Relation between density and refractive index of organic compounds

Conclusions It was shown with a high degree of accuracy that the density and refractive index in a homologous series of organic compounds are related by a linear function.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 1, pp. 182–184, January, 1972.     

Ionization energies of homologous organic compounds and correlation with molecular size

The empirical relationship IE ∝? 1/n, between the ionization energy (IE) and molecular size (as represented by the number of atoms, n) in homologous series of organic compounds has been confirmed for n-alkanes, alkyl halides, cyclic ethers and alkyl-subsiituted cycloalkanes. For each series, the plot of IE vs. 1/n produces a line of characteristic slope. The only exception is the cycloalkanes themselves, whose IE values (from C₃ to C₈) are closely similar. The possible relationship between the IE, the polarizability of the molecules and the energy of the highest occupied molecular orbital is briefly discussed.     

A stereochemically accurate chemical substance database based on the systematic names of organic compounds. 1. Low molecular weight organic compounds

A chemical substance database, containing chemical structures generated automatically from their IUPAC systematic names, is described. The structure generation program can convert the names of natural products, peptides, and stereochemically complex names into stereochemically correct connection tables. More than 300,000 commonly encountered compounds are stored in the database and are publicly accessible through the JOIS-F online system, which also offers mass spectral, thermochemical, and other factual databases.     

Vacancies in the solids of low molecular weight organic compounds observed by positron annihilation

PAL were measured for several low molecular organic compounds, normal and cyclic-hydrocarbons and their perfluorinated ones, from room temperature down to about 40 K, and information about the vacancies in them has been extracted from ₃ andI ₃. Normally the size of vacancies were larger in the solids comprising larger molecules, showing thato-Ps can represent the vacancy size. In a special case of perfluorocyclohexane whose solid had to be prepared by sublimation the vacancy size was larger than expected. In all the solid molecules studied twoo-Ps states could be observed and their relative importance could easily change showing a hysteresis-like behavior. At further lower temperatures of around 40 K theo-Ps state with longer lifetime and larger intensity became overwhelming for all molecules. Also ₃ andI ₃ were not very sensitive to most of the phase transitions, including the melting points.     

A comparison of methods for melting point calculation using molecular dynamics simulations

Accurate and efficient prediction of melting points for complex molecules is still a challenging task for molecular simulation, although many methods have been developed. Four melting point computational methods, including one free energy-based method (the pseudo-supercritical path (PSCP) method) and three direct methods (two interface-based methods and the voids method) were applied to argon and a widely studied ionic liquid 1-n-butyl-3-methylimidazolium chloride ([BMIM][Cl]). The performance of each method was compared systematically. All the methods under study reproduce the argon experimental melting point with reasonable accuracy. For [BMIM][Cl], the melting point was computed to be 320 K using a revised PSCP procedure, which agrees with the experimental value 337-339 K very well. However, large errors were observed in the computed results using the direct methods, suggesting that these methods are inappropriate for large molecules with sluggish dynamics. The strengths and weaknesses of each method are discussed.     

Effect of molecular weight on the refractive increment of polyethylene and n-alkanes

As in the case with other polymers previously reported, the values of the refractive index increment dn/dc of polyethylene and the n-alkanes change with molecular weight. Most of the variation may be understood by examination of the role of density in the Lorentz-Lorenz mixing equation for specific refractivity, R₁₂ = p₁R₁ + P₂R₂ used to calculate dn/dc. It may also be shown that as the absolute refractive index difference between solute and solvent becomes smaller, dn/dc becomes more sensitive to density change of the solute.     

