Design of crystal packings of styryl heterocycles and regularities of [2+2] photocycloaddition in their single crystals 8. Topochemical [2+2] autophotocycloaddition and back reaction in styryl dye of the benzothiazole series

New styryl dye of the 2-benzothiazole series was synthesized. The new dye contains two methoxy groups in the benzene ring and tosylate counterion. The [2+2] photocycloaddition (PCA) of the dye was studied in the polycrystalline film and in single crystal. Two modifications of the dye cocrystallizate with hydroquinone differed in the ratio of components were obtained, and their ability to enter PCA was studied. According to the X-ray diffraction data, molecular cations of the dye form stack packings either of syn-“head-to-tail” type or relatively isolated stacking dimers. In all cases, the ethylene bonds of the adjacent cations are brought together and antiparallel, favoring PCA to form the centrosymmetric rctt-isomer of 1,2,3,4-tetrasubstituted cyclobutane. In two cases, the PCA reaction proceeded as the “single crystal-to-single crystal” transformation. Hydrogen bonds in crystals including hydroquinone molecules strengthen the crystal packing retarding the PCA. The back photoreaction (retro-PCA) was detected: it occurs without single crystal decomposition and results in the accumulation of the initial styryl dye in crystal consisting of the cyclobutane derivative. This is the first example of such a transformation in single crystals.     

A comprehensive conformational analysis of tryptophan,its ionic and dimeric forms

Tryptophan is an essential amino acid, and understanding the conformational preferences of monomer and dimer is a subject of outstanding relevance in biological systems. An exhaustive first principles investigation of tryptophan ( W ) and its ionized counterparts cations (WC) , anions (WA) , and zwitterions (WZ) has been carried out. A comprehensive and systematic study of tryptophan dimer (WD) conformations resulted in about 62 distinct minima on the potential energy surface. The hydrogen bonds and a variety of noncovalent interactions such as OH‐π, NH‐π, CH‐π, CH‐O, and π‐π interactions stabilized different forms of tryptophan and its dimers. Over all in monomeric conformers which have NH‐O, hydrogen bonds showed higher stability than other conformers. A cursory analysis reveal that the most stable dimers stabilized by hydrogen bonding interactions while the less stable dimers showed aromatic side chain interactions. Protein Data Bank analysis of tryptophan dimers reveals that at a larger distance greater than 5 Å, T‐shaped orientations (CH‐π interactions) are more prevalent, while stacked orientations (π‐π interactions) are predominant at a smaller distance. © 2013 Wiley Periodicals, Inc.     

Decavanadates with [Et3NH] and [Me2HN(CH2)2NHMe2]: Variation in protonation state and self-assembly

Synthesis, thermal behaviour and crystal structures of [Et₃NH]₄[V₁₀O₂₆(OH)₂] (1) and [Me₂HN(CH₂)₂NHMe₂]₃[V₁₀O₂₈] · 4H₂O (2) are reported. In the crystal lattice of 1, the anions form discrete dimers via O–H···O hydrogen bonds and the cations are connected to the respective anions through N–H···O hydrogen bonds. On the other hand, 2 forms a complex three-dimensional network due to involvement of the cations, the anions and the lattice water in O–H···O and N–H···O hydrogen bonds.     

Water-assisted assembly of (E)-arylvinylpyridine hydrochlorides: effective substrates for solid-state [2+2] photodimerization

Water molecules assist the assembly of (E)-arylvinylpyridine hydrochlorides in a head-to-tail and face-to-face fashion by way of N-HO hydrogen bonds in combination with cation-π interactions between the pyridinium and aromatic rings. Photolysis of the pyridinium salt hydrates provided synHT dimers in high yields.     

Stereospecific [2+2] photocycloaddition in a pseudodimeric complex between N-ammoniopropylstyrylpyridine and 18-crown-6-containing styrylpyridine

A quaternary 4-styrylpyridinium salt having the N-ammoniopropyl substituent forms a pseudodimeric head-to-tail complex with neutral 18-crown-6-containing 4-styrylpyridine in MeCN through H-bonding. This complex undergoes stereospecific [2+2] photocycloaddition due to preorganization of the ethylene bonds in the syn-arranged chromophoric fragments of the components. The structure of the rctt-isomer of the cyclobutane derivative obtained was established by NMR spectroscopy and X-ray diffraction analysis.     

