A multilevel approach for nonnegative matrix factorization

Nonnegative matrix factorization (NMF), the problem of approximating a nonnegative matrix with the product of two low-rank nonnegative matrices, has been shown to be useful in many applications, such as text mining, image processing, and computational biology. In this paper, we explain how algorithms for NMF can be embedded into the framework of multilevel methods in order to accelerate their initial convergence. This technique can be applied in situations where data admit a good approximate representation in a lower dimensional space through linear transformations preserving nonnegativity. Several simple multilevel strategies are described and are experimentally shown to speed up significantly three popular NMF algorithms (alternating nonnegative least squares, multiplicative updates and hierarchical alternating least squares) on several standard image datasets.     

Algorithms for nonnegative matrix and tensor factorizations: a unified view based on block coordinate descent framework

We review algorithms developed for nonnegative matrix factorization (NMF) and nonnegative tensor factorization (NTF) from a unified view based on the block coordinate descent (BCD) framework. NMF and NTF are low-rank approximation methods for matrices and tensors in which the low-rank factors are constrained to have only nonnegative elements. The nonnegativity constraints have been shown to enable natural interpretations and allow better solutions in numerous applications including text analysis, computer vision, and bioinformatics. However, the computation of NMF and NTF remains challenging and expensive due the constraints. Numerous algorithmic approaches have been proposed to efficiently compute NMF and NTF. The BCD framework in constrained non-linear optimization readily explains the theoretical convergence properties of several efficient NMF and NTF algorithms, which are consistent with experimental observations reported in literature. In addition, we discuss algorithms that do not fit in the BCD framework contrasting them from those based on the BCD framework. With insights acquired from the unified perspective, we also propose efficient algorithms for updating NMF when there is a small change in the reduced dimension or in the data. The effectiveness of the proposed updating algorithms are validated experimentally with synthetic and real-world data sets.     

Nonnegative Matrix Factorization based on the Geometry of Positive Numbers

We consider the problem of nonnegative matrix factorization where the typical objective function is altered based on geometrical arguments. A noneuclidean geometry on positive real numbers is used to describe the nonnegative entries of a nonnegative matrix, influencing the factorization model. We design an optimization procedure from a differential geometric point of view for the newly proposed model. (© 2015 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

完全正矩阵的整数分解

n阶矩阵A称为完全正的,如果A有分解:A=BB^T,其中B为元素非负矩阵,B的最小可能列数称为A的分解指数.本文考察低阶双非负矩阵在整数环上的完全正分解及其分解指数.     

Possible numbers of positive entries of imprimitive nonnegative matrices

Zhan, X., Extremal numbers of positive entries of imprimitive nonnegative matrix, Linear Algebra Appl. (in press) has determined the maximum and minimum numbers of positive entries of imprimitive irreducible nonnegative matrices with a given imprimitivity index. Let σ( A ) denote the number of positive entries of a matrix A. Let M(n,?k) and m(n,?k) denote the maximum and minimum numbers of positive entries of imprimitive irreducible nonnegative matrices of order n with a given imprimitivity index k, respectively. In this article, we prove that for any positive integer d with m(n,k)≤ d?≤?M(n,k), there exists an n?×?n irreducible nonnegative matrix A with imprimitivity index k such that?σ?(A)=d.     

数据缺损矩阵低秩分解的正则化方法

数据缺损下矩阵低秩逼近问题出现在许多数据处理分析与应用领域. 由于极高的元素缺损率,数据缺损下的矩阵低秩逼近呈现很大的不适定性, 因而寻求有效的数值算法是一个具有挑战性的课题. 本文系统完整地综述了作者近期在这方面的一些研究进展, 给出了基本模型问题的不适定性理论分析, 提出了两种新颖的正则化方法: 元素约束正则化和引导正则化, 分别适用于中等程度的数据缺损和高度元素缺损的矩阵低秩逼近. 本文同时也介绍了相应快速有效的数值算法. 在一些实际的大规模数值例子中, 这些新的正则化算法均表现出比现有其他方法都好的数值特性.     

