Two new heteroleptic ruthenium(II) dithiocarbamates: synthesis,characterization, DFT calculation and DNA binding

Two ruthenium(II) dithiocarbamates, cis-[Ru(DMP)₂L](BF₄), where L = 4-(4-methoxy-phenyl)piperazine-1-carbodithioate (1) and 4-(3-methoxyphenyl)piperazine-1-carbodithioate (2) and DMP = 2,9-dimethyl-1,10-phenanthroline, have been synthesized and characterized. The DNA-binding affinity of these metal complexes was investigated by UV–visible spectrophotometry with DNA-binding constants of 6.2 × 10⁴ M^?1 (1) and 1.2 × 10⁵ M^?1 (2) and electrostatic binding mode was confirmed by viscometric measurements. For insight into the structural differences, both complexes were studied computationally. B3LYP/LANL2DZ level of Density Functional Theory was used for the computational studies in Gaussian 09. The optimized bond lengths are in agreement with the reported values. Comparative computational studies reveal interesting transformations in bond lengths, angles, Natural Bond Orbital charges, molecular orbitals, Molecular Electro Static Potentials, and global chemical reactivity indices. Based on quantum chemical results a structure–activity relationship has been attempted.     

Nickel(II) complex with an asymmetric tetradentate Schiff base ligand: synthesis,characterization, crystal structure,and DFT studies

Abstract

A new asymmetric tetradentate Schiff base, bis(5-methoxysalicylidene)-4-methylbenzene-1,2-diamine), H₂L, and its Ni(II) complex were prepared and characterized using elemental analyses (CHN), FTIR, UV–Vis, ¹H NMR, and ¹³C{¹H} NMR spectroscopic techniques, and crystal structures of both were determined by X-ray crystallography. For both ligand and Ni(II) complex, density functional theory calculations to find geometry parameters, IR frequencies, electronic properties, and natural bond orbital analysis (NBO) were done with M062X method and Def2-TZVP basis set. All calculated data are consistent with the experiments. NBO data for the Ni(II) complex show that the main type of transition in UV-Vis is interligand charge-transfer, which is assigned as π-π*.     

Adsorption voltammetry of the copper(II) 2-(5-bromo-2-pyridylazo)-5-diethylaminophenol complex

The voltammetric determination of copper(II), based on adsorptive accumulation of the Cu(II)-2-(5-bromo-2-pyridylazo)-5-diethylaminophenol (S-Br-PADAP) complex on a hanging mercury drop electrode, is reported. The complex can be accumulated at the electrode at constant potential in 0.1M ammonium nitrate/ammonia buffer solution, and its reduction wave observed by scanning the potential in the negative direction, in the differential pulse mode. The calibration graph for copper is linear over the range 0.05-0.5muM, with accumulation for 5 min at -0.20 V. The adsorption of the complex is discussed and compared with that of copper complexes with several other pyridylazo derivatives.     

Synthesis,spectroscopic characterization,X-ray structure and DFT calculations of copper(II) complex with 2-(2-pyridyl)benzimidazole

The reaction of copper(II) nitrate trihydrate and 2-(2-pyridyl)benzimidazole (pybzim) leads to [Cu(pybzim)₂(NO₃)](NO₃). The compound has been studied by IR, UV–Vis spectroscopy and X-ray crystallography. The electronic structure of the [Cu(pybzim)₂(NO₃)]⁺ cation has been calculated with the density functional theory (DFT) method. The spin-allowed doublet–doublet electronic transitions of [Cu(pybzim)₂(NO₃)]⁺ have been calculated with the time-dependent DFT method, and the UV–Vis spectrum of the title compound has been discussed on this basis.     

Preparation and characterization of a new SNO ligand derived from ethanebis(thioamide) and 2-hydroxybenzaldehyde, and its Cu(II), Co(II), and Rh(III) metal complexes

A new Schiff base N-[(E)-(2-hydroxyphenyl)methylidene]-N’-[(Z)-(2-hydroxyphenyl)methylidene]ethanebis(thioamide) (L_C) containing sulfur, nitrogen, and oxygen atoms has been synthesized by condensation of ethanebis(thioamide) with 2-hydroxybenzaldehyde. Metal complexes were synthesized by reaction of the new ligand with copper(II) and cobalt(II) as nitrate salts and with rhodium(III) as chloride salt, using hot absolute ethanol as solvent. All the new compounds were characterized by use of different physicochemical techniques including UV–visible spectroscopy, magnetic susceptibility, IR spectroscopy, molar conductance, and determination of metal content. It is proposed the paramagnetic copper and cobalt complexes adopt octahedral geometry whereas the diamagnetic rhodium complex has octahedral geometry.     

