Resonant dissociative electron capture by the simplest amino acids and dipeptides

The formation of ions from amino acids (glycine and alanine) and dipeptides (glycylglycine, alanylalanine, and glycylalanine) under the resonant electron capture conditions was studied by negative ion resonant electron capture mass spectrometry. The isobaric ions were found, their effective yield curves were experimentally separated, and the elemental composition was determined. The thermochemical aspect of ion formation was considered, and probable dissociative channels of fragmentation ion formation and their structures were established on the basis of this aspect. Bond cleavage reactions only and H-shift processes were revealed. The rearrangements occur presumably through the stage of formation of intramolecular hydrogen bonds. The cross-sections of formation of ions [M − H]⁻ were measured in the energy range 1.1–1.3 eV. The metastable decay channels of ions [M − H]⁻ and [M − COOH]⁻ were found in the energy range 4.5–7.5 eV for dipeptides, which enabled establishing the genetic relationship between the parental and daughter ions and revealing hidden fragmentation pathways.     

Resonant electron capture by orotic acid molecules

Resonant electron attachment by orotic acid molecules (6-COOH-uracil) are studied in the energy range of 0–14 eV via negative ion mass spectrometry. Molecular ions, whose lifetimes relative to electron autodetachment are found to be ~300 μs are recorded in the region of thermal electron energies; they form in the valence state through a vibration-excited resonance mechanism. Unlike unsubstituted uracil, most dissociative processes occur in the low-energy region of <4 eV and are due to carboxylic anions. An absolute cross section of 2.4 × 10^?17 cm² is found for the most intense fragment ions [M–H]^– at an output energy of 1.33 eV. The kinetics of decarboxylation is considered for these ions. This could be a model reaction for the last stage of uridine monophosphate biosynthesis.     

Ion-molecule reactions observed for nitroaromatic compounds in negative ion fast atom bombardment mass spectrometry

Analyses of a series of nitroaromatic compounds using fast atom bombardment (FAB) mass spectrometry are discussed. An interesting ion-molecule reaction leading to [M + O ? H]^? ions is observed in the negative ion FAB spectra. Evidence from linked-scan and collision-induced dissociation spectra proved that [M + O ? H]^? ions are produced by the following reaction: M + NO₂^? → [M + NO₂]^? → [M + O ? H]^?. These experiments also showed that M^?˙ ions are produced in part by the exchange of an electron between M and NO₂^? species. All samples showed M^?˙, [M ? H]^? or both ions in their negative ion FAB spectra. Not all analytes studied showed either [M + H]⁺ and/or M⁺˙ in the positive ion FAB spectra. No M⁺˙ ions were observed for ions having ionization energies above ～9 eV.     

Phenol, chlorobenzene and chlorophenol isomers: resonant states and dissociative electron attachment

This paper reports a study of resonant dissociative electron attachment (DEA) to the phenol, chlorobenzene, p-, m-, and o-chlorophenol molecules. On the basis of spectroscopic and thermochemical approaches the resonant states of the molecular negative ions (NIs) and the structures of some dissociative decay products are assigned. In the electron energy range up to 3 eV, DEA processes are determined by the two 2[pi*]-shape resonances resulting mainly in formation of [M-H]- and/or Cl- ions. At higher electron energies the energy correlation between peaks in the negative ion effective yield curves and bands of UV spectra allowed identification of the core-excited resonances. The peculiarities of Cl- ion formation and the vibrational fine structure on the effective yield curves of the [M-H]- ions are discussed. The mass spectrometric procedures for measurement of relative cross sections for NI formation are described.     

The [M?OH]+ ions of m- and p-ethylnitrobenzene: A common structure?

The structures of the [M? OH]⁺ ions of m- and pethylnitrobenzene have been compared by measurements of metastable ion spectra, collisional activation spectra, kinetic energy releases and critical energies for the formation of these ions and their subsequent decomposition. Normalized rates of fragmentation of metastable molecular ions and metastable [M? OH]⁺ ions have been compared for ion lifetimes up to 30 μs. The energy measurements fail to distinguish between the structures of the [M? OH]⁺ ions, but the normalized fragmentation rates and the collisional activation spectra show their structures to be different.     

Fragmentation of certain substituted azadispiro(5.1.5.2)pentadec-9-ene and azadispiro(4.1.4.2)tridec-8-ene derivatives under electron ionization

A study of the electron ionization mass spectra of certain azadispiro(5.1.5.2)pentadec-9-ene-7,15-diones and azadispiro(4.1.4.2)tridec-8-ene-6,13-diones and their derivatives has revealed that these molecules undergo fragmentation primarily by two routes, viz. loss of CO and elimination of the substituent on the pyrrolidine nitrogen. Under positive ionization conditions loss of CO is the predominant process in the diones as it releases the ring strain, while in the 6- or 7-ols loss of the substituent on nitrogen is the favoured pathway. The further decomposition pathways of these primary fragments [M ? CO]⁺˙ and [M ? OR³]⁺ have been delineated with the help of high-resolution mass measurements, D₂O exchange and metastable spectra, These compounds give very simple negative ion spectra showing only [M ? OR³]^? and [NCO]^? ions except the N-hydroxy compounds which show [M ? H]^? ions as well.     