Interaction of thiamine with anions in the triclinic form of thiamine iodide: 3‐[(4‐amino‐2‐methylpyrimidin‐5‐yl)methyl]‐5‐(2‐hydroxyethyl)‐4‐methyl‐1,3‐thiazol‐3‐ium iodide 1.25‐hydrate

The asymmetric unit of the title compound, C₁₂H₁₇N₄OS⁺·I⁻·1.25H₂O, contains two crystallographically independent molecules. Both formula units assume the usual F conformation and have the hydroxyethyl group disordered over two sites, each with half occupation. Two thiamine cations are linked by hydrogen bonds into a cyclic dimer. These dimers are further connected by base‐pairing hydrogen bonds into a chain along [010]. The stacked dimers form channels, which are occupied by iodide anions. The cations and anions are associated by N—H...I hydrogen bonds, C—H...I interactions and I...thiazolium ring close contacts. The interactions between thiamine and the iodide anions are similar to those observed in monoclinic thiamine iodide 1.5‐hydrate [Hu & Zhang (1993). J. Inclusion Phenom. Mol. Recognit. Chem. 16 , 273–281].     

Hexaazamacrocyclic nickel and copper complexes and their reactivity with tetracyanoquinodimethane

The hexaazamacrocycle 1,4,7,10,13,16-hexaazacyclooctadecane, [18]ane-N6, forms mono- and dinuclear derivatives with copper chloride depending on the reaction stoichiometries and times. The mononuclear derivative, [Cu([18]ane-N6)]Cl2.H2O, presents the macrocycle wrapped around the metal atom in a distorted octahedral coordinative environment, while the dinuclear derivative, [Cu2([18]ane-N6)Cl2]Cl2.4H2O, is formed by a central Cu2Cl2 core surrounded by an almost planar macrocycle. The crystal structure of both derivatives is stabilized by a network of hydrogen bonds involving the amine macrocyclic groups, the chloride anions, and the crystallization water molecules. The copper atoms in the dinuclear derivative show a strong antiferromagnetic coupling, as expected for the crystal structure parameters. A mononuclear nickel derivative has also been obtained from nickel nitrate by following the same synthetic procedure. These compounds react with TCNQ salts with formation of two types of derivatives, [M([18]ane-N6)](TCNQ)2 and [M([18]ane-N6)](TCNQ)4, depending on the use of radical-anionic or mixed-valence TCNQ salts in the reaction. The crystal structures of the nickel derivatives show that the former derivatives are built up by macrocyclic metal cations surrounded by dimeric dianions (TCNQ)22-, either isolated or stacked along the crystal. The derivative with four TCNQ units/formula consists of alternated chains of metallomacrocyclic cations and stacked TCNQ anions. The crystal parameters suggest that every TCNQ holds approximately 0.5 electrons and overlaps with a neighboring unit to form dimeric monoanions, (TCNQ)2-.     

Crystallographic report: Diisopropylammonium [3‐(2‐thienyl)‐2‐sulfanylpropenoato]triphenylstannate

The title compound comprises trigonal bipyramidal SnPh₃(tspa) anions and ⁱPr₂NH₂ cations linked into centrosymmetric dimers by N? H·O hydrogen bonds. Copyright © 2004 John Wiley & Sons, Ltd.     

Crystal structure and two-level supramolecular organization of glycinium triiodide

Glycinium triiodide was synthesized and its crystal structure was determined. The crystal structure consists of alternating asymmetric triiodide anions characterized by Raman spectroscopy and glycinium cations. The cations and anions form dimers (GlyH)₂(I₃)₂via (N)H···O, (N)H···I, and (O)H···I hydrogen bonds. The dimers are further linked into chains by secondary I···I interactions between adjacent triiodide anions. The supramolecular structure of glycinium triiodide is discussed in comparison with polyiodides of various cations.

     

咪唑配合物[Co(C3H4N2)6](PhCHCHCOO)2的合成及晶体结构

The complex [Co(Im)6](Cin)2 (Im=imidazole,Cin=cinnamate) was prepared by reaction of Co(PhCHCHCOO)2 with imidazole in ethanol. It has been determined by single crystal X-ray analyses. The crystals are triclinic, space group P, with a=9.7601(3),b=10.5935(3),c=11.3269(2)(A),α =69.948(1),β =71.027(1),γ =62.803(1)°, and Z=1. The crystal structure of the title complex consists of monomeric [Co(Im)6]2+ cations and cinnamate anions in which the cobalt(Ⅱ) ion assumes a centrosymmetric octahedral geometry with the CoN6 chromophore. In the solid state, the complex forms a three dimensional network through N-H… O hydrogen bonds, the intermolecular hydrogen bonds connect the [Co(Im)6]2+ cations and cinnamate anions.The cinnamate anions are nearly planar.     

Unusual supramolecular assembly and nonlinear optical properties of l-histidinium hydrogen malate

A new nonlinear optical material, l-histidinium hydrogen malate, has been synthesized. The crystal structure was determined at 90 K by single-crystal X-ray diffraction in order to analyze its supramolecular structure. A new building block type has been found. The malate anions form head-to-side infinite chains parallel to [100], via O-H?O interactions, instead of the usual head-to-tail infinite chains found in other hydrogen malate salts. The l-histidine cations form chains parallel to [100] via N-H?O hydrogen bonds, with cations of adjacent chains in anti-parallel way. The compound shows a good optical second-harmonic generation capability with an effective second-order susceptibility estimated to be 0.70 of that for potassium dihydrogen phosphate.     