A trinuclear nickel(II) enediolate complex: synthesis, characterization, and O2 reactivity

Using a new N(4)-donor chelate ligand having a mixture of hydrophobic phenyl and hydrogen-bond-donor appendages, a trinuclear nickel(II) complex of the doubly deprotonated form of 2-hydroxy-1,3-diphenylpropane-1,3-dione was isolated, characterized (X-ray crystallography, elemental analysis, UV-vis, (1)H NMR, FTIR, and magnetic moment measurement), and evaluated for O(2) reactivity. This complex, [(6-NA-6-Ph(2)TPANi)(2)(mu-PhC(O)C(O)C(O)Ph)(2)Ni](ClO(4))(2) (4), has two terminal pseudooctahedral Ni(II) centers supported by the tetradentate chelate ligand and a central square-planar Ni(II) ion ligated by oxygen atoms of two bridging enediolate ligands. In CH(3)CN, 4 exhibits a deep orange/brown color and lambda(max) = 463 nm (epsilon = 16 000 M(-1)cm(-1)). The room temperature magnetic moment of 4, determined by Evans method, is mu(eff) = 5.3(2) mu(B). This is consistent with the presence of two noninteracting high-spin Ni(II) centers, a diamagnetic central Ni(II) ion, and an overall quintet ground state. Exposure of a CH(3)CN solution of 4 to O(2) results in the rapid loss of the orange/brown color to give a green solution. The products identified from this reaction are [(kappa(3)-6-NA-6-Ph(2)TPA)Ni(O(2)Ph)(H(2)O)]ClO(4) (5), benzil [PhC(O)C(O)Ph], and CO. Identification of 5 was achieved via its independent synthesis and a comparison of its (1)H NMR and mass spectral features with those of the 6-NA-6-Ph(2)TPA-containing product generated upon reaction of 4 with O(2). The independently prepared sample of 5 was characterized by X-ray crystallography, elemental analysis, UV-vis, mass spectrometry, and FTIR. The O(2) reactivity of 4 has relevance to the active-site chemistry of Ni(II)-containing acireductone dioxygenase (Ni(II)ARD).     

Rhenium(II) nitrosyl complexes: synthesis,characterization, DFT calculations and DNA nuclease activity

The rhenium(II) dinitrosyl and mononitrosyl complexes, i.e. [Re(NO)₂(CN)₄]·(Phen)₂·2H₂O (1) and PhenH[Re(NO)(CN)₄(H₂O)]·(Phen)·3H₂O (2) have been isolated and characterized. The X-ray crystal structure of 2 reveals that Re(II) is octahedrally coordinated with one nitrosyl, four cyanides, and one water, with one phenanthroline protonated to compensate the charge of the Re(II) center. The crystal structure shows chemically significant non-covalent interactions like hydrogen bonding involving the uncoordinated water and π–π interactions between phenanthrolinium and phen. The structures of both complexes have been optimized by DFT. Absorption and emission spectral studies and viscosity measurements indicate that both 1 and 2 interact with calf thymus DNA through partial intercalation of DNA bases. The intrinsic-binding constants, obtained from UV–vis spectroscopic studies, are 1.2?×?10⁴ and 7.2?×?10⁴?M^?1 for 1 and 2, respectively. Both 1 and 2 are capable of inducing cleavage of plasmid DNA in the presence of H₂O₂ to form the supercoiled form to nicked circular form. The spectroscopic results of DNA binding are supported by molecular docking studies.     

Tris(5-methylpyrazolyl)methane: synthesis and properties of its iron(II) complex

The new ligand, tris(5-methylpyrazolyl)methane (1), has been prepared by the reaction of n-butyl lithium with tris(pyrazolyl)methane followed by trimethylation of the tetralithiated species with methyl iodide. The BF(4)(-), ClO(4)(-), and BPh(3)CN(-) salts of the Fe(II) complex of this ligand were also synthesized. The X-ray crystal structure of the BF(4)(-) complex (2) at 100 K had Fe-N bond lengths of 1.976 ?, indicative of a low spin Fe(II) complex, while at room temperature, the structure of this complex had a Fe-N bond distance close to 2.07 ?, indicative of an admixture of approximately 50% low-spin and 50% high-spin. The solid-state structure of the complex with a ClO(4)(-) counterion was determined at 5 different temperatures between 173 and 293 K, which allowed the thermodynamic parameters for the spin-crossover to be estimated. M?ssbauer spectra of the BF(4)(-) complex further support spin-state crossover in the solid state with a transition temperature near 300 K. UV-visible spectroscopy and (1)H NMR studies of 2 show that the transition temperature in solution is closer to 400 K. No spin-crossover was observed for [Fe(1)(2)](2+)·2BPh(3)CN(-). The results allow the separation of effects of groups in the 3-position from those in the 5-position on tpm ligands, and also point toward a small cooperative effect in the spin-crossover for the Fe(II) complex.     

