Chiral macrocycles,part II: Transport of amino acid Li+ salts

Complexation of amino acids in both their zwitterionic and Li⁺ salt forms by macrocycles, and carrier-mediated transport of the Li⁺ salts through a CH₂Cl₂ membrane have been investigated: the transport study of four amino acids by a new series of tetrapyrazolic macrocycles with functionalized sidearms shows wide variations of the transport rates depending on both the macrocyclic sidearm and the amino acid structure.     

Synthesis of macrocycles containing 1,3,4-oxadiazole and pyridine moieties

A series of peptide-like 25–28 membered macrocycles containing 1,3,4-oxadiazoles and pyridines bearing a chiral center scaffold have been synthesized by using known coupling reagents and common protecting groups. The yield of the purified macrocycles was poor on an average, yet it seems to be independent of amino acid substitution or stereochemistry. These macrocycles represent a new class of structures for further development and for future application in high-throughput screening against a variety of biological targets.     

Synthesis and characterisation of macrocycles containing both tetrazole and pyridine functionalities

The syntheses of tetra-tetrazole macrocycles containing at least one 2,6-bis(tetrazole)pyridine unit, linked by a variety of n-alkyl (n=3, 5, 7 or 9 carbon atoms) chain lengths, are described. There has been no previous incorporation of the pyridine moiety into a tetra-tetrazolophane macrocycle. The crystal structure of one such tetra-tetrazole macrocycle has also been structurally characterised and revealed a bowl-shaped conformation.     

Synthesis of nano-scale shape-persistent macrocycles via hydrogen bonding-promoted formation of amide and hydrazone bonds

This paper describes the synthesis of two series of rigid macrocycles from hydrogen bonding-induced folded aryl amide and hydrazone oligomers that bear two amines or one amine and one aldehyde. The diamines reacted with diacyl chloride to produce amide macrocycles, whereas the latter underwent self-coupling reactions to afford imine macrocycles. DFT calculations revealed that the new macrocycles possess rigid planar conformations and their cavity diameters were estimated to be 1.86 nm–2.75 nm.     

Solid support synthesis of 15-membered macrocycles containing a serotonin unit

Efficient assembly of 15-membered macrocycles utilizing the S_NAr of fluorine in 3-fluoro-4-nitrobenzoic acid with the OH functionality of serotonin on solid support is reported. This flexible synthesis yields a set of title macrocycles with good purity (>90%).     

Chiral macrocycles,part I: Synthesis and enantioselective transport of carboxylic acids as their Li+ salts

A new series of tetrapyrazolic macrocycles with a functionalized sidearm has been prepared. Their capability to transport Li⁺ salts of carboxylic acids has been examined and is shown to be strongly dependent on the functionality of the macrocycle sidearm. In the case of the Li⁺ (D, L.)-mandelate, chiral recognition has been observed.     

Expedient synthesis of benzene tricarboxamide macrocycles derived from p-aminobenzoic acid

The synthesis of macrocycles functionalized at the periphery in a regiospecific fashion is considered challenging. This Letter describes a six-step synthesis of N-alkylated benzene tricarboxamide macrocycles derived from p-aminobenzoic acid via the iterative coupling of Fmoc-protected monomers and cyclization of the resultant linear foldamers.     

Pyridine containing chiral macrocycles: synthesis and their enantiomeric recognition for amino acid derivatives

Four novel C₂-symmetric enantiomerically pure, chiral pyridine-18-crown-6 type macrocycles containing lipophilic chains at the stereogenic centers were prepared. The enantioselectivity of the new ligands toward the enantiomers of d-,l-amino acid methyl ester derivatives were also determined by ¹H NMR titration method. These novel macrocycles have been showed to be strong complexing agents for d- and l-amino acid methyl ester hydrochloride salts (with K_ass up to 13590 M⁻¹ and ?G⁰ up to 23.3 kJ mol⁻¹ and selectivity ratio: 80:20) by ¹H NMR titration methods. These macrocyclic hosts exhibited enantioselective binding towards the d-enantiomer of valine methyl ester hydrochloride with K_d/K_l up to 5.08 in CDCl₃ with 0.25% CD₃OD.     