Consecutive reactions in the vitamin D series. A New insight into the mechanism of vitamin D and provitamin D isomerizations in the mass spectrometer

The individual steps of the consecutive reactions arising from metastable molecular ions, derived from vitamin D₃, vitamin D₂ and their respective provitamins (7-dehydrocholesterol, ergosterol), were examined in different field-free regions of a triple-sector mass spectrometer of B/E/E geometry. The comparison of the translational energy release (T) and the metastable peak shapes corresponding to these reactions, as well as unimolecular and collision-induced dissociation mass-analysed ion kinetic energy spectra, showed that there are probably two structures of the [M – H₂O]⁺˙ and [M – CH₃˙]⁺ ions depending upon whether the respective ions are formed in the ion source through high-energy reactions, or from the fragmentation of metastable molecular ions through slow, low-energy processes which occur in the first field-free region.     

Multiple ionization,charge separation and charge stripping reactions involving polycyclic aromatic compounds

The 70 eV electron ionization mass spectra of polycyclic aromatic compounds are characterized by the presence of relatively stable multiply charged molecular ions [M]ⁿ⁺ (n=2–4). When generated from the compounds benzene, napthalene, anthracene, phenanthrene, 2,3-benzanthracene, 1,2-benzanthracene, chrysene, 9,10-benzophenanthrene and pyrene, the relative abundances of the multiply charged ions increase dramatically with the number of rings. These compounds form multiply charged molecular ions (n=2, 3) which undergo unimolecular decompositions indicative of considerable ionic rearrangement. The main charge separation processes observed here [M]²⁺→m₁⁺+m₂⁺, [M]³⁺˙→m₃⁺+m→+m₄²⁺) involve, in almost every case, one or more of the products [CH₃]⁺, [C₂H₃]⁺˙ and [C₃H₃]⁺. This suggests the existence of preferred structures amongst the metastable parent ions. Information on the relative importance of the various fragmentation pathways is presented here along with translational energy release data. Some tentative structural information about the metastable ions has been inferred from the translational energy release on the assumption that the released energy is due primarily to coulombic repulsion within the transition state structure. For the triply charged ions these interpretations have necessitated the use of a coulombic repulsion model which takes account of an extra charge. Vertical ionization energies for the process [M]ⁿ⁺+G→[M](ⁿ⁺¹)+G+e^? (charge stripping) have also been determined where possible for n=1 and 2 and the results from these experiments allow the derivation of simple empirical equations which relate successive ionization energies for the formation of [M]²⁺ and [M]³⁺˙ to the appearance energy of [M]⁺˙.     

Stossaktivierungsspektren von 2-Alkoxybenzoesäuremethylestern

The CA spectra of the [M – Alkene]⁺·- and [M – Alkyl]⁺- ions from several 2-alkoxy-benzoic acid methyl esters and two 2H labelled 2-ethoxybenzoic acid methyl esters are discussed. The results show that the [M – alkene]⁺· ions decomposing after 10^?5 s by collisional activation have the structure of the ionised salicylic acid methyl ester. Moreover, it is demonstrated that the [M – methyl]⁺ ions from the 2-ethoxy esters exist in two different structures. No equilibration between these two structures is observed even after 10^?5s. Structures for several daughter ions generated by collisional activation are discussed using the CA spectra of the labelled compounds.     

Mass spectra of chlorinated aromatics formed in pulp bleaching 2—Chlorinated guaiacols

The fragmentation of chlorinated guaiacols (2-methoxyphenols) on electron impact has been studied. The most common fragmentation processes are interpreted and in some cases the small differences between spectra of positional isomers are explained. In addition to the well-known alkyl-oxygen fission (loss of methyl radical), metastable ion studies and deuterium labelling have indicated several new fragmentation pathways. The most characteristic are the formation of [M? CH₃? HCl]⁺ and [M? CH₃? Cl]^+· ions. In general, however, the spectra of positional isomers are shown to be very similar.     