Synthesis,structure, EPR,and DFT calculation on dinuclear paddle wheel Cu(II) complexes with bis-chelate rings

A series of diester-dicarboxylic acids, L¹H₂, L²H₂, L³H₂, L⁴H₂, and L⁵H₂ and their dinuclear Cu₂ complexes [Cu(L¹)CH₃CN]₂ (1), [Cu(L²)H₂O]₂ (2), [Cu(L³)CH₃CN]₂ (3), [Cu(L⁴)EtOH]₂ (4), and [Cu(L⁵)CH₃CN]₂ (5), were synthesized. The crystal structures obtained for 1, 2, and 4 and the density functional theory optimized structures for 2, 3, and 5 illustrated the formation of tetracarboxylate “paddle wheel” complexes. The phthalyl and diphenyl head groups and the spacer moieties were appropriately altered and the size of the chelate ring expanded from 15-membered in 1 to 21-membered in 5. The dinuclear units have strong Cu–Cu interaction with EPR spectra exploring spin coupled features.     

Hydrothermal synthesis of a 2-(2-pyridyl)imidazole derivative and its copper(II) and zinc(II) complexes

The hydrothermal synthesis of a heterocyclic quaternary nitrogen compound, namely, 6,7-dihydro-pyrido[2′,1′:3,4]pyrazino[1,2-a]imidazol-5-ium-bromide monohydrate (LBr · H₂O) is reported. Various spectroscopic analyses were performed on the cationic heterocycle. Cu^II and Zn^II halide complexes of this novel ligand were prepared. The heterocycle and its complexes were characterized by single crystal X-ray diffraction analysis. Both complexes contain neutral [M^IILX₃] molecules, where the cyclic ligand (L⁺) is coordinated to the metal as a monodentate ligand. The Cu²⁺ complex has a distorted tetrahedral geometry, indicating an obvious steric effect from L⁺ on the chloride co-ligand. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

A trinucleating ligand based on 1,8-naphthalenediol: synthesis, structural and magnetic properties of a linear Cu(II)Cu(II)Cu(II) complex

The extension of Robson-type ligands from dinucleating based on 2,6-diformylphenol to trinucleating based on 2,7-diformyl-1,8-naphthalenediol is demonstrated by the synthesis, structural and magnetic characterization of the first trinuclear Cu(II) complex using a 1,8-naphthalenediol derived ligand.     

Synthesis and characterization of tris(2-pyridylthio)methanido Zn complex with a Zn-C bond and DFT calculation of its one-electron oxidized species

Tris(2-pyridylthio)methane (tptmH) reacts with ZnCl(2) producing the Zn-C containing complex of [ZnCl(tptm)], whose cyclic voltammogram shows an irreversible oxidation peak at 0.2 V vs. E(0')(Fc(+/0)). DFT calculations suggested that 1e(-) oxidation should occur at the tptm ligand resulting in the cleavage of the Zn-C bond, leading to decomposition of the complex.     

2-line ferrihydrite: synthesis, characterization and its adsorption behaviour for removal of Pb(II), Cd(II), Cu(II) and Zn(II) from aqueous solutions

Nano-structured 2-line ferrihydrite was synthesized by a pH-controlled precipitation technique at 90 °C. Chemical, X-ray diffraction (XRD), Fourier transform infrared (FTIR) and Raman analyses confirmed the sample to be 2-line ferrihydrite. The nano nature of the prepared sample was studied by transmission electron microscopy (TEM). The surface area obtained by the Brunauer-Emmett-Teller (BET) method was 175.8 m(2) g(-1). The nanopowder so obtained was used to study its behaviour for the removal of Pb(II), Cd(II), Cu(II) and Zn(II) from aqueous solutions. The relative importance of experimental parameters such as solution pH, contact time and concentration of adsorbate on the uptake of various cations was evaluated. By increasing the pH from 2.0 to 5.5, adsorption of the four cations increased. The kinetics parameters were compared by fitting the contact time data to both linear as well as non-linear forms of pseudo-second-order models. Linear forms of both Langmuir and Freundlich models fitted the equilibrium data of all the cations except for Pb(II) which was also fitted to the non-linear forms of both the models as it gave a low R(2) value of 0.85 for the Langmuir model. High Langmuir monolayer capacities of 366, 250, 62.5 and 500 mg g(-1) were obtained for Pb(II), Cd(II), Cu(II) and Zn(II), respectively. Presence of chloride or sulfate had an adverse effect on cation adsorption. The interactive effects on adsorption from solutions containing two, three or four cations were studied. Surprisingly no Cd(II) adsorption was observed in Pb(II)-Cd(II), Pb(II)-Cd(II)-Zn(II) and Pb(II)-Cd(II)-Cu(II)-Zn(II) systems under the studied concentration range. The overall loading capacity of the adsorbent decreased in mixed cation systems. Metal ion loaded adsorbents were characterized by XRD, FTIR and Raman techniques. The high adsorption capability of the 2-lines ferrihydrite makes it a potentially attractive adsorbent for the removal of cations from aqueous solutions.     

