relaxing the robustness condition and includes a friction term. To this purpose, the scheme is modified using a recent method, entirely based on a modified Riemann solver. This approach preserves the robustness and well‐balanced properties of the original scheme and prevents unstable computations in the presence of low water depths. A series of numerical experiments are devoted to highlighting the performances of the resulting scheme. Simulations involving dry areas, complex geometry and topography are proposed to validate the stability of the numerical model in the neighbourhood of wet/dry transitions. Copyright © 2015 John Wiley & Sons, Ltd.     

Remedies for artificial diapycnal mixing in a σ co‐ordinated model of Tokyo Bay1

False diapycnal mixing often occurs due to horizontal diffusion in the simulation of heat, salinity, or water quality in estuaries by using a σ co‐ordinated ocean model. The Princeton ocean model (POM) is used as a basic σ co‐ordinated model and is applied to Tokyo Bay. Only river discharges are introduced into the model as external forces. Two remedies recommended in the POM, Stelling's horizontal diffusion approximation, Huang's new diffusion formula, Song and Haidvogel's s co‐ordinates, and Smolarkiewicz advection scheme have all been examined for suppressing the false diapycnal mixing. The conclusions are that the simultaneous use of POM's remedy and Stelling's approximation and the simultaneous use of POM's remedy and s co‐ordinates are the most effective. Copyright © 2001 John Wiley & Sons, Ltd.     

Evaluation of well‐balanced bore‐capturing schemes for 2D wetting and drying processes

We consider numerical solutions of the two‐dimensional non‐linear shallow water equations with a bed slope source term. These equations are well‐suited for the study of many geophysical phenomena, including coastal engineering where wetting and drying processes are commonly observed. To accurately describe the evolution of moving shorelines over strongly varying topography, we first investigate two well‐balanced methods of Godunov‐type, relying on the resolution of non‐homogeneous Riemann problems. But even if these schemes were previously proved to be efficient in many simulations involving occurrences of dry zones, they fail to compute accurately moving shorelines. From this, we investigate a new model, called SURF_WB, especially designed for the simulation of wave transformations over strongly varying topography. This model relies on a recent reconstruction method for the treatment of the bed‐slope source term and is able to handle strong variations of topography and to preserve the steady states at rest. In addition, the use of the recent VFRoe‐ncv Riemann solver leads to a robust treatment of wetting and drying phenomena. An adapted ‘second order’ reconstruction generates accurate bore‐capturing abilities.This scheme is validated against several analytical solutions, involving varying topography, time dependent moving shorelines and convergences toward steady states. This model should have an impact in the prediction of 2D moving shorelines over strongly irregular topography. Copyright © 2006 John Wiley & Sons, Ltd.     

Boundary‐fitted non‐linear dispersive wave model for regions of arbitrary geometry

A vertically integrated non‐linear dispersive wave model is expressed in non‐orthogonal curvilinear co‐ordinate system for simulating shallow or deep water wave motions in regions of arbitrary geometry. Both dependent and independent variables are transformed so that an irregular physical domain is converted into a rectangular computational domain with contravariant velocities. Thus, the wall condition for enclosures surrounding a typical physical domain, such as a channel, port or harbor, is satisfied accurately and easily. The numerical scheme is based on staggered grid finite‐difference approximations, which result in implicit formulations for the momentum equations and semi‐explicit formulation for the continuity equation. Test cases of linear wave propagation in converging, diverging and circular channels are performed to check the reliability of model simulations against the analytical solutions. Cnoidal waves of different steepness values in a circular channel are also considered as examples to non‐linear wave propagation within curved walls. In closing, remarks concerning versatility and practical uses of the numerical model are made. Copyright © 2004 John Wiley & Sons, Ltd.     

