Reeling in the catch: advancing cleavable linkers for proteomics

In global proteomic applications that focus on the characterization of proteins that have been derivatized using bioorthogonal chemistry, a challenge persists in the release of labeled proteins from supports used for purification. In this issue, Yang and coworkers (2010) present a detailed study of the diazobenzene-cleavable linker system as an effective solution for proteomic studies.     

An oxidatively-activated safety catch linker for solid phase synthesis

A N-benzyl-4-amino-2,2-dimethylbutanoic acid-based system has been developed as a new oxidatively activated safety catch linker for reaction monitoring and optimisation on solid support. The CAN promoted oxidative debenzylation of the tertiary N-benzylamine moiety, followed by concomitant cyclisation and release of alcohols and amines has been demonstrated both in solution phase model studies and on the solid phase. The linker system has been applied to the solid phase synthesis of a collection of phenol derivatives, and to the demonstration of the attachment and release of a chiral auxiliary from a solid support.     

A convenient one-pot preparation and applications of high loading benzhydrylamine solid phase linkers

A rapid and convenient one-pot route to solid supported benzhydrylamine linkers with high chemical loading is described. Such linkers possess differing levels of acid lability, which could be exploited in solid phase synthesis applications. They have also been utilised to prepare novel and potentially useful N-methylated derivatives. We also report an effective on-resin purification strategy for reductive amination, which is facilitated by the varying acid lability of resin-linked secondary amines or tertiary amine by-products.     

3-(4-Hydroxymethylphenylsulfanyl)propanoic acid (HMPPA) as a new safety catch linker in solid phase peptide synthesis

A new safety catch linker, 3-(4-hydroxymethylphenylsulfanyl)propanoic acid (HMPPA), is described for use in solid phase peptide synthesis. The linker is readily synthesized from commercially available chemicals in a more cost efficient way compared to similar reported linkers. The HMPPA linker is easily attached to an amino derivatized solid support followed by on-resin oxidation of the thioether to sulfoxide, thereby making the linker very stable towards strong acid treatment. Final resin cleavage is performed by reductive acidolysis.     

A base labile handle for solid phase organic chemistry

Several arylsulfonamides have been synthesised on solid phase using a new base labile handle. Cleavage from the solid support is accomplished by oxidation of the sulfide to the sulfone, followed by β-elimination in base media.     

Approaches to the solid phase of a cyclotriveratrylene scaffold-based tripodal library as potential artificial receptors

Two versatile tripodal cyclotriveratrylene (CTV)-based scaffolds (7 and 9) have been prepared for the solid phase construction of libraries of tripodal artificial synthetic receptors. A 2197-member library of CTV-based tripodal receptor molecules, 20[1-13,1-13,1-13], was prepared on the solid phase using split-mix synthesis. The CTV-based receptors contain three peptide arms; one of them is attached to the solid phase and is different from the other two identical peptide arms.     

Site-selective, cleavable linkers: quality control and the characterization of small molecules on microelectrode arrays

A "safety-catch" linker strategy has been used to release a portion of the products of a Diels-Alder reaction conducted on a microelectrode array for characterization of stereochemistry. The attachment and cleavage of organic compounds from the surface of selected electrodes in the array can be accomplished by site-selective generation of base or acid at the electrode. It was found that the surface of the array had a minor influence on the stereochemistry of the Diels-Alder reaction, leading to slightly more of the exo-product relative to a similar solution-phase reaction.     

A solid phase library synthesis of hydroxyindoline-derived tricyclic derivatives by Mitsunobu approach

Hydroxyindoline-derived scaffold, 9, was synthesized with the goal of generating a library of indoline-based natural product-like tricyclic derivatives to be utilized as small-molecule chemical probes. The tricyclic ring was obtained by a Mitsunobu reaction of the N-nosyl amino acid conjugate with the primary hydroxyl group. The solid-phase synthesis was achieved by immobilizing scaffold 9 onto the solid support giving a compound, 15. This was then subjected to a series of reactions on solid phase, including the Mitsunobu reaction, leading to the desired indoline-derived tricyclic derivative. The final product has two diversity sites: (i) amino acid as the first diversity and (ii) amidation of the secondary amine for the second diversity. These two diversity sites were utilized in the library generation by IRORI split-and-mix approach.     

