Development of photo- and chemo-stable near-infrared-emitting dyes: linear-shape benzo-rosol and its derivatives as unique ratiometric bioimaging platforms

Microscopic imaging aided with fluorescent probes has revolutionized our understanding of biological systems. Organic fluorophores and probes thus continue to evolve for bioimaging applications. Fluorophores such as cyanines and hemicyanines emit in the near-infrared (NIR) region and thus allow deeper imaging with minimal autofluorescence; however, they show limited photo- and chemo-stability, demanding new robust NIR fluorophores. Such photo- and chemo-stable NIR fluorophores, linear-shape π-extended rosol and rosamine analogues, are disclosed here which provide bright fluorescence images in cells as well as in tissues by confocal laser-scanning microscopy. Furthermore, they offer unique ratiometric imaging platforms for activatable probes with dual excitation and dual emission capability, as demonstrated with a 2,4-dinitrophenyl ether derivative of benzo-rosol.

NIR-emitting benzo-rosol and -rosamine dyes offer novel ratiometric imaging platforms with high pohoto- and chemo-stability.     

Facile preparation of holmium(III)-doped carbon nanodots for fluorescence/magnetic resonance dual-modal bioimaging

Holmium(III)-doped carbon nanodots (HoBCDs) were synthesized for the first time via hydrothermal treatment of citrate acid (CA), branched-polyethylenimine (BPEI) and diethylenetriamine pentaacetic acid hydrate holmium(III) dihydrogen salt (Ho-DTPA), and their dual-modality bioimaging applications were demonstrated by the use of HeLa cells. The as-prepared nanoprobes exhibited bright fluorescence with an absolute quantum yield of 8% and apparent contrast enhancement in T₁-weighted images.     

Novel strategy of constructing fluorescent probe for MAO-B via cascade reaction and its application in imaging MAO-B in human astrocyte

A novel strategy was developed to detect MAO-B and image MAO-B in human astrocyte by constructing coumarin via cascade reaction and intramolecular cyclization.     

Ovalbumin-stabilized gold nanoclusters with ascorbic acid as reducing agent for detection of serum copper

Ovalbumin-stabilized gold nanoclusters(OVA@AuNCs) were prepared with ascorbic acid as a reducing agent. This strategy could realize the synthesis of water-soluble OVA@AuNCs within 20 min. The asprepared fluorescent probe showed a red fluorescence emission at 630 nm. Moreover, the properties of the OVA@AuNCs were characterized by transmission electron microscope, dynamic light scattering,ultraviolet-visible spectroscopy, fluorescent spectroscopy. Based on the surface electron density decrease-induced fluorescence quenching mechanism, the OVA@AuNCs provided high sensitivity and selectivity for sensing copper ions. A good linear relationship was obtained between the fluorescence intensity of OVA@AuNCs and the concentration of copper ions in the range of 5.0-100.0 μmol/L(R~2=0.999) with a detection limit of 640 nmol/L Furthermore, the rat serum copper contents were determined by using the OVA@AuNCs based assay, indicating great potential of fluorescent probes for application in biological and clinical analysis.     

Bioimaging Based on Nucleic Acid Nanostructures

Nucleic acid nanostructures with structural programmability, spatial addressability and excellent biocompatibility have drawn much attention in various biomedical applications, such as bioimaging, biosensing and drug delivery. In this review, we summarize the recent research progress in the field of bioimaging based on nucleic acid nanostructures with different imaging models, including fluorescent imaging(FI), magnetic resonance imaging(MRI), photoacoustic imaging(PAI) and positron emission tomography/computed tomography(PET/CT) imaging. We also discuss the remaining challenges and further opportunities involved in the bioimaging research based on nucleic acid nanostructures.     

