Switching and rectification of a single light-sensitive diarylethene molecule sandwiched between graphene nanoribbons

The "open" and "closed" isomers of the diarylethene molecule that can be converted between each other upon photo-excitation are found to have drastically different current-voltage characteristics when sandwiched between two graphene nanoribbons (GNRs). More importantly, when one GNR is metallic and another one is semiconducting, strong rectification behavior of the "closed" diarylethene isomer with the rectification ratio >10(3) is observed. The surprisingly high rectification ratio originates from the band gap of GNR and the bias-dependent variation of the lowest unoccupied molecular orbital of the diarylethene molecule, the combination of which completely shuts off the current at positive biases. Results presented in this paper may form the basis for a new class of molecular electronic devices.     

Exploring the boundaries of a light-driven molecular motor design: new sterically overcrowded alkenes with preferred direction of rotation

Insight in the steric and electronic parameters governing isomerization processes in artificial molecular motors is essential in order to design more advanced motor systems. A subtle balance of steric parameters and the combination of helical and central chirality are key features of light-driven unidirectional rotary molecular motors constructed so far. In an approach to decrease the steric hindrance around the central olefinic bond (rotary axis) and thereby lowering the energy barrier for helix inversion resulting in an increased rotation rate, the boundaries of our molecular motor design are explored. In a new design of a light-driven molecular motor based on a sterically overcrowded alkene the methyl substituent adjacent to the stereogenic center, which is responsible for the control of the direction of rotation, is shifted one position away from the fjord region of the molecule compared to the second-generation motor systems. In contrast to previously developed light-driven molecular motors, there is a preference for the methyl substituent to adopt a pseudo-equatorial orientation. Nevertheless, this new type of motor is capable of functioning as a rotary molecular motor, albeit not with full unidirectionality. Under the combined influence of light and heat, there is a preferred clockwise rotation of one half of the molecule. Surprisingly, the effect of shifting the methyl substituent on the energy barrier for helix inversion is small and even a slight increase in the barrier is observed.     

First-principles study of rectification in bis-2-(5-ethynylthienyl)ethyne molecular junctions

Using density functional theory (DFT) combined with the first-principles nonequilibrium Green's function (NEGF), we investigated the electron-transport properties and rectifying behaviors of several molecular junctions based on the bis-2-(5-ethynylthienyl)ethyne (BETE) molecule. To examine the roles of different rectification factors, asymmetric electrode-molecule contacts and donor-acceptor substituent groups were introduced into the BETE-based molecular junction. The asymmetric current-voltage characteristics were obtained for the molecular junctions containing asymmetric contacts and donor-acceptor groups. In our models, the computed rectification ratios show that the mode of electrode-molecule contacts plays a crucial role in rectification and that the rectifying effect is not enhanced significantly by introducing the additional donor-acceptor components for the molecular rectifier with asymmetric electrode-molecule contacts. The current-voltage characteristics and rectifying behaviors are discussed in terms of transmission spectra, molecular projected self-consistent Hamiltonian (MPSH) states, and energy levels of MPSH states.     

分子整流的实验与理论研究进展*

分子电子器件的思想始于20世纪70年代,分子整流的研究在30多年中取得了显著进展,包括分子结构设计、实验测量以及理论模拟。本文简述了分子整流的发展历程,介绍了被广泛研究的分子整流体系以及分子水平整流机理,包括D-σ-A型、D-π-A型、D-A型、构象转变和界面引起的整流,以及负微分电阻现象。最后提出了分子整流研究中存在的一些问题,并展望了分子整流的研究和发展方向。     

Quantum-chemical study on electrode field effects in elementary stages in electrochemical methyl chloride reduction

MINDO/3 has been applied to the effects of field strength and direction on elementary stages in electroorganic reaction, the electrochemical reduction of methyl chloride: molecule and anion-radical orientation, electron transfer from electrode to molecule, anion radical dissociation, and methyl radical and anion inversion. The molecular electronic and stearic structures are affected by the field, as are those for the anion radical, the molecular and radical reorientation barriers, the direction and height in the radical dissociation barrier, and the radical and anion configuration stabilities. An explanation is given for the electrolysis data for alkyl halides and for the properties of chemically modified electrodes.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, No. 4, pp. 412–420, July–August, 1989.     

