Effects of polymer aggregation and quencher size on amplified fluorescence quenching of conjugated polyelectrolytes

The fluorescence of conjugated polyelectrolytes (CPEs) is efficiently quenched by low concentrations of quenchers with opposite charges. We have reported the close correlation between this amplified quenching phenomenon and CPE chain aggregation. In this paper, we further demonstrate the profound correlation between the fluorescence quenching efficiency, CPE chain aggregation, and quencher molecular size. Aggregation of a poly(phenylene ethynylene)-type CPE (PPE-CO2-) is induced by the addition of either water or Ca2+ to methanol solution, as indicated by absorption, fluorescence, dynamic light scattering, and fluorescence microscope measurements. For quencher ions with a small molecular size, such as methyl viologen (MV2+), either the loose (induced by the addition of Ca2+) or the compact (induced by the addition of water) CPE chain aggregates are beneficial to the fluorescence quenching. For quencher ions with large molecular size, such as tris(4,7-diphenyl-1,10-phenanthroline)ruthenium (Ru(dpp)32+), however, the loose chain aggregates are found to be favorable for quenching, while the quenching efficiency is lower for the compact polymer aggregates present in aqueous solution.     

Enhanced conjugated polymer fluorescence quenching by dipyridinium-based quenchers in the presence of surfactant

Poly[(2-methoxy-5-propyloxysulfonate)phenylene vinylene] (MPS-PPV) was synthesized directly from its bischloromethylated monomer, considerably reducing the total number of steps involved in the polymer preparation. For the first time, a simple technique of ultracentrifugation was employed for final purification of the polymer. The interactions among the polymer, surfactant, and quencher molecules, as well as amplified fluorescence quenching and fluorescence enhancement associated with the interactions, were investigated and discussed. When compared with methyl viologen [MV]2+, higher values of Stern-Volmer constant K(SV) values on the order of > or =10(7) M(-1) were observed for the newly synthesized N-(2-carboxyhexadecanoyl)-N'-methyl-4,4'-bipyridinium iodide bromide ([CHMB]2+) quencher in the presence of 1,2-dioleoyl-3- trimethylammonium propane (DOTAP) surfactant. Comparisons of surfactants demonstrated that the K(SV) of [CHMB]2+ was 10-fold higher in the presence of dodecyltrimethylammonium bromide (DTAB) surfactant than with DOTAP. Polymer fluorescence was totally recovered upon addition of DOTAP surfactant to a MV-quenched polymer system, whereas only 50% of fluorescence was recovered upon addition of DOTAP surfactant to the CHMB-quenched polymer solution. In contrast, no fluorescence was recovered when DTAB was added to either the MV- or CHMB-quenched polymer systems. Thus, fluorescence enhancement was observed for the polymer complex with DOTAP, whereas fluorescence quenching was predominant in the polymer complex with DTAB. Such studies will not only help to better understand the intrinsic properties of the ionic conjugated polymer and amplified fluorescence quenching and enhancement but also provide guidelines to develop the next generation of ionic conjugated-polymer-based biosensors.     

Dependence of fluorescence quenching of a poly(p-phenyleneethynylene) polyelectrolyte on the electrostatic and hydrophobic properties of the quencher

This study investigates the fluorescence quenching of a poly(p-phenyleneethynylene) (1) based polyelectrolyte by positively charged and neutral macromolecules. This work shows that the change in the fluorescence yield of 1 depends on a number of factors, including electrostatic, hydrophobic, and energy transfer interactions with the quencher and also changes in the solution conditions such as concentration and ionic strength. The fluorescence quenching is attributed to the formation of aggregates that form upon addition of different quenchers to a solution of 1 and/or the solution conditions. The extent of 1's aggregation is shown to depend on the type of interaction between the polymer and the quencher, the concentration of the polymer, and the ionic strength of the solution.     