Imaging of Colorectal Cancers Using Activatable Nanoprobes with Second Near‐Infrared Window Emission

Fluorescent probes in the second near‐infrared window (NIR‐II) allow high‐resolution bioimaging with deep‐tissue penetration. However, existing NIR‐II materials often have poor signal‐to‐background ratios because of the lack of target specificity. Herein, an activatable NIR‐II nanoprobe for visualizing colorectal cancers was devised. This designed probe displays H₂S‐activated ratiometric fluorescence and light‐up NIR‐II emission at 900–1300 nm. By using this activatable and target specific probe for deep‐tissue imaging of H₂S‐rich colon cancer cells, accurate identification of colorectal tumors in animal models were performed. It is anticipated that the development of activatable NIR‐II probes will find widespread applications in biological and clinical systems.     

A new diketopyrrolopyrrole-based near-infrared (NIR) fluorescent biosensor for BSA detection and AIE-assisted bioimaging

A new near-infrared fluorophore (DPPAM) based on diketopyrrolopyrrole was developed as bioprobe and cell stain. This bioprobe is shown to be ‘turn-on’ response for BSA with high sensitivity and NIR emission ranged from 600 to 850 nm. AIE-assisted bioimaging also exhibited the obvious NIR signals in some special region where the dye-aggregates attached.     

A near-infrared fluorescence chemodosimeter for fluoride via specific Si–O cleavage

A near-infrared (NIR) fluorescent chemodosimeter for F^? was developed on the basis of dicyanomethylene-4H-chromene derivative, with several merits such as a high off/on ratio response, NIR fluorescence, and high selectivity to F^?. The F^? triggered specific Si–O cleavage of DCPOSi to release DCPO^? is responsible for the dramatic color change and distinct NIR fluorescence enhancement at 718 nm.     

One-pot photoreduction to prepare NIR-absorbing plasmonic gold nanoparticles tethered by amphiphilic polypeptide copolymer for synergistic photothermal-chemotherapy

We developed one-pot photoreduction strategy to fabricate the NIR-absorbing plasmonic PLC-b-PEO@Au NPs. It possessed strong NIR absorption at 700-1100 nm, an ultrahigh photothermal conversion efficiency of 62.1%, and good photostability.     

A General Strategy for Development of Near‐Infrared Fluorescent Probes for Bioimaging

Near‐infrared (NIR) fluorescent dyes with favorable photophysical properties are highly useful for bioimaging, but such dyes are still rare. The development of a unique class of NIR dyes via modifying the rhodol scaffold with fused tetrahydroquinoxaline rings is described. These new dyes showed large Stokes shifts (>110 nm). Among them, WR3, WR4, WR5, and WR6 displayed high fluorescence quantum yields and excellent photostability in aqueous solutions. Moreover, their fluorescence properties were tunable by easy modifications on the phenolic hydroxy group. Based on WR6, two NIR fluorescent turn‐on probes, WSP‐NIR and SeSP‐NIR, were devised for the detection of H₂S. The probe SeSP‐NIR was applied in visualizing intracellular H₂S. These dyes are expected to be useful fluorophore scaffolds in the development of new NIR probes for bioimaging.     

Ferromagnetic resonance in β-p-NPNN at radio-frequency region

We performed the low-temperature and radio-frequency (rf) ESR of spherically molded single crystals of β-p-NPNN in order to re-investigate the ferromagnetic resonance (FMR). The symmetric FMR signals were clearly observed below 0.8 K for the first time. The resonance field for H//c is markedly shifted about 80 G higher than the EPR resonance field while the anisotropy of the resonance field is very weak when the magnetic field is applied within the ab-plane. These results clearly indicate the spin-hard axis is parallel to the c-axis. We estimate the magnetic anisotropy H_K = 61 G using the FMR relation with uniaxial anisotropy.     