Solving a low-rank factorization model for matrix completion by a nonlinear successive over-relaxation algorithm

The matrix completion problem is to recover a low-rank matrix from a subset of its entries. The main solution strategy for this problem has been based on nuclear-norm minimization which requires computing singular value decompositions??a task that is increasingly costly as matrix sizes and ranks increase. To improve the capacity of solving large-scale problems, we propose a low-rank factorization model and construct a nonlinear successive over-relaxation (SOR) algorithm that only requires solving a linear least squares problem per iteration. Extensive numerical experiments show that the algorithm can reliably solve a wide range of problems at a speed at least several times faster than many nuclear-norm minimization algorithms. In addition, convergence of this nonlinear SOR algorithm to a stationary point is analyzed.     

Factorization of analytic functions by means of Koenig's theorem and Toeplitz computations

Summary. By providing a matrix version of Koenig's theorem we reduce the problem of evaluating the coefficients of a monic factor r(z) of degree h of a power series f(z) to that of approximating the first h entries in the first column of the inverse of an Toeplitz matrix in block Hessenberg form for sufficiently large values of n. This matrix is reduced to a band matrix if f(z) is a polynomial. We prove that the factorization problem can be also reduced to solving a matrix equation for an matrix X, where is a matrix power series whose coefficients are Toeplitz matrices. The function is reduced to a matrix polynomial of degree 2 if f(z) is a polynomial of degreeN and . These reductions allow us to devise a suitable algorithm, based on cyclic reduction and on the concept of displacement rank, for generating a sequence of vectors that quadratically converges to the vector having as components the coefficients of the factor r(z). In the case of a polynomial f(z) of degree N, the cost of computing the entries of given is arithmetic operations, where is the cost of solving an Toeplitz-like system. In the case of analytic functions the cost depends on the numerical degree of the power series involved in the computation. From the numerical experiments performed with several test polynomials and power series, the algorithm has shown good numerical properties and promises to be a good candidate for implementing polynomial root-finders based on recursive splitting strategies. Applications to solving spectral factorization problems and Markov chains are also shown. Received September 9, 1998 / Revised version received November 14, 1999 / Published online February 5, 2001     

Projected Landweber iteration for matrix completion

Recovering an unknown low-rank or approximately low-rank matrix from a sampling set of its entries is known as the matrix completion problem. In this paper, a nonlinear constrained quadratic program problem concerning the matrix completion is obtained. A new algorithm named the projected Landweber iteration (PLW) is proposed, and the convergence is proved strictly. Numerical results show that the proposed algorithm can be fast and efficient under suitable prior conditions of the unknown low-rank matrix.     

Nonnegative rank-preserving operators

Analogues of characterizations of rank-preserving operators on field-valued matrices are determined for matrices witheentries in certain structures $\text{S}$ contained in the nonnegative reals. For example, if $\text{S}$ is the set of nonnegative members of a real unique factorization domain (e.g. the nonnegative reals or the nonnegative integers), M is the set of m×n matrices with entries in $\text{S}$, and min(m,n)?4, then a “linear” operator on M preserves the “rank” of each matrix in M if and only if it preserves the ranks of those matrices in M of ranks 1, 2, and 4. Notions of rank and linearity are defined analogously to the field-valued concepts. Other characterizations of rank-preserving operators for matrices over these and other structures $\text{S}$ are also given.     

求解低秩矩阵恢复问题的非单调交替梯度方向法

低秩矩阵恢复问题作为一类在图像处理和信号数据分析等领域中都十分重要的问题已被广泛研究.本文在交替方向算法的框架下,应用非单调技术,提出一种求解低秩矩阵恢复问题的新算法.该算法在每一步迭代过程中,首先利用一步带有变步长梯度算法同时更新低秩部分的两块变量,然后采用非单调技术更新稀疏部分的变量.在一定的假设条件下,本文证明了...     