A dual‐weighted trust‐region adaptive POD 4‐D Var applied to a finite‐volume shallow water equations model on the sphere

In this paper we study solutions of an inverse problem for a global shallow water model controlling its initial conditions specified from the 40‐yr ECMWF Re‐analysis (ERA‐40) data sets, in the presence of full or incomplete observations being assimilated in a time interval (window of assimilation) with or without background error covariance terms. As an extension of the work by Chen et al. (Int. J. Numer. Meth. Fluids 2009), we attempt to obtain a reduced order model of the above inverse problem, based on proper orthogonal decomposition (POD), referred to as POD 4D‐Var for a finite volume global shallow water equation model based on the Lin–Rood flux‐form semi‐Lagrangian semi‐implicit time integration scheme. Different approaches of POD implementation for the reduced inverse problem are compared, including a dual‐weighted method for snapshot selection coupled with a trust‐region POD adaptivity approach. Numerical results with various observational densities and background error covariance operator are also presented. The POD 4‐D Var model results combined with the trust‐region adaptivity exhibit similarity in terms of various error metrics to the full 4D Var results, but are obtained using a significantly lesser number of minimization iterations and require lesser CPU time. Based on our previous and current work, we conclude that POD 4‐D Var certainly warrants further studies, with promising potential of its extension to operational 3‐D numerical weather prediction models. Copyright © 2011 John Wiley & Sons, Ltd.     

Three‐dimensional numerical modelling of free surface flows with non‐hydrostatic pressure

A three‐dimensional numerical model is developed for incompressible free surface flows. The model is based on the unsteady Reynolds‐averaged Navier–Stokes equations with a non‐hydrostatic pressure distribution being incorporated in the model. The governing equations are solved in the conventional sigma co‐ordinate system, with a semi‐implicit time discretization. A fractional step method is used to enable the pressure to be decomposed into its hydrostatic and hydrodynamic components. At every time step one five‐diagonal system of equations is solved to compute the water elevations and then the hydrodynamic pressure is determined from a pressure Poisson equation. The model is applied to three examples to simulate unsteady free surface flows where non‐hydrostatic pressures have a considerable effect on the velocity field. Emphasis is focused on applying the model to wave problems. Two of the examples are about modelling small amplitude waves where the hydrostatic approximation and long wave theory are not valid. The other example is the wind‐induced circulation in a closed basin. The numerical solutions are compared with the available analytical solutions for small amplitude wave theory and very good agreement is obtained. Copyright © 2002 John Wiley & Sons, Ltd.     

Computation of unsteady viscous incompressible flows in generalized non‐inertial co‐ordinate system using Godunov‐projection method and overlapping meshes

Time‐dependent incompressible Navier–Stokes equations are formulated in generalized non‐inertial co‐ordinate system and numerically solved by using a modified second‐order Godunov‐projection method on a system of overlapped body‐fitted structured grids. The projection method uses a second‐order fractional step scheme in which the momentum equation is solved to obtain the intermediate velocity field which is then projected on to the space of divergence‐free vector fields. The second‐order Godunov method is applied for numerically approximating the non‐linear convection terms in order to provide a robust discretization for simulating flows at high Reynolds number. In order to obtain the pressure field, the pressure Poisson equation is solved. Overlapping grids are used to discretize the flow domain so that the moving‐boundary problem can be solved economically. Numerical results are then presented to demonstrate the performance of this projection method for a variety of unsteady two‐ and three‐dimensional flow problems formulated in the non‐inertial co‐ordinate systems. Copyright © 2002 John Wiley & Sons, Ltd.     

Evaluation of Smagorinsky‐based subgrid‐scale models in a finite‐volume computation

Smagorinsky‐based models are assessed in a turbulent channel flow simulation at Re_b=2800 and Re_b=12500. The Navier–Stokes equations are solved with three different grid resolutions by using a co‐located finite‐volume method. Computations are repeated with Smagorinsky‐based subgrid‐scale models. A traditional Smagorinsky model is implemented with a van Driest damping function. A dynamic model assumes a similarity of the subgrid and the subtest Reynolds stresses and an explicit filtering operation is required. A top‐hat test filter is implemented with a trapezoidal and a Simpson rule. At the low Reynolds number computation none of the tested models improves the results at any grid level compared to the calculations with no model. The effect of the subgrid‐scale model is reduced as the grid is refined. The numerical implementation of the test filter influences on the result. At the higher Reynolds number the subgrid‐scale models stabilize the computation. An analysis of an accurately resolved flow field reveals that the discretization error overwhelms the subgrid term at Re_b=2800 in the most part of the computational domain. Copyright © 2002 John Wiley & Sons, Ltd.     