The competing roles of topology and spin density in the magnetic behavior of spin-delocalized radicals: Donor–acceptor annelated nitronyl nitroxides

The effects of acceptor–donor interactions in thienyl substituted benzimidazole-nitronyl nitroxides (TBNN) on the absorption spectroscopy, spin density distribution, magnetic behavior, and crystallographic packing were explored through spectroscopy, computation, and characterization of structure and magnetic properties in the crystalline phase. The electronic spectra of the radicals exhibit a strong broad absorption in the NIR (λ_max ～ 1000 nm) that exhibits solvatochromism consistent with charge transfer between the thienyl (donor) and benzonitronyl nitroxide (acceptor) dyads. Computational analysis allowed assignment of the transition as a HOMO–SOMO transition (TD-DFT UB3LYP/6-31G7). The TBNN radicals form highly disordered slipped π-stacks in the solid state that give rise to antiferromagnetic interactions consistent with 1D chain interactions. The magnetic behavior was well-fit to a Bonner–Fisher model to give exchange parameters of J = ?2 to ?10 cm^?1 depending on substitution. The weak exchange parameters are attributed to the degree of solid-state disorder, and the observed properties can be rationalized by the effects of substitution on the electronic structure and topology of the radicals.     

19F MRI Probes for Multimodal Imaging**

Magnetic resonance imaging (MRI) is one of the most powerful imaging tools today, capable of displaying superior soft-tissue contrast. This review discusses developments in the field of ¹⁹F MRI multimodal probes in combination with optical fluorescence imaging (OFI), ¹H MRI, chemical exchange saturation transfer (CEST) MRI, ultrasonography (USG), X-ray computed tomography (CT), single photon emission tomography (SPECT), positron emission tomography (PET), and photoacoustic imaging (PAI). In each case, multimodal ¹⁹F MRI probes compensate for the deficiency of individual techniques and offer improved sensitivity or accuracy of detection over unimodal counterparts. Strategies for designing ¹⁹F MRI multimodal probes are described with respect to their structure, physicochemical properties, biocompatibility, and the quality of images.     

A multimodal spectrometer for Raman scattering and near-infrared absorption measurement

Raman and infrared (IR) spectroscopy are complementary spectroscopic techniques. However, measurement of Raman and IR spectra are commonly carried out on separate instruments. A dispersive system that enables both Raman spectroscopy and NIR spectroscopy was designed, built, and tested. The prototype system measures spectral ranges of 2600–300 cm⁻¹ and 752–987 nm for Raman and NIR channels, respectively. A wavelength accuracy better than 0.6 nm and spectral resolution better than 1 nm (14.4 cm⁻¹ for Raman channel) could be achieved with our configuration. The linearity of spectral response was better than 99.8%. The intensity stability of the instrument was found to be 0.7% and 0.4% for Raman and NIR channels, respectively. The performance of the instrument was evaluated using binary aqueous solutions of ethanol and ovalbumin. It was found that ethanol concentrations (2–10%) could be predicted with a root mean squared error of prediction (RMSEP) of 0.45% using Raman peak height at 882.2 cm⁻¹. Quantification of ovalbumin concentration (8–16 g/L) in aqueous solutions and in denatured states yielded RMSEP values of 1.05 g/L and 0.74 g/L, respectively. Using concentration as external perturbation in two-dimensional correlation spectroscopy (2DCOS), heterospectral correlation analysis revealed the relationship between NIR and Raman spectra.     

A novel fluorescent probe with a large Stokes shift for real-time imaging mitochondria in different living cell lines

Fluorescent dyes with large Stokes shift play a key role in avoiding self-quenching and scattered light of dyes in the process of biological imaging. In this work, a novel mitochondria-targetable fluorescent dye (PI-C2) with large Stokes shift (e. g. Maximum value is 219 nm in DMSO) have been developed. Compared to the commercial mitochondria probes MTR and MTG (Less than 30 nm in various solution), the newly constructed PI-C2 has a much larger Stokes shift in various solutions (169–219 nm in various solutions). Furthermore, the probe can successfully be applied for sensing mitochondria, and exhibited excellent photostability in different living cell lines. The novel fluorescent platform with the large Stokes may be extended to construct powerful fluorescent probes with large Stokes shift for detecting a wide variety of biomolecules in mitochondria.     