Chemically sensitive high throughput parallel analysis of solid phase supported library members

This paper introduces Fourier transform infrared imaging as a powerful spectroscopic tool for the parallel identification of members of resin-supported combinatorial libraries. This technique combines the chemical specificity and high sensitivity of FTIR with the ability to rapidly analyze multiple supported resin beads simultaneously. It is shown here that the chemical identity of ligands on a variety of supported resin beads can be identified in a single experiment without destroying or otherwise perturbing the system.     

A spiroisoxazolinoproline-based amino acid scaffold for solid phase and one-bead-one-compound library synthesis

An efficient, multigram synthesis of a spiroisoxazolinoproline-based amino acid, 7, requiring minimal purification, delivering good cis:trans diastereoselectivity (approximately 1:4), and providing good yields is reported. Surface-bound studies of the reduction of an arylnitro group in the presence of an isoxazoline ring with tin(II) dichloride dihydrate were undertaken to confirm the stability of the isoxazoline ring. Full derivitization of this spiroisoxazolinoproline-based amino acid scaffold was performed during the synthesis of a sample library with high yields and high purity that validated the efficiency of the chemistry that was employed in resin-bound library synthesis. A 129,600 member one-bead-one-compound (OBOC) library based on the scaffold 7 was synthesized utilizing a dual amino acid encoding method and bifunctionalization of TentaGel resin.     

The parallel synthesis of a disaccharide library using a solid phase, peptide-templated strategy

A novel strategy for the synthesis of oligosaccharides, involving the use of a solid phase peptide template, has been successfully applied to the construction of a twelve member disaccharide library.     

Application of aryloximes as solid-phase ketone linkers

In both solution and the solid phase, a variety of ketone oxime anions have been treated with 4-substituted-2-fluorobenzonitriles to give the corresponding nucleophilic aromatic substitution aryloxime adducts. Under aqueous acidic conditions, these adducts underwent cyclization to give the corresponding ketones. Suzuki and amide coupling reactions were also successfully performed on two resin-bound oximes followed by subsequent cyclorelease to give ketone product in good yields and purities. [reaction--see text]     

Montmorillonite-supported KF/CaO: a new solid base catalyst for biodiesel production

Biodiesel is an alternative to petroleum-derived diesel fuel; development of a high-efficiency base catalyst to be used in heterogeneous biodiesel production is still a challenge. In this paper, a novel solid base catalyst, KF- and CaO-supported montmorillonite (KCa/MMT) was successfully synthesized by a facile impregnation method, and used for producing biodiesel in transesterification of commercial soybean oil with methanol. The catalysts were characterized by X-ray diffraction, carbon dioxide temperature-programmed desorption and scanning electron microscopy. Effects of the parameters, such as the loading amount of KF, the amount of KCa/MMT, and the methanol to oil molar ratios, on the yield of biodiesel were investigated. A maximum biodiesel yield of 98 % was obtained under the optimal reaction conditions. The separated catalyst can be directly used in the next round of reactions and gave a satisfactory yield. Furthermore, analysis of the catalyst's tolerance to oil-containing water or free fatty acids, and a kinetic study were also carried out. Koros–Nowak tests were designed and conducted, and it was proven that the heat and mass transfer were not limited by the reaction rate.     

A new germanium-based linker for solid phase synthesis of aromatics: synthesis of a pyrazole library

An efficient synthesis of chlorogermane linker 12 is described. Economic introduction of germanium into this linker is accomplished by insertion of dichlorogermylene [from germanium(IV) chloride] into the homobenzylic C-Cl bond of 4-(2-chloroethyl)phenol 1. Using linker 12, transmetalation with lithiated 4-acetophenone, 3-acetophenone, and 4-(4'methoxy)biphenyl followed by Mitsunobu-type coupling to Argogel gives functionalized resins 14, 16, and 18, respectively. Treatment of resin 18 with TFA, ICl, Br2, or NCS effects clean ipso-degermylation releasing biphenyls 19-22, respectively. Resins 14 and 16 are employed for the parallel synthesis of a library of pyrazoles by enaminone formation (using Bredereck's reagent), condensative ring-closure (using a series of monosubstituted hydrazines), and cleavage (using TFA and Br2). Analysis of this library reveals the influence of the hydrazine substituent on both the regioselectivity of ring-closure and the propensity for electrophilic substitution at the 4-position of the pyrazoles during ipso-degermylative cleavage.     