Synthesis and characterisation of tetra-tetrazole macrocycles

The syntheses of tetra-tetrazole macrocycles, containing two bis-tetrazole units linked by a variety of alkyl-chain lengths from four to eight carbons, are described. The crystal structures of three of these derivatives are reported, and the molecular conformation in the solid state is compared to that of the previously reported tetra-tetrazole macrocycle and to other bis- and tris(tetrazole)benzene structures. The macrocycle conformation is influenced by the length of the alkyl-chain linker, the relative orientation of the tetrazole rings on the benzene ring and by intermolecular interactions. In the macrocycles based on 1,2-bis(tetrazole)benzene, the adjacent tetrazole rings on the benzene ring are prevented from becoming co-planar on intramolecular (steric) grounds. In the 1,3- and 1,4-bis(tetrazole)benzene derivatives, there is no such impediment, and a co-planar arrangement is observed where intra- and/or intermolecular stacking interactions exist. Deviations from co-planarity are associated with optimisation of intermolecular interactions between the tetrazole rings and adjacent alkyl chains. In the macrocycle based on 1,4-bis(tetrazole)benzene with four-carbon linkers, an intramolecular stacking interaction exists, which precludes the presence of any cavity. In the macrocycle based on 1,3-bis(tetrazole)benzene with six-carbon linkers, a cavity of 10.8×9.4 Å is observed for each molecule in the solid state, although the packing of adjacent molecules is such that there are no extended channels running through the crystal.     

Synthesis, characterization and crystal structure of a novel 3D network triorganotin(IV) polymer containing two types of macrocycles

A novel triorganotin(IV) complex 1 has been synthesized and structurally characterized by elemental analysis, FT-IR, NMR (¹H, ¹¹⁹Sn) spectra and X-ray crystallography. This complex displays a 3D network structure, which contains two types of chair form macrocycles.     

Synthesis and chiroptical properties of two new planar-chiral macrocycles

Could simple intraannular-arm macrocyclic systems exist in enantiopure stable forms? The effective synthesis of two representative compounds of such a class, their resolution into enantiomers, and experiments justifying their stability toward racemization are presented.     

Synthesis and biological evaluation of novel imidazole-containing macrocycles

A new family of compounds made of a 5-aryl-1H-imidazole motif included in a macrocycle has been designed and synthesized. The synthesis of the imidazole core makes use of our previously developed method for the regioselective preparation of 1,2,5-trisubstituted imidazoles while the construction of the macrocycle is based on a three steps sequence: S_NAr, Suzuki coupling, and RCM reaction. Biological evaluation of synthesized imidazole-containing macrocycles revealed that they display actual binding activity toward A₃ adenosine (h) receptor, dopamine D₁ (h) receptor, chloride channel (GABA-gated), and choline transporter (h) CHT1.     

A simple and efficient synthesis of boron-imidazole macrocycles and their crystal structures

A simple and selective method for the synthesis of boron-imidazole macrocycles is described and their X-ray structures are presented.     

Role of amino acid N-methylation in cyclosporins on ring opening and fragmentation mechanisms during collisionally induced dissociation in an ion trap

The product ion mass spectra (collisionally induced dissociation mass spectra) of 12 different cyclosporins modified at every N-methylated amino acid residue with respect to cyclosporin A were compared and the effect of N-demethylation on ring opening mechanisms was evaluated. The four preferential protonation sites were identified in [MeBmt(1)]-cyclosporins. Three sites represented the N-methylated nitrogens of Sar(3), MeLeu(6) and MeLeu(9), while the remaining one represented the lactone group formed by the intramolecular N,O-acyl shift. Selective N-demethylation resulted either in the deletion of the entire fragment ion series or its substantial attenuation. The structures of three new natural cyclosporins in the study were supported by NMR data.     