Antiferromagnetic resonance in quasi-one-dimensional ferromagnet γ-p-NPNN

The low frequency (∼300 MHz) and low-temperature (0.4 K) ESR were performed in the γ-phase of p-NPNN, which is considered to be as a quasi-one-dimensional ferromagnet above the antiferromagnetic ordering temperature (0.65 K without a static magnetic field). Below 0.6 K, we succeeded in observing the antiferromagnetic resonance (AFMR) for the first time. The frequency–field relation is well reproduced by the two-sublattice model with orthorhombic anisotropy. In addition, we measured magnetic torque using small single crystal, which has the dimension of 0.25 × 0.10 × 0.10 mm³. A spin–flop transition and AF-paramagnetic (AF-P) transition are observed at 470 and 2100 G at 0.4 K, respectively. Both AFMR and magnetic torque measurements indicate that the spin-easy axis is almost parallel to the direction to phenyl ring from the ONCNO fragments.     

Quantum efficiency improvement of a cesium based resonance fluorescence detector by helium-induced collisional excitation energy transfer

Quantum efficiency improvement of a cesium based resonance fluorescence detector (RFD) was achieved by enhancing the transfer in a particular channel of the RFD excitation scheme with noble gas-induced collisional excitation energy transfer (CEET). The influence of Cs–Ar and Cs–He collisional mixing between the 6D and 7P states in cesium on the quantum efficiency of the 6S → 6D → 7P → 6S excitation scheme was investigated by fluorescence measurements at relevant transitions. Ar-induced CEET was found to have little effect on the fluorescence response and quantum efficiency of the Cs RFD excitation scheme. However, a 35 fold quantum efficiency increase in the cesium resonance fluorescence detector response at only moderate He pressures was observed.     

Near-infrared fluorescence spectroscopy of single-walled carbon nanotubes and its applications

Semiconducting single-walled carbon nanotubes (SWCNTs) emit fluorescence at near-infrared (NIR) wavelengths that are characteristic of the specific diameter and the chiral angle. While providing a convenient method for structural identification of semiconducting SWCNTs, NIR fluorescence of SWCNTs also offers a powerful approach for sensor development and in vivo or real-time imaging of biological systems.This article provides an introductory overview of the approaches to obtaining individually dispersed semiconducting SWCNTs with reasonably good purity, which is a critical step in acquiring NIR fluorescence spectra. It also summarizes the progress since 2002 in sensor design and applications in bioimaging in vitro and in vivo using NIR fluorescence of semiconducting SWCNTs.     

A simple and sensitive assay for apurinic/apyrimidinic endonuclease 1activity based on host-guest interaction of β-cyclodextrin polymer and pyrene

A simple and sensitive method for APE1 activity detection was developed based on fluorescence enhancement of pyrene in the presence of β-cyclodextrin polymer.     

A novel method for the synthesis of biodiesel from soybean oil and urea

The increasing demand for energy has encouraged the development of renewable resources and environmentally benign fuel such as biodiesel. In this study, ethyl fatty esters (EFEs), a major component of biodiesel fuel, were synthesized from soybean oil using sodium ethoxide as a catalyst. By-products were glycerol and difatty acyl urea (DFAU), which has biological characteristics, as antibiotics and antifungal medications. Both EFEs and DFAU have been characterized using Fourier transform infrared (FTIR) spectroscopy, and ¹H nuclear magnetic resonance (NMR) technique. The optimum conditions were studied as a function of reaction time, reactant molar ratios, catalyst percentage and the effect of organic solvents. The conversion ratio of soybean oil into pure EFEs was 76% after 10 h of reaction. The highest conversion yield of EFEs is obtained when the urea/soybean oil ratio was from 6.2 mmol to 1 mmol, while the highest production of DFAU is obtained when the ethoxide (as a catalyst)/soybean oil ratio is from 6.4 mmol to 1 mmol in hexane as the reaction medium.