Influence of Sedimentation on Crystallization of Charged Colloidal Particles

The method of density matching between the solid and liquid phases is often adopted to effectively eliminate the effect of sedimentation of suspensions on dynamic behavior of a colloidal system. Experiments on crystallization of charged colloidal microspheres with di-ameter of 98 nm dispersed in density-matched and -unmatched media (mixtures of H₂O and D₂O in proper proportion) are compared to examine the influence of sedimentation. Reflection spectra of colloidal suspensions were used to monitor the crystallization process. Results showed that the crystal size of the density-unmatched (namely, in the presence of sedimentation) sample grew faster than that of the density-matched (in the absence of sedi-mentation) case at the initial stage of the crystallization, and then the latter overtook and outstripped the former. To explain these observations, we assume that in the settling of crystals sedimentation facilitates result in more particles getting into the crystal structures. However, as the crystals increase to varying sizes, the settling velocities become large and hydrodynamic friction strips off some particles from the delicate crystal structures. Overall, the sedimentation appears to accelerate the crystal size growth initially and then retard the growth. In addition, the crystal structures formed under microgravity were more closely packed than that in normal gravity.     

Sedimentation and drying dissipative structures of green tea

Sedimentation and drying dissipative patterns formed in the course of drying green tea (Ocha) have been studied in tea cup (Ochawan), glass dish, polystyrene dish, and watch glass. The broad-ring patterns are formed within several tens of minutes in suspension state by the convectional flow of water and colloidal particles of green tea (7 μm in mean size and 5 μm in its dispersion from the mean size). Formation of the broad-ring patterns is retarded when a tea cup is covered with a watch glass, which demonstrates the important role of the convectional flow of tea particles and water induced by the evaporation of water at the air-suspension interface under the gravity. The sedimentary particles are suspended above the substrate plate and always move by the convectional flow of water. The broad-ring patterns become sharp just before the solidification occurs. The broad rings are formed even in an inclined glass dish, though the rings are transformed slightly, which demonstrates the strong convectional flow of the particles. The drying broad rings and the microscopic fine structures are formed in the solidification processes on the bases of the convectional and sedimentation patterns in suspension state.     

Sedimentation pattern and sediments bioavailability in a wastewater discharging area by sequential metal analysis

Atomic absorption spectrometry was applied to investigate sedimentation pattern and sediments bioavailable phase (BAP) at 41 sites of a wastewater discharging area. The position of sampling sites was confirmed by the aid of a global positioning system (GPS). Contaminants discharged from a large wastewater plant are dispersed to the inner bay and the coastal line rather than the outer bay and the center waterway. The fractional composition of sediment Zn in the discharging area accounted for the presence of exchangeable 239 mg/kg (35.1%)>reducible 163 mg/kg (24.0%)>carbonate 149 mg/kg (22.0%)>residual 98 mg/kg (14.4%)>organic 31 mg/kg (4.6%) in sediment layers of 0–2 cm. However, the order was changed in layers of 15–20 cm as residual>reducible>organic>carbonate>exchangeable. The most abundant fraction of sediment Cu and Fe was organic Cu and residual Fe, respectively. The content of BAP in sediments are quite different with respect to metal species and sediment layer analyzed. It is obvious that sequential metal analysis is a useful tool in understanding dispersion of sediments and sedimentation patterns.     

Sedimentation equilibrium of suspensions of colloidal particles at finite concentrations

Equilibrium concentration profiles of non-dilute colloidal suspensions are calculated by means of the Carnahan-Starling expression for the osmotic compressibility of hard sphere liquids. The profiles depend on the average volume fraction of the suspension, , and on the field interaction parameter, ₀ (reciprocal of the Péclet number at infinite dilution). Profiles are computed for values of and ₀ typical of those encountered in sedimentation field-flow fractionation experiments. It is found that, in most cases, the volume fraction at the depletion wall is negligibly small and that the volume fraction at the accumulation wall ₀, depends on the ratio <>₀/₀ only. An inflexion point is found in the concentration profile if ₀ is larger than 0.13 whatever the value of ₀.     