A fast algorithm for computing the smallest eigenvalue of a symmetric positive‐definite Toeplitz matrix

Recent progress in signal processing and estimation has generated considerable interest in the problem of computing the smallest eigenvalue of a symmetric positive‐definite (SPD) Toeplitz matrix. An algorithm for computing upper and lower bounds to the smallest eigenvalue of a SPD Toeplitz matrix has been recently derived (Linear Algebra Appl. 2007; DOI: 10.1016/j.laa.2007.05.008 ). The algorithm relies on the computation of the R factor of the QR factorization of the Toeplitz matrix and the inverse of R. The simultaneous computation of R and R^?1 is efficiently accomplished by the generalized Schur algorithm. In this paper, exploiting the properties of the latter algorithm, a numerical method to compute the smallest eigenvalue and the corresponding eigenvector of SPD Toeplitz matrices in an accurate way is proposed. Copyright © 2008 John Wiley & Sons, Ltd.     

Nonnegative rank factorization—a heuristic approach via rank reduction

Given any nonnegative matrix $A \in \mathbb{R}^{m \times n}$ , it is always possible to express A as the sum of a series of nonnegative rank-one matrices. Among the many possible representations of A, the number of terms that contributes the shortest nonnegative rank-one series representation is called the nonnegative rank of A. Computing the exact nonnegative rank and the corresponding factorization are known to be NP-hard. Even if the nonnegative rank is known a priori, no simple procedure exists presently that is able to perform the nonnegative factorization. Based on the Wedderburn rank reduction formula, this paper proposes a heuristic approach to tackle this difficult problem numerically. Starting with A, the idea is to recurrently extrat, whenever possible, a rank-one nonnegative portion from the previous matrix while keeping the residual nonnegative and lowering its rank by one. With a slight modification for symmetry, the method can equally be applied to another important class of completely positive matrices. No convergence can be guaranteed, but repeated restart might help alleviate the difficulty. Extensive numerical testing seems to suggest that the proposed algorithm might serve as a first-step numerical means for exploring the intriguing problem of nonnegative rank factorization.     

Finding off‐diagonal entries of the inverse of a large symmetric sparse matrix

The method fast inverse using nested dissection (FIND) was proposed to calculate the diagonal entries of the inverse of a large sparse symmetric matrix. In this paper, we show how the FIND algorithm can be generalized to calculate off‐diagonal entries of the inverse that correspond to ‘short’ geometric distances within the computational mesh of the original matrix. The idea is to extend the downward pass in FIND that eliminates all nodes outside of each node cluster. In our advanced downwards pass, it eliminates all nodes outside of each ‘node cluster pair’ from a subset of all node cluster pairs. The complexity depends on how far (i,j) is from the main diagonal. In the extension of the algorithm, all entries of the inverse that correspond to vertex pairs that are geometrically closer than a predefined length limit l will be calculated. More precisely, let α be the total number of nodes in a two‐dimensional square mesh. We will show that our algorithm can compute O(α^{3 ∕ 2 + 2ε}) entries of the inverse in O(α^{3 ∕ 2 + 2ε}) time where l = O(α^{1 ∕ 4 + ε}) and 0 ≤ ε ≤1 ∕ 4. Numerical examples are given to illustrate the efficiency of the proposed method. Copyright © 2012 John Wiley & Sons, Ltd.     

Multidimensional butterfly factorization

This paper introduces the multidimensional butterfly factorization as a data-sparse representation of multidimensional kernel matrices that satisfy the complementary low-rank property. This factorization approximates such a kernel matrix of size $N\times N$ with a product of $O(\log ?N)$ sparse matrices, each of which contains $O(N)$ nonzero entries. We also propose efficient algorithms for constructing this factorization when either (i) a fast algorithm for applying the kernel matrix and its adjoint is available or (ii) every entry of the kernel matrix can be evaluated in $O(1)$ operations. For the kernel matrices of multidimensional Fourier integral operators, for which the complementary low-rank property is not satisfied due to a singularity at the origin, we extend this factorization by combining it with either a polar coordinate transformation or a multiscale decomposition of the integration domain to overcome the singularity. Numerical results are provided to demonstrate the efficiency of the proposed algorithms.     