Ethyl­tri­phenyl­phospho­nium perrhenate and (iodo­methyl)­tri­phenyl­phospho­nium perrhenate

Ethyl­tri­phenyl­phospho­nium perrhenate, (C₂₀H₂₀P)[ReO₄], and (iodo­methyl)­tri­phenyl­phospho­nium perrhenate, (C₁₉H₁₇IP)[ReO₄], have been crystallized from 2‐propanol. Both crystal structures consist of phospho­nium cations and perrhenate anions. The cations show the typical propeller‐like geometry. In both crystals, the positions of the nearly tetrahedral anions are stabilized by weak C—H⋯O hydrogen bonds, and for the latter compound, I⋯π interactions also occur.     

N‐Methyl­pyridinium 3‐cyano‐4‐(di­cyano­methyl­ene)‐5‐oxo‐4,5‐di­hydro‐1H‐pyrrol‐2‐olate

The crystal structure of the title compound, C₆H₈N⁺·C₈HN₄O₂⁻, is characterized by three independent ion pairs (A, B and C) in the asymmetric unit. Each ion pair consists of an anion and a cation, and the three ion pairs have similar geometric parameters. All the anions are arranged as dianion dimers via two N—H⋯O hydrogen bonds and the dimers form one‐dimensional columns parallel to the b axis as a result of π–π interactions. The cations are also stacked, in two different ways: one type of stacking consists of alternating A and B cations, while the other type consists of C cations only. Each dianion dimer stack is surrounded by eight stacks of cations and is not connected directly to other dianion stacks.     

Molecular and crystal structure of 4,6,6-trimethyl-2-oxo-5,6-dihydro-2H-pyran-3-carbonitrile and 4,6,6-trimethyl-2-oxo-1,2,5,6-tetrahydropyridine-3-carbonitrile

Single crystals of 4,6,6-trimethyl-2-oxo-5,6-dihydro-2H-pyran-3-carbonitrile and 4,6,6-trimethyl-2-oxo-1,2,5,6-tetrahydropyridine-3-carbonitrile were prepared and submitted to X-ray diffraction analysis. Both compounds have a molecular structure belonging to the C₁ symmetry group. The heterocyclic rings are in a distorted envelope conformation. The crystals belong to the monoclinic system and each contain four molecules in the unit cell. In the crystal the pyridine derivative exists in the form of centrosymmetric dimers stabilized by intermolecular hydrogen bonds between the oxygen atoms of the carbonyl group and the hydrogen atom at the nitrogen atom of the ring. __________ Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1620–1624, November, 2007.     

New 1:3 type nickel-bis(dithiolene) salt (FcCHCHPymCH3)[Ni(dmit)2]3 (dmit: 2-thioxo-1,3-dithiole-4,5-dithiolate): its electrocrystallization, crystal structure, electrical properties, and electronic band structure analysis

Black single crystals of Ni(dmit)(2) complex (dmit: 2-thioxo-1,3-dithiole-4,5-dithiolate) with trans-4-[2-(1-ferrocenyl)vinyl]-1-methylpyridinium chromophore as a countercation, (FcCHCHPymCH(3))[Ni(dmit)(2)](3), were prepared by the electrocrystallization technique. In the triclinic structure of the complex (P, a = 11.430(5) A, b = 13.349(2) A, c = 19.355(6) A, alpha = 75.15(2) degrees , beta = 79.19(3) degrees , gamma = 82.12(2) degrees , Z = 2), Ni(dmit)(2) anion layers are separated by the cations with a relatively rare 1:3 cation-to-anion ratio. Detailed crystal and electronic structure analysis revealed that the anions are stacked in the layers to form alternating dimers and monomers rather than trimers. The measured electrical conductivity indicates a semiconducting property of the compound with an estimated energy gap of 0.06 eV. The calculated LUMO bands are very narrow, and the semiconducting behavior is more likely due to the electron localization mainly on the dimers, consistent with the observed longer Ni-S bond distances in the dimers.     

Crystal Structures of Fluoride and Chloride Complexes of Tris[（2-benzimidazolyl）methyl]amine

The crystal structures of fluoride and chloride complexes of tris[（2-benzimidazolyl）methyl]amine 1 were characterized by X-ray crystallography. 1 adopts （73 symmetrical geometry and cone-like conformation so as to allow its three NHs to associate with the anions through hydrogen bonds. Despite the different sizes of the anions, the two crystals are unexpectedly isostructural. The binding ability of the anions of 1 in solution was also studied by using of UV-vis spectroscopy.     