Application of microwave method to the solid phase synthesis of pseudopeptides containing ester bond

A new procedure was developed for reducing the reaction time and improving the yield of esterification reaction in solid phase synthesis of pseudopeptides containing an ester bond by utilizing microwave irradiation. We selected a pseudodipeptide (Fmoc-LysΨ[COO]Leu-NH₂) and optimized the microwave-assisted esterification reaction in solid phase synthesis using Fmoc chemistry. For this, microwave-assisted esterification reactions with different reaction time, temperature, and solvents were performed using 1,3-diisopropylcarbodiimide (DIC) as the coupling reagent. We synthesized several pseudodipeptides containing an ester bond by using the optimized microwave irradiation method. The purity and yield of the pseudodipeptides synthesized in this way were better than those obtained without microwave irradiation. Furthermore, we applied this methodology for synthesizing pseudopeptides (6- and 12-mer) corresponding to the α helical peptide. The microwave-assisted esterification reaction afforded the target pseudopeptides with high yield (∼80%) and purity within 12 min, whereas the reaction without microwave irradiation afforded the target compound with poor yield (∼45%) and low purity.     

Application of gel-phase 13c-nmr to monitor solid phase peptide synthesis

The results presented in this article show the general applicability of gel-phase ¹³C-NMR to monitor solid phase peptide synthesis on the most commonly used polystyrene-based resins. The optimal conditions to acquire gel-phase ¹³C-NMR spectra of copoly(styrene-l%-divinylbenzene) has been determined. The technique proved to be applicable to characterize polystyrene-based starting supports as well as to the determination of their degree of functionality and purity. The stage-by-stage ¹³C-NMR characterization of the growing peptide chain during the synthesis of tripeptide H-Asn-(N-Me)Ala-Thr-NH₂ on a benzhydrylamine resin is described. The structural information, derived from this technique is relevant for the synthetic process as the spectra can be acquired under similar conditions. The characteristics of the spectra facilitate monitoring of coupling and deprotection reactions.     

Construction of 6-amino-2,2-dimethyl-3,4,6-trisubstituted-2H-1-benzopyran library by solid phase synthesis

We report the solid-phase library construction of 2000 analogues of 6-amino-2,2-dimethyl-3,4,6-trisubstituted-2H-1-benzopyran. The polymer-bound hydroxyalkoxychromanes 5, produced by nucleophilic reactions with various alcohols on epoxides generated in situ, served as key intermediates for subsequent diversification. Further reactions on these hydroxyalkoxychromanes 5 with various electrophiles, such as alkyl halides and acid halides, produced the desired 6-amino-2,2-dimethyl-3,4,6-trisubstituted-2H-1-benzopyran analogues 9, 10, and 11. The progress of reactions could be monitored as solid-bound intermediates by ATR-FTIR or HR-MAS-NMR spectroscopy. The final compounds, obtained in good yields and high purity upon cleavage from the resins, were characterized by LC/MS, HRMS, (1)H NMR, and (13)C NMR spectroscopy.     

磁性固相萃取在检测抗抑郁药中的应用进展

作为治疗抑郁、焦虑、强迫等精神障碍疾病的主要药物,抗抑郁药的消耗量逐年增大.针对涉及抗抑郁药滥用的各类案件,物证鉴定人员需对药物的种类及含量进行分析.为准确、灵敏地检测实际检材中的抗抑郁药,样品前处理过程必不可少.磁性固相萃取采用比表面积大、分散性能好、可重复使用的各类功能化磁性材料作为吸附剂,因操作简单快速、萃取效率...     

一种亲水-亲油复合固相萃取填料的制备及其在食品安全检测中的应用

合成了一种以二乙烯苯和N-乙烯吡咯烷酮为单体的高分子聚合物固相萃取填料(DVB-NVP),以6种不同极性的化合物为模型化合物,结合高效液相色谱法(HPLC)对该填料进行了系统的评价,并与传统的C18填料及商品化同类型填料做对比;对填料进行了磺酸化修饰(DVB-NVP-SO₃H),并将合成的填料应用于复杂基质中化合物的分析。结果表明:该填料对不同极性化合物的回收率在95.55%~101.08%之间,优于商品化C18填料,与商品化同类型填料相当。DVB-NVP对于白酒中邻苯二甲酸二甲酯、邻苯二甲酸二乙酯、邻苯二甲酸二丁酯的分析回收率分别为102.55%、102.99%、102.11%,相对标准偏差分别为2.11%、1.69%、0.79%; DVB-NVP-SO₃H用于对猪肉中的可乐定和赛庚啶进行分析,回收率分别为89.23%和91.42%,相对标准偏差分别为8.21%和8.86%,符合生物样品分析要求。所合成的填料具有普适性,并具有较高的回收率,应用前景广泛。