A real-time fluorogenic phospholipase A(2) assay for biochemical and cellular activity measurements

A fluorogenic analog of the PLA(2) substrate PC, named Dabcyl-BODIPY-PC, or simply DBPC, was synthesized with a fluorescence quencher (Dabcyl, 4-[(4-[N,N-dimethylamino]phenyl)azo]benzoic acid) in the sn-1 acyl chain and a BODIPY fluor in the sn-2 acyl chain. DBPC was recognized by sPLA(2) from each of the four sources examined (bee venom, human synovial fluid, cobra venom, and bovine pancreas). A dramatic and quantifiable fluorescence enhancement of DBPC occurred upon phospholipase digestion both in the presence and absence of excess PC. Both real-time and endpoint assays for PLA(2) were sensitive, consistent, and rapid. Thus, DBPC can be used as a sensitive fluorogenic probe for in vitro high-throughput screening assays for PLA(2) activation and inhibition and would expedite studies of PLA(2) in cellular signaling, in vitro screening for drug discovery, and subcellular localization of enzyme activity.     

荧光淬灭法研究疏水缔合共聚物(PAM-b-PPOEA)_n自组装聚集数

运用荧光淬灭技术,包括稳态荧光淬灭法(SSFQ)和时间分辨荧光淬灭法(TRFQ),研究了疏水缔合水溶性丙烯酰胺2苯氧基丙烯酸酯多嵌段共聚物[P(AM POEA)]在水溶液中自组装的聚集数.这类聚合物在水溶液中易形成胶束状聚集体,探针芘分子和淬灭剂二苯酮增溶于疏水微区,荧光测定结果很好地符合Poisson淬灭模型.实验结果表明聚合物链结构、聚合物浓度和无机盐对聚集体的尺寸具有重要影响.聚合物自组装聚集数NA随疏水单体含量的增加和疏水嵌段长度的减小而增大,同时也随聚合物浓度和NaCl浓度增加而增大.另外对聚合物链结构、聚集数和溶液粘度的相互关系进行了讨论.     

Solvent- and pH-induced self-assembly of cationic meta-linked poly(phenylene ethynylene): effects of helix formation on amplified fluorescence quenching and Förster resonance energy transfer

We reported here the synthesis and characterization of a novel water-soluble, meta-linked poly(phenylene ethynylene) (m-PPE-NEt(2)Me(+)) featuring quaternized side groups. We studied the solvent-induced self-assembly of m-PPE-NEt(2)Me(+) in MeOH/H(2)O solvent mixtures by using UV-vis absorption and fluorescence spectroscopies. The results showed that the polymer folded into a helical conformation and that the extent of helical folding increased with the volume % water in the solvent. This cationic polymer also exhibited unique pH-induced helix formation, which was attributed to the partial neutralization of quaternized side groups at high pH and the meta-links in the main chain of the polymer. Studies on the fluorescence quenching of m-PPE-NEt(2)Me(+) by anthraquinone-2,6-disulfonate (AQS) and Fe(CN)(6)(4-), two small-molecule anionic quenchers with different typical structures, revealed more efficient quenching of helical conformation by AQS than by Fe(CN)(6)(4-). We proposed that the two quenchers most likely interacted with the polymer helix in two different modes; that was, AQS featuring large planar aromatic ring could intercalate within adjacent π-stacked phenylene ethynylene units in the polymer helix, whereas Fe(CN)(6)(4-) mainly bound to the periphery of polymer helix through ion-pair formation. Finally, the results of FRET from the helical polymer to the fluorescein (C*)-labeled polyanions, ssDNA-C* (ssDNA: single-stranded DNA) and dsDNA-C* (dsDNA: double-stranded DNA) also suggested two different modes of interactions. As compared with the FRET to dsDNA-C*, the FRET to ssDNA-C* was slightly more efficient, which was believed to arise from the additional binding of ssDNA-C* with the polymer via intercalation of its exposed hydrophobic bases into the π stack of adjacent phenylene ethynylene units in the polymer helix.     