Photoinduced transformations in single crystals of 1,2-bis(2-[(<Emphasis Type="Italic">E</Emphasis>)-3-oxo-3-phenylprop-1-enyl]phenoxy)ethane and 1,5-bis(2-[(<Emphasis Type="Italic">E</Emphasis>)-3-oxo-3-phenylprop-1-enyl]phenoxy)-3-oxapentane

Differences in the parameters of pre-organization of chalcone podands to intermolecular photoinduced [2+2] cycloaddition (PCA) in crystals were discovered. As a result of PCA, the chalcone podand with two oxyethylene units forms stereoregular cyclobutane-containing polymer chains over the whole volume of the single crystal. In the case of the chalcone podand with one oxyethylene unit, the PCA reaction in single crystal becomes impossible; however, its mechanical destruction results in the formation of surface layers with stacking dimers. In these layers, photodimerization occurs due to a decrease in topochemical control from the molecular lattice.     

Solid-State Photochemical [2+2] Cycloaddition Reaction of MnII Complexes

Three Mn^II complexes have been synthesized under similar experimental conditions. Of these [Mn₂(benzoate)₄(L)₂] (where L=4-styrylpyridine or 4spy, 1 and 2-fluoro-4′-styrylpyridine or 2F-4spy, 3 ) are paddlewheel complexes, but crystallized in different space groups. Whereas [Mn₂(benzoate)₄(3F-4spy)₄] (3F-4spy=3-fluoro-4′-styrylpyridine), 4 is a dinuclear complex having different stoichiometry from 1 and 3 with two pairs of 3F-4spy ligands aligned in face-to-face manner. An irreversible phase transition occurs from the space group P2₁/c to C2/c when 1 was heated up to 125 °C to 2 in a single-crystal-to-single-crystal fashion or when ground 1 to powder. 2 is isomorphous and isostructural to 3 . Complimentary π–π interactions in head-to-tail alignment of the styrylpyridine ligands furnishes 1D aggregates in 1 – 3 which are congenial to undergo [2+2] cycloaddition reaction under UV light. Whereas, face-to-face alignment of the 4spy pairs in 4 is expected to provide a head-to-head photoproduct. All the Mn^II complexes are indeed found to be photoreactive. To our surprise, contrary to their Zn^II analogues, 2 and 3 were not found to be photosalient. The percentage volume expansion during the photoreaction as determined from the density measurements, was found to be too low (3.2 and 4.6 % respectively for 2 and 3 ) to have this behavior.     

Recognition of N‐Alkyl and N‐Aryl Acetamides by N‐Alkyl Ammonium Resorcinarene Chlorides

N‐Alkyl ammonium resorcinarene chlorides are stabilized by an intricate array of intra‐ and intermolecular hydrogen bonds that leads to cavitand‐like structures. Depending on the upper‐rim substituents, self‐inclusion was observed in solution and in the solid state. The self‐inclusion can be disrupted at higher temperatures, whereas in the presence of small guests the self‐included dimers spontaneously reorganize to 1:1 host–guest complexes. These host compounds show an interesting ability to bind a series of N‐alkyl acetamide guests through intermolecular hydrogen bonds involving the carbonyl oxygen (C?O) atoms and the amide (NH) groups of the guests, the chloride anions (Cl^?) and ammonium (NH₂⁺) cations of the hosts, and also through CH ??? π interactions between the hosts and guests. The self‐included and host–guest complexes were studied by single‐crystal X‐ray diffraction, NMR titration, and mass spectrometry.     

Crystal structure and dielectric property of supramolecular macrocyclic[(NDPA).(18-crown-6)]~(2+)·(DMA)~+·3ClO_4~-assemblies

One novel organic-inorganic hybrid supramolecular assemblies |(NDPA)(18-crown-6)]~(2+)(DMA)~+·3ClO_4~-(1),has been successfully constructed through the prominent strategies of crystal engineering(NDPA = N,N-dimethyI-1,4-phenylenediamine,DMA = dimethylamine),and characterized by IR,powder XRD and single crystal X-ray diffraction.In the structure,the supramolecular organic cations and inorganic ClO_4~- anions are arranged alternately and linked by N-O…H hydrogen bonds.It is worthy to note that the ClO_4~- are linked to form one-dimensional inorganic chain through strong NH…O hydrogen bonds along b-axis.There is no distinct dielectric anomaly in the temperaturedependent and frequency-dependent dielectric constant curves,suggesting that no phase transition exists within the measured temperature range(120-420 K).The relative displacement of cations and anions,the turned polarization of molecular electric moment and macrocyclic molecule rotator are the main factors to determine the trend of dielectric constant.