Morphology and melting behavior of nascent ultra-high molecular weight polyethylene

The nascent morphology of UHMW PE exhibits high melting point, high crystallinity, and increased WAXS line breadth relative to samples formed by melt crystallization. Different empirical relationships between crystal size and melting point are observed for nascent and molded samples. This differentiation is removed following nitric acid treatment of the nascent flake. Solid-state annealing behavior is differentiated by several regimes. Regime I is characterized by increasing crystallite dimensions and crystallinity at low annealing temperatures. Regime II[a] and II[b] is identified by double melting in DSC scans of moldings and nascent flake, respectively. The double melting is due to partial melting with incomplete recrystallization. Regime II[a] of moldings is differentiated from Regime II[b] of flake by an increase in melting point of the higher melting endotherm. Within Regime II[b], the partial melting of the nascent structure is sensitive to the distribution of morphological stability. Regime III is initiated at annealing temperatures approaching the zero heating rate melting point, and shows melting kinetics by DSC or time-resolved WAXS using synchrotron x-ray radiation. The superheat, partially associated with Regime III behavior, is sensitive to morphological heterogeneity and annealing history. Morphological models are discussed which highlight the role of noncrystalline regions and melting kinetics on the melting behavior of nascent form crystallinity. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 495–517, 1998     

Estimation of microscopic, zwitterionic ionization constants, isoelectric point and molecular speciation of organic compounds

Mathematical models based on structure-activity relationships and perturbed molecular orbital theory have been developed to calculate the ionization pK(a)s for a large number of organic molecules. These models include resonance, direct and indirect electrostatic field effects, sigma induction, steric effects, differential solvation and hydrogen bonding. The thermodynamic microscopic ionization constants, pk(i), of molecules with multiple ionization sites and the corresponding complex speciation as a function of pH have been determined using these chemical reactivity models. For a molecule of interest SPARC (SPARC performs automated reasoning in chemistry) calculates all of the microscopic ionization constants and the fraction of each species as a function pH along with the titration (charge) curve. The system has been tested on several biologically and environmentally important compounds.     

Separation of ternary systems of hydrophilic ionic liquid with miscible organic compounds by RPLC with refractive index detection

A rapid and simple analytical method was developed for the simultaneous and quantitative determination and separation of hydrophilic imidazolium ionic liquids (ILs) (1-butyl-3-methylimidazolium chloride, [C(4)mim]Cl; 1-hexyl-3-methylimidazolium chloride, [C(6)mim]Cl; 1-octyl-3-methylimidazolium chloride, [C(8)mim]Cl; 1-allyl-3-methylimidazolium chloride, [Amim]Cl; or 1-allyl-3-methylimidazolium bromide, [Amim]Br) with miscible ethyl acetate and EtOH and their mixtures using reverse phase liquid chromatography coupled with refractive index detection (RPLC-RI). The influence of 60 to 100% (volume percentage) methanol in the mobile phase on the IL systems ([C(4)mim]Cl, [C(6)mim]Cl, [C(8)mim]Cl, [Amim]Br, or [Amim]Cl)-ethyl acetate-EtOH was investigated. The optimum mobile phase for the system [C(8)mim]Cl-ethyl acetate-EtOH, [C(4)mim]Cl-ethyl acetate-EtOH, [Amim]Br-ethyl acetate-EtOH and [Amim]Cl-ethyl acetate-EtOH was methanol/water (60:40, v/v), and methanol/water (70:30, v/v) for [C(6)mim]Cl-ethyl acetate-EtOH. Under optimum mobile phase conditions for each system, the RSD of the retention time ranged from 0.02 to 0.04%, and the RSDs of the peak area percent ranged from 0.23 to 1.85%, which showed good reproducibility of the RPLC-RI method. The RPLC-RI method can determine IL, ethyl acetate, and EtOH simultaneously in 5 min, and the analytes, especially IL, can be eluted completely. The results show that the RPLC-RI method can be used to separate and determine ILs in mixtures with organic compounds simultaneously and quantitatively.     

Calculation of mass spectra of some organic compounds undergoing two consecutive reactions from the molecular ions

The molecular ions of phenyl benzoate, methyl benzoate, t-butylbenzene, phthalic anhydride, p-dimethoxybenzene, o-dimethoxybenzene and acetophenone each undergo two consecutive reactions ([M]^+.→[A]⁺→[B]⁺). These unimolecular reactions are treated within the framework of the quasi-equilibrium theory (QET); a simple modification of the original equation relating the rate constant (k) with the internal energy (E) was used to calculate mass spectra of the above compounds from 12 to 20 eV. Good agreement between calculated and observed spectra is obtained.