Nonnegative inverse eigenvalue problems with partial eigendata

In this paper we consider the inverse problem of constructing an n × n real nonnegative matrix A from the prescribed partial eigendata. We first give the solvability conditions for the inverse problem without the nonnegative constraint and then discuss the associated best approximation problem. To find a nonnegative solution, we reformulate the inverse problem as a monotone complementarity problem and propose a nonsmooth Newton-type method for solving its equivalent nonsmooth equation. Under some mild assumptions, the global and quadratic convergence of our method is established. We also apply our method to the symmetric nonnegative inverse problem and to the cases of prescribed lower bounds and of prescribed entries. Numerical tests demonstrate the efficiency of the proposed method and support our theoretical findings.     

The g-theorem matrices are totally nonnegative

The g-theorem proved by Billera, Lee, and Stanley states that a sequence is the g-vector of a simplicial polytope if and only if it is an M-sequence. For any d-dimensional simplicial polytope the face vector is gMd where Md is a certain matrix whose entries are sums of binomial coefficients. Björner found refined lower and upper bound theorems by showing that the (2×2)-minors of Md are nonnegative. He conjectured that all minors of Md are nonnegative and that is the result of this note.     

Bounds on the inverses of nonnegative triangular matrices with monotonicity properties

Some bounds on the entries and on the norm of the inverse of triangular matrices with nonnegative and monotone entries are found. All the results are obtained by exploiting the properties of the fundamental matrix of the recurrence relation which generates the sequence of the entries of the inverse matrix. One of the results generalizes a theorem contained in a recent article of one of the authors about Toeplitz matrices.     

Local reconstruction of low‐rank matrices and subspaces

We study the problem of reconstructing a low‐rank matrix, where the input is an n × m matrix M over a field and the goal is to reconstruct a (near‐optimal) matrix that is low‐rank and close to M under some distance function Δ. Furthermore, the reconstruction must be local, i.e., provides access to any desired entry of by reading only a few entries of the input M (ideally, independent of the matrix dimensions n and m). Our formulation of this problem is inspired by the local reconstruction framework of Saks and Seshadhri (SICOMP, 2010). Our main result is a local reconstruction algorithm for the case where Δ is the normalized Hamming distance (between matrices). Given M that is ‐close to a matrix of rank (together with d and ), this algorithm computes with high probability a rank‐d matrix that is ‐close to M. This is a local algorithm that proceeds in two phases. The preprocessing phase reads only random entries of M, and stores a small data structure. The query phase deterministically outputs a desired entry by reading only the data structure and 2d additional entries of M. We also consider local reconstruction in an easier setting, where the algorithm can read an entire matrix column in a single operation. When Δ is the normalized Hamming distance between vectors, we derive an algorithm that runs in polynomial time by applying our main result for matrix reconstruction. For comparison, when Δ is the truncated Euclidean distance and , we analyze sampling algorithms by using statistical learning tools. A preliminary version of this paper appears appears in ECCC, see: http://eccc.hpi-web.de/report/2015/128/ © 2017 Wiley Periodicals, Inc. Random Struct. Alg., 51, 607–630, 2017     

On the eigenvalues of double band matrices

We consider matrices containing two diagonal bands of positive entries. We show that all eigenvalues of such matrices are of the form rζ, where r is a nonnegative real number and ζ is a pth root of unity, where p is the period of the matrix, which is computed from the distance between the bands. We also present a problem in the asymptotics of spectra in which such double band matrices are perturbed by banded matrices.