Scan-rate-dependent ion current rectification and rectification inversion in charged conical nanopores

Herein we report a theoretical study of diode-like behavior of negatively charged (e.g., glass or silica) nanopores at different potential scan rates (1-1000 V·s(-1)). Finite element simulations were used to determine current-voltage characteristics of conical nanopores at various electrolyte concentrations. This study demonstrates that significant changes in rectification behavior can be observed at high scan rates because the mass transport of ionic species appears sluggish on the time scale of the voltage scan. In particular, it explains the influence of the potential scan rate on the nanopore rectifying properties in the cases of classical rectification, rectification inversion, and the "transition" rectification domain where the rectification direction in the nanopore could be modulated according to the applied scan rate.     

Binding at molecule/gold transport interfaces. V. Comparison of different metals and molecular bridges

The geometric and electronic structural properties of symmetric and asymmetric metal cluster-molecule-cluster' complexes have been explored. The metals include Au, Ag, Pd, and Al, and both benzenedithiol and the three isometric forms of dicyanobenzene are included as bridging molecules. Calculated properties such as cluster-molecule interface geometry, electronic state, degree of metal --> molecule charge transfer, metal-molecule mixing in the highest occupied molecular orbital-lowest unoccupied molecular orbital (HOMO-LUMO) energy region, the HOMO-LUMO gap, cluster --> cluster' charge transfer as a function of external field strength and direction, and the form of the potential profile across such complexes have been examined. Attempts are made to correlate charge transport with the characteristics of the cluster-complex systems. Indications of rectification in complexes that are asymmetric in the molecule, clusters, and molecule-cluster interfaces are discussed. The results obtained here are only suggestive because of the limitations of the cluster-complex model as it relates to charge transport.     

The first studies of a tetrathiafulvalene-sigma-acceptor molecular rectifier

Langmuir-Blodgett monolayers of a donor-acceptor diad TTF-sigma-(trinitrofluorene) (8) with an extremely low HOMO-LUMO gap (0.3 eV) have been used to create molecular junction devices that show rectification behavior. By virtue of structural similarities and position of molecular orbitals, 8 is the closest well-studied analogue of the model Aviram-Ratner unimolecular rectifier (TTF-sigma-TCNQ). Compressing the monolayer results in aligning the molecules, and is followed by a drastic increase in the rectification ratio. The direction of rectification depends on the electrodes used and is different in n-Si/8/Ti and Au/8/C16H33S-Hg junctions. The molecular nature of such behavior was corroborated by control experiments with fatty acids and by reversing the rectification direction with changing the molecular orientation (Au/D-sigma-A versus Au/A-sigma-D).     

Concentration-gradient-dependent ion current rectification in charged conical nanopores

Ion current rectification (ICR) in negatively charged conical nanopores is shown to be controlled by the electrolyte concentration gradient depending on the direction of ion diffusion. The degree of ICR is enhanced with the increasing forward concentration difference. An unusual rectification inversion is observed when the concentration gradient is reversely applied. A numerical simulation based on the coupled Poisson and Nernst-Planck (PNP) equations is proposed to solve the ion distribution and ionic flux in the charged and structurally asymmetric nanofluidic channel with diffusive ion flow. Simulation results qualitatively describe the diffusion-induced ICR behavior in conical nanopores suggested by the experimental data. The concentration-gradient-dependent ICR enhancement and inversion is attributed to the cooperation and competition between geometry-induced asymmetric ion transport and the diffusive ion flow. The present study improves our understanding of the ICR in asymmetric nanofluidic channels associated with the ion concentration difference and provides insight into the rectifying biological ion channels.     