A new ion sensor based on fiber optics

A fluorimetric ion sensor based on fiber optics has been developed that employs Rhodamine 6G hydrophobically and electrostatically "trapped" on a Nafion film. The sensor is based on the measurement of quenching or enhancement of the Rhodamine 6G fluorescence by various ions. It was found that ions such as Co(2+), Cr(3+), Fe(2+), Fe(3+), Cu(2+), Ni(2+) and NH(+)(4) rapidly quench the Rhodamine 6G fluorescence at an initial rate that depends on the concentration of the ion. This quenching is then readily reversed by the addition of "reverser" ions such as H(+), Li(+), Na(+), K(+), Ba(2+), Ca(2+), Mn(2+), Zn(2+) and Mg(2+). Again, the initial rate for the attainment of the original fluorescence was found to depend on the concentration of the reverser ion. Therefore, by monitoring the quenching directly the concentration of quencher ions can be determined. In addition, by loading the film with quencher and monitoring the initial rate of return towards the original baseline signal, it is possible to determine non-quenching ions.     

Fluorescence blinking, exciton dynamics, and energy transfer domains in single conjugated polymer chains

In order to understand exciton migration and fluorescence intensity fluctuation mechanisms in conjugated polymer single molecules, we studied fluorescence decay dynamics at "on" and "off" fluorescence intensity levels with 20 ps time resolution using MEH-PPV [poly(2-methoxy-5-(2'-ethylhexyloxy)-1,4-phenylenevinylene] dispersed in PMMA. Two types of intensity fluctuations were distinguished for single chains of conjugated polymers. Abrupt intensity fluctuations (blinking) were found to be always accompanied by corresponding changes in fluorescence lifetime. On the contrary, during "smooth" intensity fluctuations no lifetime change was observed. Time-resolved data in combination with data on fluorescence emission and excitation anisotropy lead to a picture where a single polymer molecule is seen as consisting of several energy transfer domains. Exciton migration is efficient within a domain and not efficient between domains. Each domain can have several emitting low-energy sites over which the exciton continuously migrates until it decays. Emission of individual domains is often highly polarized. Fluorescence from a domain can be strongly quenched by Forster energy transfer to a quencher (hole polaron) if the domain overlaps with the quenching sphere.     

Photophysics of anthracene-indole systems in unilamellar vesicles of DMPC and POPC: Exciplex formation and temperature effects

The quenching of anthracene fluorescence by indole (IN), 1,2-dimethylindole (DMI), tryptophan (Trp) and indole 3-acetic acid (IAA) in dimiristoylphophatidylcholine (DMPC) and palmitoyloleoylphosphatidylcholine (POPC) lipid bilayers was investigated. The studies were carried out at 25 degrees C in POPC vesicles and below (15 degrees C) and above (35 degrees C) the phase transition temperature (24 degrees C) of DMPC. A very efficient quenching of the anthracene fluorescence by IN and DMI in the lipid membrane is observed in all cases. It is less efficient in the case of Trp and IAA. Stern-Volmer plots are linear for DMI but present a downward curvature for the other quenchers. This was interpreted as an indication of the presence of an inaccessible fraction of anthracene molecules. By a modified Stern-Volmer analysis the fraction accessible to the quenchers and the quenching constant were determined. Partition constants of the quenchers were obtained from the changes in the fluorescence emission of the indole moiety caused by the presence of the phospholipid. Using the partition constants bimolecular quenching rate constants were determined in terms of the local concentration of quencher in the lipid bilayer. These corrected rate constants are lower than those in homogeneous solvents. In the case of DMPC values the gel phase are higher than in the liquid-crystalline phase. In the quenching by IN and DMI a new, red shifted, emission band appears which could be assigned to an exciplex emission. The exciplex band is absent in the quenching by IAA and Trp.     