Mass spectra of chlorinated veratroles (1,2-dimethoxybenzenes)

The behaviour of all nine chlorinated veratroles (1,2-dimethoxybenzenes) under electron impact has been investigated. The most common fragmentation processes are interpreted using metastable ion analysis and deuterium labelled compounds. For all compounds studied, the most common fragmentation route seems to be the primary loss of a methyl radical followed by loss of carbon monoxide. The ion formed has a well-known quinonoid structure and fragments by several routes elucidated by metastable ion analysis. In general, the spectra of the positional isomers are shown to be practically similar and it is apparent that e.g. the 3- and 4-chloro isomers can be differentiated only from the abundance ratio of the [M? CH₃? CO? CH₃]⁺ and [M? CH₃? CO? H₂O]⁺ ions.     

Some PhCNO-containing molecules; mass spectral similarity and molecular diversity

Some diverse compounds possessing a PhC?NO unit cleave the N? O link upon electron impact to give [PhCN]⁺˙. Different and especially significant modes of N? O scission occur in metastable processes when the oxygen atom of the PhCNO group is exocyclic to a heterocyclic nitrogen atom. Upon electron impact, rupture of the N? O bond in PhCNO-containing molecules generally dominates over 1,3-dipolar cycloreversion, which generates the radical cation of benzonitrile oxide. Stable PhCNO-containing molecules survive competing fragmentations in the ion source to produce [M+H]⁺ ions of moderate relative intensity. Other ions, which are larger than [M]⁺ are implicated where M is PhCH?NOR. Several values of m/z for metastable ions are common to compounds which have a PhCNO moiety. These m/z values generally derive both from a parent ion with m/z?105 and from a PhC?NO moiety.     

Bicyclic oxonium ions with an oxygen bridgehead

Electron impact induced fragmentation of 4-(ω-phenoxymethyl and -ethyl)tetrahydn pyranes results in abundant [M ? 93] + ions through loss of a phenoxy radical. These ions are all produced in high yields by isobutane chemical ionization through loss of phenol from the quai molecular ions. Labelling data (²H, ¹³C) provide evidence for the l-oxoniabicyclo[2.2.1]heptane ai l-oxoniabicyclo[2.2.2]octane structures of the electron impact produced decomposing (ion sour and first field free region) ions [M ? 93]L in the case of the methyl and ethyl compounds, respective.     

FAB and chemical ionization in the production of [M+ H]+ and [M− H]− species from 2-aryl-2-methyl-1,3-dithianes

The unimolecular fragmentations of [M + H]⁺ and [M – H]^? ions from four 2-aryl-2-methyl-1,3-dithianes are described and clarified with the aid of deuterated derivatives. Comparison of the MIKE spectra of [M + H]⁺ species obtained under chemical ionization and fast atom bombardment (FAB) conditions reveals differences which are attributed to the different energetics involved in the two ionization processes. It is suggested that FAB is a ‘softer’ ionization technique but, at the same time, it provides, for the possibility of solvation, reaction sites not available in gas-phase protonation. [M – H]^? species and anionic fragments thereof were generally not obtained under FAB(?) conditions. [M – H]^? ions are readily produced in gas-phase reactions with OH^? via proton abstraction from C(4) or C(5), and from the 2-methyl substituent; and they fragment according to several reaction pathways.     

Stereoelectronic control of the retro diels–alder reaction in 8-(N-pyrrolidyl)bicyclo[4.3.0]nona-3,7-diene isomers

The cis- and trans-annulated isomers of 8-(N-pyrrolidyl)bicyclo[4.3.0]nona-3,7-diene show different propensities for the retro Diels–Alder fragmentation following electron impact ionization. Molecular ions of the cis-annulated isomer decompose predominantly via the retro Diels–Alder reaction to give [C₉H₁₃N] ⁺· fragments of the appearance energy (AE)=8.45±0.05eV and critical energy E_c=133±8kJ mol^?1. The trans-annulated isomer gives abundant [M–H]⁺ (AE=9.34±0.08eV) and [M–C₆H₆]⁺· fragments, in addition to [C₉H₁₃N]⁺· ions of AE=8.98±0.05eV and E_c=181±8kJ mol^?1. The ionization energies (IE) were determined as IE_cis=7.07±0.05 eV and IE_trans=7.10±0.06eV. The stereochemical information is much less pronounced in unimolecular decompositions of long-lived (metastable) molecular ions which show very similar fragmentation patterns for both geometrical isomers. Nevertheless, the isomers exhibit different kinetic energy release values in the retro Diels–Alder fragmentation; T_0.5=3.8±0.3 and 4.8±0.2 kJ mol^?1 for the cis and trans isomer respectively. Topological molecular orbital calculations indicate that the retro Diels–Alder reaction prefers a two-step path, with a subsequent cleavage of the C(5)? C(6) and C(1)? C(2) bonds. The open-ring distonic intermediate represents the absolute minimum on the reaction energy hypersurface. The cleavage of the C(1)? C(2) bond is the rate-determining step in the decomposition of the cis isomer, with the critical energy calculated as 137 kJ mol^?1. The cleavage of the C(5)? C(6) bond becomes the rate-determining step in the trans-annulated isomer because of stereoelectronic control. The difference in the energy barriers to this cleavage in the isomers (ΔE=95k Jmol^?1) provides a quantitative estimate of the magnitude of the stereoelectronic effect in cation radicals.     