Efficient removal of DNA from proteomic samples prior to two-dimensional map analysis

Several methods have been described in the literature for removal of DNA from protein samples prior to proteome analysis. They in general involve protein precipitation techniques. In other protocols, DNAse treatment is suggested prior to precipitation of proteins in excess acetone. All these methods have been evaluated and found to perform poorly in DNA removal, as illustrated by two-dimensional (2D) maps where horizontal and vertical sample streaking are still substantial. Such removal is in general necessary in tissue lysates and especially when analysing sub-cellular organelles, such as nuclei, where the high DNA levels strongly interfere with proteome analysis. Another method is proposed here for efficient DNA removal: two-phase extraction of DNA in chloroform/phenol/isoamyl alcohol, a procedure commonly used to rid DNA samples of protein contaminants, but rarely applied to protein preparation. This extraction is not very efficient if performed at slightly acidic to neutral pH values, but it performs extremely well at pH values of 9.5 or higher. The 2D maps thus obtained of Escherichia coli lysates as well as extracts from purified nuclei of eukaryotic cells are not only devoid of any vertical or horizontal streaking, but exhibit many more spots, especially in the alkaline region of the 2D gels, suggesting that these basic proteins were in general lost to proteome analysis due to co-precipitation in tenacious protein–DNA complexes. It is hypothesized that the alkaline pH values adopted in the two-phase extraction help to fully disrupt any residual DNA–protein complexes, due to strong Coulombic repulsion.     

The Optical Characteristics Method of Sedimentation Stability for Dense Magnetic Particles Suspensions

A new method for characterization of dense magnetic particles suspension is presented. Spectrophotometric method to timing determination of amounts of settled micron magnetic particles in a dense particles suspension was used. When nano particles TiO2were added to the dense magnetic suspension, sedimentation stability of the system was evidently improved.     

Stereoselective synthesis of Sch 642305, an inhibitor of bacterial DNA primase

Sch 642305 is a fungal nonanolide, which inhibits bacterial DNA primase and HIV-1 Tat transactivation. The enantioselective synthesis of Sch 642305 was succeeded starting from useful chiral building block via stereoselective dianion alkylation of β-ketosulfoxide and lactonization.     

Surface acetylation of bacterial cellulose

Bacterial cellulose was partially acetylated by the fibrous acetylationmethod to modify its physical properties, while preserving the microfibrillarmorphology. The overall degree of substitution was varied from 0.04 to 2.77 bychanging the amount of acetic anhydride added. X-ray diffraction of thepartially acetylated samples showed the crystalline pattern of unmodified celluloseI up to moderate degrees of acetylation, and the change in peak widthsindicatedthat acetylation proceeded from the surface of microfibrils, leaving the coreportion unreacted. Scanning electron microscopy revealed that even low levelsofacetylation were effective to maintain the original microfibrillar morphologyofbacterial cellulose on direct drying from water.     

The bacterial flagella and the flagellar protein flagellin

In comparison with the relatively complicated flagella of all nucleated organisms, most of the actively motile bacteria have very much simpler locomotion organelles. These flagella are long thin filaments with a helical superstructure, anchored at one end in the cell membrane. Helical waves pass along the flagella in the distal direction during locomotion. In the flagella, identical structural units of a single protein species, flagellin, are linked to one another by non-covalent bonds. The flagellin subunits can be separated from one another by mild methods, and their biochemistry as well as their structure and morphology can be investigated in the isolated state. Under certain conditions they can reaggregate in vitro to form polymorphous helical filaments, which are practically indistinguishable from intact flagella. In the flagellum, the elongated flagellin molecules have a layered arrangement in about ten parallel strands, which in turn form a hollow cylinder. Since this cylinder is deformed into a large helix, the individual chemically identical flagellin protomers and the protomer strands in the helical flagella are only quasi-equivalent. The conformation and bonding pattern of the individual longitudinal flagellin lines can presumably be controlled in vitro by the basal structures, so that movement within the flagellum could conceivably occur as follows. A cyclically induced change in the length of the individual strands could result in an apparent rotation of the helical flagellum. According to hydrodynamic calculations, the resulting forward thrust is sufficient to propel the bacteria at the observed speeds of up to 50 μm/s.     

Biotechnological Frontiers of DNA Nanomaterials Continue to Expand: Bacterial Infection using Virus-Inspired Capsids

The elegant geometry of viruses has inspired bio-engineers to synthetically explore the self-assembly of polyhedral capsids employed to protect new cargo or change an enzymatic microenvironment. Recently, Yang and co-workers used DNA nanotechnology to revisit the icosahedral capsid structure of the phiX174 bacteriophage and reloaded the original viral genome as cargo into their fully synthetic architecture. Surprisingly, when using a favorable combination of structural rigidity and dynamic multivalent cargo entrapment, the synthetic particles were able to infect non-competent bacterial cells and produce the original phiX174 bacteriophage. This work presents an exciting new direction of DNA nanotech for bio-engineering applications which involve bacterial interactions.     