Interaction of iron(II) and the simultaneous spectrophotometric determination of Fe, Cu, Zn, Co and Ni with 2-(5-bromo-2-pyridylazo)-5-diethylaminophenol

Summary The reaction of Fe(II) with 2-(5-bromo-2-pyridylazo)-5-diethylaminophenol (Br-PADAP) is studied in detail and procedures for the sensitive determination of Fe(II) at pH 4.7 (acetate buffer), pH 9.0 (borate buffer) and in the presence of EDTA are optimized. A simultaneous determination of Fe, Cu, Zn, Co and Ni in aqueous medium and of Fe, Cu and Zn in blood serum with Br-PADAP at pH 9.0 using multivariate calibration with PLS evaluation of absorbance data also give satisfactory results.     

Binuclear terephthalato-bridged copper(II) complex with N2O2 coordinating tripodal ligand: synthesis,structure, magnetic properties,and DFT study

The bluish green binuclear dicarboxylato bridged copper(II) complex [Cu₂(HL)₂(µ-tp)], 1 has been synthesized, where (HL^?) is the monodeprotonated form of N,N-bis(2-hydroxybenzyl)-N′,N′-dimethylethylenediamine and tp = terephthalate dianion. Herein, we report the synthesis, spectral and structural characterization, and magnetic behavior of 1. The coordination geometry of Cu(II) has a distorted square pyramidal geometry (τ = 0.117). The variable temperature magnetic moment reveals that the complex exhibits very weak antiferromagnetic interaction (J _Exp = ?0.30 cm^?1) and the calculated J value (J _Calcd = ?1.05 cm^?1) using broken symmetry DFT method is in agreement with the experimentally observed value.     

Zinc(II) di(o-hydroxybenzoate) complexes with imidazole and its derivativesSynthesis,thermal characterization and molecular structures

Mixed complexes of the type: Zn(Hsal)₂(Him)₂, Zn(Hsal)₂(Him)₅, Zn(Hsal)₂(4-MeHim)₂ and Zn(Hsal)₂(1,2-diMeim)₂ (where Hsal=OHC₆H₄COO^-, Him=imidazole, 4-MeHim=4-methylimidazole, 1,2-diMeim=1,2-dimethylimidazole) have been synthesized. The application of chemical, thermal and X-ray methods has enabled us to analyze the complexes and their sinters. The gaseous products of pyrolysis of Zn(Hsal)₂(Him)₂ and Zn(Hsal)₂(4-MeHim)₂ have been investigated. Thermal decomposition pathways have been postulated for synthesized complexes. The molecular structures of the Zn(Hsal)₂(Him)₂ and Zn(Hsal)₂(1,2-diMeim)₂ have been solved.     

New tetranuclear Cu(II) complexes: synthesis, structure, and magnetic properties

The synthesis, structure, and magnetic properties of two new tetranuclear Cu(II) complexes containing N,N,N',N'-tetraethylpyridine-2,6-dithiocarboxamide (S-dept) of formula [Cu(2)Cl(2)(mu-S-dept)(2)][Cu(2)Cl(4)(mu-Cl)(2)] (1) and [Cu(2)(mu-Cl)(2)(S-dept)(2)][CuCl(3)(EtOH)](2) (2) are reported. Their X-ray crystal structures reveal that the complexes are composed of anionic and cationic dimers, that in both cases contain the metal centers which interact via Coulombic and/or hydrogen bonding interactions. In both cases, the Cu centers in the anionic moieties adopt a slightly distorted tetrahedral geometry whereas for the cationic moieties they adopt a square-pyramidal type of geometry. Magnetic susceptibility data show that compounds 1 and 2 present an overall antiferromagnetic behavior arising from the contribution of both anionic and cationic moieties. For 1, the best fit obtained gave J(1) = -2.62 +/- 0.19 cm(-1), J(2) = -19.54 +/- 0.47 cm(-1), and g(2) = 2.164 +/- 0.004 cm(-1) (R = 8.28 x 10(-5)) whereas for 2 it gave J(1) = 4.48 +/- 2.73 cm(-1), g(1) = 2.20 +/- 0.03, J(2) = -11.26 +/- 2.01 cm(-1), and g(2) = 2.10 +/- 0.03 (R = 1.15 x 10(-4)). The nature of the superexchange pathways in 1 and 2 is discussed on the basis of structural, magnetic, and molecular orbital considerations. Theoretical calculations are performed at the extended Huckel level in order to obtain their molecular orbitals and energies using their crystallographic data.