Processes of dissociative electron capture by 20-hydroxyecdysone molecules

The peculiarities of dissociative electron capture by 20-hydroxyecdysone molecules with the formation of fragment negative ions were studied. In the region of high electron energies (5–10 eV), processes of skeleton bond rupture are accompanied by the elimination of H₂O and H₂ molecules. In the region of thermal energies of electrons (≈0 eV), the mass spectrum is formed mainly by the [M−nH₂O]^.− (n=1–3) and [M−H₂−nH₂O]^.− (n=0−3) ions that are generated exclusively by the rearrangement. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 709–712, April, 2000.     

The nature of the [C2H6N]+ and [CH4N]+ ions formed by electron impact on methylated formamides,acetamides, ureas,thioureas and hexamethylphosphoramide

By means of appearance potential measurements and metastable analysis, it is shown that the [C₂H₆N]⁺ and [CH₄N]⁺ ions formed from methylated formamides, acetamides, ureas and thioureas rearrange upon formation to structures similar to the [M? H]⁺ ions from mono- and dimethylamine.     

Electron impact,chemical ionization and negative chemical ionization mass spectra,and mass-analysed ion kinetic energy spectrometry–collision-induced dissociation fragmentation pathways of some deuterated 2,4,6-trinitrotoluene (TNT) derivatives

Mass-analysed ion kinetic energy spectrometry (MIKES) with collision-induced dissociation (CID) has been used to study the fragmentation processes of a series of deuterated 2,4,6-trinitrotoluene (TNT) and deuterated 2,4,6-trinitrobenzylchloride (TNTCI) derivatives. Typical fragment ions observed in both groups were due to loss of OR′ (R′ = H or D) and NO. In TNT, additional fragment ibns are due to the loss of R₂′O and 3NO₂, whilst in TNTCI fragment ions are formed by the loss of OCI and R₂′OCI. The TNTCI derivatives did not produce molecular ions. In chemical ionization (Cl) of both groups. MH⁺ ions were observed, with [M – OR′]⁺ fragments in TNT and [M – OCI]⁺ fragments in TNTCI. In negative chemical ionization (NCI) TNT derivatives produced M^?′, [M–R′]^?, [M–OR′]^? and [M–NO]^? ions, while TNTCI derivatives produced [M–R]^?, [M–Cl]^? and [M – NO₂]^? fragment ions without a molecular ion.     

A fast atom bombardment and field ionization/field desorption study of some isomeric unsaturated dicarboxylic acids

Geometrically isomeric dicarboxylic acids, such as maleic and fumaric acid and their methyl homologues, and the isomeric phthalic acids, have been investigated using fast atom bombardment, field ionization and field desorption mass spectrometry. The most intense peak in the positive ion fast atom bombardment spectra corresponds with the [M + H]⁺ ion. This ion, when derived from the E -acids, tragments either by successive loss of water and carbon monoxide or by elimination of carbon dioxide. In the case of the Z -acids only elimination of water from the [M + H]⁺ ions is observed to occur to a significant extent. The same is true for the [M + H]⁺ ions of the isomeric phthalic acids, that is the [M + H] ions derived from iso- and terephthalic acid exhibit more fragmentation than those of phthalic acid. All these acids undergo much less fragmentation upon field ionization, where not only abundant [M + H]⁺ ions, but also abundant [M]^+· ions, are observed. Upon field desorption only the [M + H]⁺ and [M + Na]⁺ ions are observed under the measuring conditions. Negative ion fast atom bombardment spectra of the acids mentioned have also been recorded. In addition to the most abundant [M? H]^? ions relatively intense peaks are observed, which correspond with the [M]^?˙ ions. The fragmentations observed for these ions appear to be quite different from those reported in an earlier electron impact study and in a recent atmospheric pressure ionization investigation.     

The fragmentation of 5-phenyl-1,4-benzodiazepin-2-ones. Mechanism for the formation of [M ? H]+

The fragmentations under electron impact of 5-phenyl-1,4-benzodiazepin-2-ones are investigated with the aid of high resolution, metastable decompositions and deuterium labeling. Based on our data a mechanism for the formation of the [M – H]⁺ ion is proposed. It is shown that the [M – CHO]⁺ ion is probably formed by two different pathways. Data on two minor fragment ions give support to the structure proposed for the [M – CHO]⁺ ion.