Direct analysis of 15N-label in amino and amide groups of glutamine and asparagine

A novel method for on-line determination of the amount and position of 15N-labeling in complex mixtures of amino acids is presented. Underivatized amino acids were analyzed by ion-pair chromatography in combination with mass spectrometry. This enables the direct determination of the 15N label distribution. The fragmentation pathways of the nitrogen moieties of glutamine (Gln) and asparagine (Asn) were studied in detail using all mono 15N isotopomers, which led to a method for differentiating between 15N-amide and 15N-amino labeling. The fragmentation involving the amino and amide groups of Gln led to distinct ion structures. The equivalent fragmentation pattern was not observed for Asn. Instead, the amide group of Asn was eliminated as HNCO in a secondary process. The developed analytical method was evaluated by analysis of a range of standard mixtures taking into account different levels of 15N abundance and distribution between the amino and amide groups. The detection limit (3 SD) for the presence of a 15N label was 0.7 and 1.0% for Gln and Asn, respectively. The determination of the positional labeling follows a nonlinear function. A representative example at 30% 15N was used as a benchmark resulting in average relative standard deviations of 2.7 and 15% for Gln and Asn, respectively. The corresponding expectation windows for the positional labeling were found to be 2 and 12%, respectively.     

Cyclic peptides containing a δ-sugar amino acid—synthesis and evaluation as artificial receptors

An Fmoc-protected δ-sugar amino acid, prepared by oxidation of a glucosamine derivative, was coupled to three different tripeptide tert-butyl esters (H-Tyr-Tyr-Tyr-O^tBu, H-Tyr-Glu(OBzl)-Tyr-O^tBu and H-Tyr-Arg(Mtr)-Tyr-O^tBu) and the resulting sugar amino acid/amino acid hybrids were transformed into dimers that were subsequently cyclized to give three C₂-symmetric macrocycles. The macrocycles were deprotected and their binding properties towards p-nitrophenyl glycosides, nucleotides, and purines were examined. Of the ligands screened, only some of the purines showed weak, but significant, binding.     

Concept and synthetic approach for a kilogram scale synthesis of octa-d-arginine amide nonahydrochloride salt

Oligomers of arginine, such as octa-d-arginine amide, are excellent transporters for active drugs through cell membranes and tissue. The synthesis of octa-d-arginine amide, as the nonahydrochloride salt, was approached via a solution phase synthetic route involving the preparation of an octa-d-ornithine intermediate, which was then converted into the desired octa-d-arginine compound through a guanidinylation step. The multi-step synthesis was carried out at pilot scale, resulting in the preparation of 700 g of the target molecule. No chromatographic purification was needed at any step of the process.     

Evaluation of protein quantification using standard peptides containing single conservative amino acid replacements

Structural analogs are evaluated as peptide internal standards for protein quantification with liquid chromatography‐multiple reaction monitoring mass spectrometry (LC‐MRM); specifically, single conservative amino acid replacements (SCAR) are performed to create tagged standards that differ by the addition or subtraction of a single methylene group in one amino acid side chain. Because the performance of stable isotope‐labeled standards (SIS) has been shown to be superior to structural analogs, differences in both development and quantitative performance between assays based on SIS and SCAR peptides are explored. To establish an assay using the structural analogs, analysis of endogenous, SCAR and SIS peptides was performed to examine their ion signal, fragmentation patterns and response in LC‐MRM. Performance of SCAR and SIS peptides was compared for quantification of epidermal growth factor receptor from lung cancer cell lysates and immunoglobulin M in the serum of multiple myeloma patients. Copyright © 2012 John Wiley & Sons, Ltd.     

Regio- and stereoselective synthesis of spiro-pyrrolidine/pyrrolizidine/thiazolidine-grafted macrocycles through intramolecular 1,3-dipolar cycloaddition reaction

Regioselective synthesis of spiropyrrolidine-grafted 11-membered macrocycle was accomplished through an intramolecular [3+2] cycloaddition of azomethine ylides. The key precursor alkenyl diketone (4a–b) was obtained from simple starting materials. The dipole generated from isatin tethered to O-alkyl enone (4a–b) was reacted intramolecularly to yield the spiropyrrolidine-grafted macrocycles (6a–b). The structures of the cycloadducts were assigned by 2D NMR and confirmed by single crystal analysis.