Design of a new rotary molecular machine based on nitrogen inversion: a DFT investigation

Ab initio calculations are employed to investigate nitrogen inversion as a configuration change that can supply an extremely useful switchable control mechanism for some complex systems. In this paper, the design of a new artificial rotary molecular machine based on nitrogen inversion is discussed. The introduced design of a molecular rotator is based on the reciprocating motion of a substituent due to the inversion phenomenon, leading to the rotary motion in the molecule. Since simple secondary amines easily face the inversion process at room temperature, aziridine is selected as the initial driver for the molecular motion. The most obvious finding from this study is that, following the displacement of the substituent attached to the aziridine nitrogen atom, two rotary motions occurr in the molecule, one clockwise and another counterclockwise with a 39.52° to 150.09° angle domain.     

Modulating ion current rectification generating high energy output in a single glass conical nanopore channel by concentration gradient

Inspired by biological systems that have the inherent skill to generate considerable bioelectricity from the salt content in fluids with highly selective ion channels and pumps on cell membranes,herein,a fully abiotic,single glass conical nanopores energy-harvesting is demonstrated.Ion current rectification(ICR)in negatively charged glass conical nanopores is shown to be controlled by the electrolyte concentration gradient depending on the direction of ion diffusion.The degree of ICR is enhanced with the increasing forward concentration difference.An unusual rectification inversion is observed when the concentration gradient is reversely applied.The maximum power output with the individual nanopore approaches10~4pW.This facile and cost-efficient energy-harvesting system has the potential to power tiny biomedical devices or construct future clean-energy recovery plants.     

Molecular rectification in triangularly shaped graphene nanoribbons

We present a theoretical study of electron transport in tailored zigzag graphene nanoribbons (ZGNRs) with triangular structure using density functional theory together with the nonequilibrium Green's function formalism. We find significant rectification with a favorite electron transfer direction from the vertex to the right edge. The triangular ZGNR connecting to the electrode with one thiol group at each terminal shows an average rectification ratio of 8.4 over the bias range from ?1.0 to 1.0 V. This asymmetric electron transport property originates from nearly zero band gap of triangular ZGNR under negative bias, whereas a band gap opens under positive bias. When the molecule is connected to the electrode by multithiol groups, the current is enhanced due to strong interfacial coupling; however, the rectification ratio decreases. The simulation results indicate that the unique electronic states of triangular ZGNR are responsible for rectification, rather than the asymmetric anchoring groups. © 2012 Wiley Periodicals, Inc.     

Chaotropic Monovalent Anion‐Induced Rectification Inversion at Nanopipettes Modified by Polyimidazolium Brushes

A nonintuitive observation of monovalent anion‐induced ion current rectification inversion at polyimidazolium brush (PimB)‐modified nanopipettes is presented. The rectification inversion degree is strongly dependent on the concentration and species of monovalent anions. For chaotropic anions (for example, ClO₄^?), the rectification inversion is easily observed at a low concentration (5 mm ), while there is no rectification inversion observed for kosmotropic anions (Cl^?) even at a high concentration (1 m ). Moreover, at the specific concentration (for example, 10 mm ), the variation of rectification ratio on the type of anions is ranged by Hofmeister series (Cl^?≥NO₃^?>BF₄^?>ClO₄^?>PF₆^?>Tf₂N^?). Estimation of the electrokinetic charge density (σ^ek) demonstrates that rectification inversion originates from the charge inversion owing to the over‐adsorption of chaotropic monovalent anion. To qualitatively understand this phenomenon, a concentration‐dependent adsorption mechanism is proposed.     

Do Aviram-Ratner diodes rectify?

We present state-of-the-art first principles calculations for the IV characteristics of a donor-insulator-acceptor (DsigmaA) type molecular diode anchored with thiolate bonds to two gold electrodes. We find very poor diode characteristics of the device, and the origin of this is analyzed in terms of the bias-dependent electronic structure. At zero bias, the highest occupied molecular orbital (HOMO) is confined to the D part, and the lowest unoccupied molecular orbital (LUMO) is confined to the A part, while at 3.8 V the two states align, and this gives rise to an increasing current. The latter is a potential mechanism for rectification and may in some cases lead to favorable diode characteristics. We identify the origin of the vanishing rectification for the investigated molecule, and on the basis of this we suggest parameters which are important for successful chemical engineering of DsigmaA rectifiers.     