Calculation of curved open channel flow using physical curvilinear non‐orthogonal co‐ordinates

There are two main difficulties in numerical simulation calculations using FD/FV method for the flows in real rivers. Firstly, the boundaries are very complex and secondly, the generated grid is usually very non‐uniform locally. Some numerical models in this field solve the first difficulty by the use of physical curvilinear orthogonal co‐ordinates. However, it is very difficult to generate an orthogonal grid for real rivers and the orthogonal restriction often forces the grid to be over concentrated where high resolution is not required. Recently, more and more models solve the first difficulty by the use of generalized curvilinear co‐ordinates (ξ,η). The governing equations are expressed in a covariant or contra‐variant form in terms of generalized curvilinearco‐ordinates (ξ,η). However, some studies in real rivers indicate that this kind of method has some undesirable mesh sensitivities. Sharp differences in adjacent mesh size may easily lead to a calculation stability problem oreven a false simulation result. Both approaches used presently have their own disadvantages in solving the two difficulties that exist in real rivers. In this paper, the authors present a method for two‐dimensional shallow water flow calculations to solve both of the main difficulties, by formulating the governing equations in a physical form in terms of physical curvilinear non‐orthogonal co‐ordinates (s,n). Derivation of the governing equations is explained, and two numerical examples are employed to demonstrate that the presented method is applicable to non‐orthogonal and significantly non‐uniform grids. Copyright © 2004 John Wiley & Sons, Ltd.     

Non‐self‐overlapping structured grid generation on an n‐sided surface

Most existing meshing algorithms for a 2D or shell figure requires the figure to have exactly four sides. Generating structured grids in the n‐sided parametric region of a trimmed surface thus usually requires to first partition the region into four‐sided sub‐regions. We address the automatic structured grid generation problem in an n‐sided region by fitting a planar Gregory patch so that the partition requirement is naturally avoided. However, self‐overlapping may occur in some portions of the algebraically generated grid; this severely limits its usage in most of engineering and scientific applications where a grid system with no self‐intersecting is strictly required. To solve the problem, we use a functional optimization approach to move grid nodes in the u?v domain of the trimmed surface to eliminate the self‐overlapping. The derivatives of a Gregory patch, which are extremely difficult to compute analytically, are not required in our method. Thus, our optimization algorithm compares favourably at least in terms of speed with some other mesh optimization algorithms, such as the elliptic PDE method. In addition, to overcome the difficulty of guessing a good initial position of every grid node for the conjugate gradient method, a progressive optimization algorithm is incorporated in our optimization. Experiment results are given to illustrate the usefulness and effectiveness of the presented method. Copyright © 2004 John Wiley & Sons, Ltd.     

A numerical method for the determination of weakly non‐hydrostatic non‐linear free surface wave propagation

A numerical method is described that may be used to determine the propagation characteristics of weakly non‐hydrostatic non‐linear free surface waves over a general, bottom topography. In shallow water of constant undisturbed depth, such waves are equivalent to the familiar cnoidal waves characterized by sharp crests and relatively flat troughs. For a certain range of parameters, these propagate without change of form by virtue of the weakly non‐hydrostatic balance in the vertical momentum equation. Effectively, this counters the tendency for the non‐linearity in a purely hydrostatic theory to lead to a continuously deforming surface wave profile. The realistic representation furnished by cnoidal wave theory of free surface waves in the shallow near‐shore zone has led to its utilization in evaluating their propagation characteristics. Nonetheless, the classic analytical theory is inapplicable to the case of wave propagation over a sloping beach or off‐shore sand bar topography. Under these conditions, a local change in form of the surface wave profile is anticipated before the waves break and knowing this is required in order to evaluate fully the propagation process. The efficacy of the numerical method is first demonstrated by comparing the solution for water of constant depth with the evaluation of the analytical solution expressed in terms of the Jacobian elliptic function cn. The general method described in the paper is then illustrated by experiments to determine the change in profile of weakly non‐hydrostatic non‐linear surface waves propagating over bed forms representative of those found in shallow coastal seas. Copyright © 2001 John Wiley & Sons, Ltd.