Size characterization by Sedimentation Field Flow Fractionation of silica particles used as food additives

Four types of SiO₂, available on the market as additives in food and personal care products, were size characterized using Sedimentation Field Flow Fractionation (SdFFF), SEM, TEM and Photon Correlation Spectroscopy (PCS). The synergic use of the different analytical techniques made it possible, for some samples, to confirm the presence of primary nanoparticles (10 nm) organized in clusters or aggregates of different dimension and, for others, to discover that the available information is incomplete, particularly that regarding the presence of small particles. A protocol to extract the silica particles from a simple food matrix was set up, enriching (0.25%, w w⁻¹) a nearly silica-free instant barley coffee powder with a known SiO₂ sample. The SdFFF technique, in conjunction with SEM observations, made it possible to identify the added SiO₂ particles and verify the new particle size distribution. The SiO₂ content of different powdered foodstuffs was determined by graphite furnace atomic absorption spectroscopy (GFAAS); the concentrations ranged between 0.006 and 0.35% (w w⁻¹). The protocol to isolate the silica particles was so applied to the most SiO₂-rich commercial products and the derived suspensions were separated by SdFFF; SEM and TEM observations supported the size analyses while GFAAS determinations on collected fractions permitted element identification.     

Immobilized bacterial luciferase and its applications

This review discusses the properties of the bioluminescent bacterial system as well as the methods for immobilization of bacterial luciferases and for their co-immobilization with other enzymes. The analytical systems using immobilized bacterial luciferases and their applications in analytical biochemistry and biotechnology have been described.     

Electrical impedance spectroscopy for detection of bacterial cells in suspensions using interdigitated microelectrodes

In this study, we present a new, simple and rapid impedance method to detect bacterial cells by making use of the impedance properties of bacterial cell suspensions using interdigitated microelectrodes. It was found that bacterial cell suspensions in deionized (DI) water with different cell concentrations could generate different electrical impedance spectral responses, whereas cell suspensions in phosphate buffered saline (PBS) solution could not produce any significant differences in impedance spectra in response to different cell concentrations. In DI water suspensions, impedance at 1 kHz decreased with the increasing cell concentrations in the suspensions. The impedance of cell suspensions in DI water was discussed and found that it was resulted from the cell wall charges and the release of ions or other osmolytes from the cells. A linear relationship between the impedance and the logarithmic value of the cell concentration was found in the cell concentration range from 10⁶ to 10¹⁰ cfu/ml, which can be expressed by a regression equation of Z (kΩ) = −2.06 log C (cells/20 μl) + 5.23 with R² = 0.98. The detection limit was calculated to be 3.45 × 10⁶ cfu/ml, which is comparable with many label-free immunosensors for detection of pathogenic bacteria reported in the literature. To achieve the selectivity of this method, we also demonstrated the feasibility of integrating magnetic separation to this impedance method. This study has demonstrated that bacterial cell concentration can be inferred by measuring the impedance of cell suspensions in DI water. This new detection mechanism could be an alternative to current impedance methods that have been reported for the detection of bacterial cells, e.g. impedance microbiology and electrical/electrochemical impedance biosensors.     

Sedimentation and drying dissipative patterns of binary suspensions of colloidal silica spheres having different sizes

The sedimentation and drying dissipative structural patterns were formed during the course of drying binary mixtures among colloidal silica spheres of 183 nm, 305 nm, and 1.205 μm in diameter in aqueous suspension on a watch glass, a glass dish, and a cover glass, respectively. The broad ring-like sedimentation patterns were formed within several hours in suspension state for all the substrates used. Colorful macroscopic broad ring-like drying patterns were formed for the three substrates. In a watch glass, macroscopic drying patterns were composed of the outer and inner layers of small and large spheres, respectively. The two colored layers were ascribed to the Bragg diffractions of light by the dried colloidal crystals of the corresponding spheres. The width ratio of the layers changed in proportion to the mixing ratio of each spheres. In a glass dish, wave-like macroscopic drying patterns were observed in the intermediate areas between the outside edges of the broad ring and the inner wall of the cell. On a cover glass, the sphere mixing ratios were analyzed from the widths of the drying broad rings of the small spheres at the outside edge. High and distinct broad rings of small spheres and the low and vague broad one formed at the outer edges and in the inner area, respectively. Drying dissipative pattern was clarified to be one of the novel analysis techniques of colloidal size in binary colloidal mixtures.     