Heat rectification in molecular junctions

Heat conduction through molecular chains connecting two reservoirs at different temperatures can be asymmetric for forward and reversed temperature biases. Based on analytically solvable models and on numerical simulations we show that molecules rectify heat when two conditions are satisfied simultaneously: the interactions governing the heat conduction are nonlinear, and the junction has some structural asymmetry. We consider several simplified models where a two-level system (TLS) simulates a highly anharmonic vibrational mode, and asymmetry is introduced either through different coupling of the molecule to the contacts, or by considering internal molecular asymmetry. In the first case, we present analytical results for the asymmetric heat current flowing through a single anharmonic mode using different forms for the TLS-reservoirs coupling. We also demonstrate numerically, studying a realistic molecular model, that a uniform anharmonic molecular chain connecting asymmetrically two thermal reservoirs rectifies heat. This effect is stronger for longer chains, where nonlinear interactions dominate the transfer process. When asymmetry is related to the internal level structure of the molecule, numerical simulations reveal a nontrivial rectification behavior. We could still explain this behavior in terms of an effective system-bath coupling. Our study suggests that heat rectification is a fundamental characteristic of asymmetric nonlinear thermal conductors. This phenomenon is important for heat control in nanodevices and for understanding of energy flow in biomolecules.     

Phase switching of a single isomeric molecule and associated characteristic rectification

Variations in molecular electronic structures related to conformational change are exceedingly attractive because of their key role in the understanding and development of functional processes in molecular electronics and biology. We observed, for the first time, the novel phase switching of a photoactive isomeric molecule, N-(2-mercaptoethyl)-4-phenylazobenzamide (Azo molecule) at a single-molecule level, which exhibits a distinctive change in the conductive characteristic under scanning tunneling microscope (STM) measurement. In comparison with the results obtained by the measurement of photoactive isomerization of the isolated Azo molecule, which was performed also for the first time, the observed characteristics are attributed to the results of the trans and cis phase transformation of the Azo molecule, under the condition of an external electric field and current flow. A specific point is that the potential landscape of the system is controllable by the electric field and provides a conformational stability with asymmetric bias dependence resulting in rectification.     

A hydrophobic entrance enhances ion current rectification and induces dewetting in asymmetric nanopores

Hydrophobic interactions and local dewetting of hydrophobic cavities have been identified as a key mechanism for ionic gating in biological voltage-gated channels in a cell membrane. Hydrophobic interactions are responsible for rectification of the channels, i.e. the ability to transport ions more efficiently in one direction compared to the other. We designed single polymer nanopores with a hydrophobic gate on one side in the form of a single layer of C10 or C18 thiols. This nanoporous system behaves like an ionic diode whose direction of rectification is regulated by the pH of the electrolyte. In addition, reversible dewetting of the hydrophobic region of the pore was observed as voltage-dependent ion current fluctuations in time between conducting and non-conducting states. The observations are in accordance with earlier molecular dynamics simulations, which predicted the possibility of spontaneous and reversible dewetting of hydrophobic pores.     

Isotropic and anisotropic Raman scattering study in liquid p-dioxane

The isotropic and anisotropic profiles of the 835 and 2965 cm⁻¹ Raman lines of p-dioxane in the neat liquid and in solution have been studied as a function of temperature and concentration. From the correlation functions obtained by Fourier inversion of band contours, the possible interaction responsible for the vibrational dephasing of the oscillators and their reorientational relaxation are considered. It is shown that the p-dioxane molecule tumbling about the C₂ axis in the molecular plane perpendicular to the oxygen-oxygen direction proceeds by small-step Brownian diffusion associated with an Arrhenius activation energy of 9.0 kJ mol⁻¹. The vibrational relaxation mechanism of the two modes is interpreted in terms of pure dephasing due to weak collisions.     

Fixed or invertible calixarene-based directional shuttles

The first examples of rotaxanes based on calixarenes threaded by dialkylammonium ions, which also represent the first examples of calixarene-based molecular shuttles, are reported. The base/acid treatment demonstrated that these systems act as molecular shuttles, which move between three sites on the axle. When small OMe groups are appended at the calix[6]arene lower rim an unprecedented inversion of its shuttling direction is observed, which occurs through a cone-to-cone inversion of the macrocycle.