THE TRANSVERSE LOCATION OF FLUOROPHORES IN LIPID BILAYERS AND MICELLES AS DETERMINED BY FLUORESCENCE QUENCHING TECHNIQUES

Abstract— A fluorescence quenching technique has been used to determine the absolute partition coefficients of a set of n -doxyl stearates which partition between the aqueous and lipid phases of a phospholipid dispersion, and it is shown that the values of the coefficients vary in a systematic way depending on the position of the doxyl group on the acyl chain of the fatty acid. The n -doxyl stearates quench the fluorescence of n -(9-anthroyloxy) fatty acids in lipid bilayers, and consideration of the absolute partition coefficients of the quencher and of the microviscosity of the bilayer is necessary to extract information about the proximity of the fluorophore and quencher. In addition, quenching of the fluorescent fatty acids with a quencher which is small relative to the width of the lipid bilayer allows determination of both the absolute and local partition coefficients, the latter referring to a subvolume of the bilayer within which quenching occurs. The relationship between absolute and local partition coefficients is defined for micelles and bilayers and a method for determining the relative transverse positions of the anthroyloxy rings in these structures is described.     

Spectroscopic study on the interaction between sodium 9,10-anthraquinone-2-sulfonate and DNA

Sodium 9,10-anthraquinone-2-sulfonate (AQS) binds to the double helical DNA with a high affinity, as deduced from the absorption and fluorescence spectral data. The results of absorption spectra, KI quenching studies, competitive binding studies, and thermal denaturation experiments suggested the intercalative binding of AQS into DNA bases.     

Fluorescence quenching of anthracene by indole derivatives in phospholipid bilayers

The quenching of anthracene fluorescence by indole, 1,2-dimethylindole (DMI), tryptophan (Trp) and indole 3-acetic acid (IAA) in palmitoyloleoylphosphatidylcholine (POPC) lipid bilayers was investigated. A very efficient quenching of the anthracene fluorescence in the lipid membrane is observed. Stern-Volmer plots are linear for DMI but present a downward curvature for the other quenchers. This was interpreted as an indication of the presence of an inaccessible fraction of anthracene molecules. By a modified Stern-Volmer analysis the fraction accessible to the quenchers and the quenching constant were determined. The changes in the fluorescence emission spectrum of indole and DMI have been used to calculate the partition constants of these probes into the membranes, and bimolecular quenching rate constants were determined in terms of the local concentration of quencher in the lipid bilayer. The rate constants are lower than those in homogeneous solvents, which may be ascribed to a higher viscosity of the bilayer. No changes in the emission spectra of Trp and IAA are observed in the presence of vesicles, indicating that these probes locate preferentially in the aqueous phase, or in close proximity to the vesicular external interface in a medium resembling pure water. In these cases quenching rate constants were determined in terms of the analytical concentration. In the quenching by DMI a new, red shifted, emission band appears; it is similar to that observed in non-polar solvents and it is ascribable to an exciplex emission. The exciplex band is absent in the quenching by IAA and Trp and only very weakly present when the quencher is indole. From the position of the maximum of the exciplex emission, a relatively high local polarity could be estimated for the region of the bilayer where the quenching reaction takes place.     

Perturbation of fluorescence by nonspecific interactions between anionic poly(phenylenevinylene)s and proteins: implications for biosensors

The use of anionic water-soluble conjugated polymers (CPs) for sensing the presence of avidin by use of a biotin-modified fluorescence quencher was studied. The molecules involved in the study included poly[2-methoxy-5-(3'-propyloxysulfonate)-1,4-phenylenevinylene] with either lithium (Li+-MPS-PPV) or sodium (Na(+)-MPS-PPV) countercations, the well-defined oligomer pentasodium 1,4-bis(4'(2",4"-bis(butoxysulfonate)-styryl)-styryl)2-butoxysulfonate-5-methoxybenzene (5R5-), the quenchers N-methyl-4,4'-pyridylpyridinium iodide (mMV+) and [N-(biotinoyl)-N'-(acetyl 4,4'-pyridylpyridinium iodide)] ethylenediamine (BPP+), which contains a molecular recognition fragment (biotin) attached to a unit that accepts an electron from a CP excited state, and the proteins avidin, tau, BSA, and pepsin A. Fluorescence quenching experiments were examined in a variety of conditions. Experiments carried out in water and in ammonium carbonate buffer (which ensures avidin/biotin complexation) reveal that nonspecific interactions between the CP and the proteins cause substantial perturbations on the CP fluorescence. The overall findings are not consistent with a simple mechanism whereby avidin complexation of BPP+ leads to encapsulation of the quencher molecule and recovery of Li+-MPS-PPV fluorescence. Instead, we propose that binding of BPP+ to avidin results in the quenching unit attaching to a positively charged macromolecule. Electrostatic attraction to the negatively charged conjugated polymer results in closer proximity to the quencher. Therefore, more enhanced fluorescence quenching is observed.     