Sedimentation and drying dissipative structures of colloidal silica (1.2 μm in diameter) suspensions in a watch glass

Sedimentation and drying dissipative structural patterns formed in the course of drying aqueous suspensions of colloidal silica spheres (1.2 μm in diameter) were observed in the various sizes of watch glasses. The macroscopic broad ring patterns were formed on the inner inclined watch glass in suspension state within a short time after suspension was set. The important role of the convectional flow of water and colloidal spheres for the pattern formation is supported. The influence of sodium chloride was also studied. It was clarified that the sedimentary spheres move toward upper and outer edges along the inclined cell wall by the cell convection and hence the patterns are formed by the balancing between the outside movement and the downward sedimentation of the spheres. Beautiful microscopic drying patterns were also observed from the optical microscopy.     

Sedimentation potential of complexes of nitroamminecobalt(III) in aqueous solution at 25°C

Sedimentation potentials (SP) were measured for a series of nitroamminecobalt(III) chlorides in aqueous solution. The magnitudes of the sedimentation potentials varied with the number of NO ₂ ^– ligands in the complexes and a definite positive signal was observed for a neutral complex [Co(NO₂)₃(NH₃)₃]⁰. The division of the partial molar volumes of nitroamminecobalt(III) complexes based on the observed SP values resulted in comparable values of the partial molar volume for the Cl^– ion, suggesting no appreciable hydrolysis nor ionic association occur for these nitroammine-cobalt(III) complexes.     

Synthesis and characterization of hydroxypropyl cellulose from bacterial cellulose

Bacterial cellulose produced by Acetobacter xylinum has been reacted with propyleneoxide to synthesize hydroxypropyl cellulose(HPC) under different reaction conditions while diluted by toluene. The effects of mass ratio of bacterial cellulose to propyleneoxide, dilutability of toluene, reaction temperature(T) and time(t) were investigated by series of experiments. The degree of substitution(DS), hydroxypropyl content(A) and yield(η) were compared. The optimized product exhibited cold-water solubility and hot-water gelatinization in aqueous medium. Further study was carried out with FTIR, TGA, XRD, SEM and 13C-NMR for characterization. The water/air contact angle measurement reveals that it is a good hydrophobic material with good mechanical properties.     

Multivariate curve resolution of mixed bacterial DNA sequence spectra: identification and quantification of bacteria in undefined mixture samples

A comprehensive understanding of factors that influence microbial competition and cooperation, their diversity and processes will be greatly beneficial in many research areas. Current tools for microflora determinations are far from suitable for high‐throughput monitoring of development in complex microbial communities. Here, we describe the application of a calibration free method, multivariate curve resolution with alternating least squares (MCR‐ALS), for identification and quantification of different microbes in mixture samples. The idea is to utilize MCR‐ALS to enable close monitoring of ecology in a variety of microbial communities. The data from two designed experiments consisting of DNA sequence spectra measured on mixtures were analysed with MCR‐ALS using no prior information on the data except for appropriate constraints, such as non‐negativity and closure. The results were compared both to the known true concentrations as well as to the results obtained from the well‐established multivariate calibration method partial least squares (PLS) regression. MCR‐ALS performed as well as PLS regression, successfully extracting all pure bacterial spectra and quantitative information on these, with 97.81% and 97.91% explained variance for the first and the second data set, respectively. Copyright © 2008 John Wiley & Sons, Ltd.     

Blocking and ripening of colloids in porous media and their implications for bacterial transport

A model accounting for the dynamics of colloid deposition in porous media was developed and applied to systems containing similarly charged particles and collectors. Colloid breakthrough and intracolumn retention data confirmed that blocking reduced overall colloidal adhesion to soil. The surface coverage at which blocking occurred varied for the type of colloid, as shown by changes in the clean-bed collision efficiency, _0, and the excluded area parameter, β. Excluded area parameters were relatively high due to unfavorable interactions between particles and collectors, and ranged from 11.5 for one bacterium (Pseudomonas putida KT2442) to 13.7 and 24.1 for carboxylated latex microspheres with differing degrees of charged groups on their surfaces. Differences in β values for the three colloids were correlated with electrophoretic mobility, with the most negatively charged colloid (carboxylated latex; CL microspheres) having the highest β. No correlation between hydrophobicity and ₀ or β was found. Besides using colloidal particles capable of blocking, the addition of chemical additives to the soil has been suggested as a means for reducing attachment of colloids to porous media. Dextran addition caused an order-of-magnitude reduction in the overall (for carboxylated-modified latex; CMLs). This reduction was not attributed to blocking, but to the sorption of dextran to the soil which lowered ₀. The filtration-based numerical model used to fit the ₀ and β parameters was used to demonstrate that blocking could result in significantly enhanced bacterial transport in field situations.