A study of molecular diffusion in alcohol—water solution of poly-4-vinylpyridine by fluorescence quenching

Intra- and intermolecular diffusion processes in alcohol—water solutions of poly-4-vinylpyridine (PVPy) were studied by the fluorescence quenching method. It was prepared fluorescent-labelled PVPy (PVPy-F) by copolymerizing 4-vinylpyridine with anthrylmethylmethacrylate (F) (one chromophore group per 500 chain links in the copolymer). PVPy carrying both the chromophore and quenching chain links (quaternization of the pyridine residue by dimethylsulphate) (PVPy-FQ) and PVPy carrying only the quenchers (PVPy-Q).Measurement of the mean lifetime of the excited state of the anthracene group for the polymers and for the monomer analogue (F) with increasing quencher concentration and use of the Stern-Volmer relation permit determination of the constants of bimolecular collisions between the monomer quencher (Q) (4-ethyl-N-methyl pyridinium sulphate) and F, between the monomer quencher and PVPy-F and between Q and F incorporated in the same polymer chain (PVPy-FQ). The values of the diffusion constant for the system of PVPy-F and Q and for the system of PVPy-FQ are approximately two and four times respectively less than that for the monomer pair (F + Q). For the latter system, the finding indicates some hindrance to the diffusion of the chain links with each other within the coil. Nevertheless, their mobility remains high and probably microdiffusion will not limit chemical reactions of functional groups within coils and with monomer molecules.In studying the fluorescence quenching of the chromophore for PVPy-F in the presence of the polymer quencher, it was found that mutual interpenetration of the polymer coils is intensified markedly when the solution volume is filled entirely by the swelling coils.     

pH-dependent optical properties of a poly(phenylene ethynylene) conjugated polyampholyte

A poly(phenylene ethynylene) conjugated polymer (PPE-NMe(3)(+)-COO(-)) containing tetraalkylammonium groups and carboxylate groups has been synthesized by Sonogashira coupling. Due to the presence of the strong cationic and weak anionic pendant units, the polymer undergoes a pH-induced transition from cationic polyelectrolyte to polyampholyte due to deprotonation of the carboxylic acid units in basic solution. Studies of the pH dependence of the polymers' optical properties reveal changes in absorption oscillator strength and fluorescence quantum efficiency that are triggered by the transition from cationic polyelectrolyte to polyampholyte nature. Stern-Volmer fluorescence quenching of PPE-NMe(3)(+)-COO(-) with a negatively charged quencher 1,4,5,8-naphthalenediimide-N,N-bis(methylsulfonate) (NDS) shows that the polymer fluorescence quenching is amplified at low pH where the polymer is a polycation, whereas the quenching efficiency is considerably less at high pH.     

Polyelectrolyte effects on the quenching of pyrene fluorescence in solutions of a pyrene substituted poly(acrylic acid)

The quenching of pyrene fluorescence by nitromethane, Tl⁺, Cu²⁺, I^?, and 4-dimethylaminopyridine (DMAP) in aqueous solutions of a pyrene substituted poly(acrylic acid) ( 1 ) was influenced by the “polyelectrolyte effect” of 1 . The efficiency of quenching in solutions of 1 was measured in terms of the Stern–Volmer constants for dynamic and static quenching which were obtained from comparison of the intensity and lifetime of pyrene fluorescence in solutions of 1 and a monomer model compound. The efficiency of quenching in solutions of 1 was always greater at high pH ( 9 ) in comparison to that at low pH ( 4 ). The ionization of carboxylic groups in 1 caused an expansion of the polymer mainchain and concomitant exposure of the pyrene molecules to the aqueous phase and quencher. The polyanion domain of 1 favored the condensation of cationic quenchers and could account for very efficient quenching in case of Cu²⁺ and Tl⁺. A very efficient quenching of pyrene fluorescence in solutions of 1 by DMAP at high pH was attributed to the hydrophobic interactions of DMAP and pyrene moiety. The iodide ions were less efficient quenchers of pyrene fluorescence due to electrostatic repulsion from the polyanion. The efficiency of quenching by nitromethane was not significantly affected by ionization of the carboxylic groups in 1 .     

Homogeneous non-competitive bioaffinity assay based on fluorescence resonance energy transfer

A homogeneous non-competitive assay principle for measurement of small analytes based on quenching of fluorescence is described. Fluorescence resonance energy transfer (FRET) occurs between the donor, intrinsically fluorescent europium(III)-chelate conjugated to streptavidin, and the acceptor, quencher dye conjugated to biotin derivative when the biotin-quencher is bound to Eu-streptavidin. Fluorescence can be measured only from those streptavidins that are bound to biotin of the sample, while the fluorescence of the streptavidins that are not occupied by biotin are quenched by quencher-biotin conjugates. The quenching efficiencies of the non-fluorescent quencher dyes were over 95% and one dye molecule was able to quench the fluorescence of more than one europium(III)-chelate. This, however, together with the quadrovalent nature of streptavidin limited the measurable range of the assay to 0.2-2 nmol L⁻¹. In this study we demonstrated that FRET could be used to design a non-competitive homogeneous assay for a small analyte resulting in equal performance with competitive heterogeneous assay.     

Fibre-optic fluorosensor for sulphur dioxide

A fibre-optic sensor for continuous measurement of sulphur dioxide is described. It is based on the dynamic quenching of the fluorescence of a polynuclear aromatic hydrocarbon [benzo(b)fluoranthene] which is immobilized in silicone polymer. Sulphur dioxide is shown to be an efficient quencher; Stern-Volmer graphs are given which describe the relation between SO₂ concentration and relative fluorescence. Detection limits are about 0.01% (v/v) SO₂ in air; the useful range is from 0.01–6% (v/v). Other gases likely to occur in air were found to be inert, except for oxygen which also acts as a dynamic quencher. Its interference is negligible for SO₂ levels below 6% in air at constant oxygen pressure, because the quenching efficiency of SO₂ is about 26 times higher than that of oxygen. For varying oxygen levels, a two-sensor technique is suggested.     

Quenching of the fluorescence of quinoline derivatives by exciplex formation with heteroatom-containing compounds

The efficient fluorescence of 2-phenylquinoline compounds is readily quenched by heteroatom-containing compounds such as amines and sulfides. The mechanism of quenching involves the formation of an exciplex between the quencher and the quinoline; in a few cases a new, red-shifted emission from the exciplex was observed. The efficiency of quenching depends on the ionization potential of the quencher - the compounds having low ionization potentials quench the fluorescence at a diffusion-controlled rate.     

基于脱氧核酶的新型铅离子荧光探针

将荧光猝灭基团修饰的17E脱氧核酶(17E DNAzyme)与荧光基团修饰的底物链通过6个脱氧核苷酸相连, 得到了一种新型的对Pb2+敏感的荧光探针. 由于DNAzyme与底物链发生分子内杂交, 荧光基团与猝灭基团相互靠近, 导致荧光猝灭. 当Pb2+存在时, DNAzyme被激活, 底物链被切断后释放出荧光基团标记的DNA片段, 从而产生明显的荧光信号. 据此可在常温下快速检测Pb2+, 检测下限为10 nmol/L. 在Zn2+, Mn2+, Co2+, Cd2+, Cu2+, Mg2+和Ni2+等多种二价金属离子中, 除Zn2+, Mn2+和Cd2+略有干扰外, 其它几种金属离子均无响应, 表明该荧光探针对Pb2+具有良好的选择性.