Theoretical study of the structures and vibrational spectra of the hydrogen-bonded systems of 4-cyanophenol with N-bases

The structural and vibrational features of the hydrogen bonded complexes of 1,5,7-triazabicyclo [4.4.0] dec-5-ene (TBD) with one and two 4-CNPhOH molecules have been studied extensively by ab initio SCF/6-31G(d,p) and BLYP calculations with various basis sets: 6-31G(d,p), 6-31+G(d,p) and 6-31++G(d,p). Full geometry optimization was made for the complexes studied. The nature of the hydrogen bonding and the influence of the hydrogen bonding on the structural and vibrational characteristics of the monomers have been investigated. The corrected values of the dissociation energy for the hydrogen-bonded complexes have been calculated in order to estimate their stability. The calculated values of the dissociation energy per phenol molecule indicate that the complex: TBD: 4-CNPhOH (1:1) is more stable than the complex: TBD: 4-CNPhOH (1:2). The changes in the structural and vibrational characteristics upon hydrogen bonding depend on the strength of the hydrogen bonds. In agreement with the experiment, the calculations show that the complexation between TBD and 4-CNPhOH leads to considerably changes in the vibrational characteristics of the stretching O-H vibration. The vibrational frequency of the O-H stretching vibration is shifted to lower wave numbers upon hydrogen bonding. The predicted frequency shifts Deltanu(O-H) for the complexes--TBD: 4-CNPhOH (1:1) and TBD: 4-CNPhOH (1:2) are in the range from -190 cm(-1) to -586 cm(-1). In the same time the IR intensity of the O-H stretching vibration increases dramatically in the hydrogen-bonded complexes.     

Ab initio study of the vibrational spectra of the hydrogen-bonded nitric acid dimer.

The changes in the vibrational characteristics characterizing the dimerization of nitric acid have been investigated by ab initio calculations at the MP2 level, with 6-31G(d,p) and 6-31 + G(d,p) basis sets, and B3LYP/6-31G(d,p) calculations. The most consistent agreement between the computed values of the frequency shifts for the planar fully symmetric structure (2A) and those experimentally observed suggests that this structure is preferred. It was established that the most sensitive to the complexation is the stretching O-H vibration. The values of the frequency shift (-306 cm(-1)) is indicative for the formation of the relatively strong hydrogen bonds. The calculations predict an increase of the infrared intensity of the stretching O-H vibration in the nitric acid dimer more than 26 times.     

Matrix isolation infrared and ab initio study of the hydrogen bonding between formic acid and water

The infrared spectra of the formic acid-water complexes isolated in argon matrices are reported. Both supersonic jet expansion and a conventional effusive source followed by trapping in solid argon at 10K are used to obtain the matrices. The experimental IR spectra are compared to the data obtained from high level ab initio (MP2) and DFT (B3LYP) calculations with 6-311++G(d,p) and aug-cc-pVTZ basis sets. The complex formation results in red shifts in the C=O and O-H stretching vibrations and a blue shift in the C-O stretching vibration of formic acid. The O-H stretching modes of water also exhibit pronounced red shifts. Both the MP2 and B3LYP calculations located three minima corresponding to cyclic HCOOH...H2O complexes with two hydrogen bond interactions. The binding energies are -10.3, -5.1, and -3.5 kcal mol(-1), respectively, for the three complexes at the MP2/ aug-cc-pVTZ level, corrected for the basis set superposition error (BSSE) using the Boys-Bernardi counterpoise scheme. Comparison of the calculated frequencies of the three complexes with the matrix IR spectrum reveals that the lowest energy complex is formed. In addition, a complex of formic acid with two water molecules is observed.     

Ab initio and DFT studies of the vibrational spectra of hydrogen-bonded PhOH...(H2O)4 complexes

The vibrational characteristics (vibrational frequencies and infrared intensities) for the hydrogen-bonded complex of phenol with four water molecules PhOH...(H2O)4 (structure 4A) have been predicted using ab initio and DFT (B3LYP) calculations with 6-31G(d,p) basis set. The changes in the vibrational characteristics from free monomers to a complex have been calculated. The ab initio and B3LYP calculations show that the observed four intense bands at 3299, 3341, 3386 and 3430 cm(-1) can be assigned to the hydrogen-bonded OH stretching vibrations in the complex PhOH...(H2O)4 (4A). The complexation leads to very large red shifts of these vibrations and very strong increase in their IR intensity. The predicted red shifts for these vibrations with B3LYP/6-31G(d,p) calculations are in very good agreement with the experimentally observed. It was established that the phenolic OH stretching vibration is the most sensitive to the hydrogen bonding. The predicted red-shift with the B3LYP/6-31G(d,p) calculations for the most stable ring structure 4A (-590 cm(-1)) is in better agreement with the experimentally observed than the red-shift, predicted with SCF/6-31G(d,p) calculations. The magnitude of the wavenumber shift is indicative of relatively strong OH...H hydrogen-bonded interaction. The complexation between phenol and four water molecules leads to strong increase of the IR intensity of the phenolic OH stretching vibration (up to 38 times).     

Theoretical study of the changes in the vibrational characteristics arising from the hydrogen bonding between Vitamin C (L-ascorbic acid) and H2O

The vibrational characteristics (vibrational frequencies, infrared intensities and Raman activities) for the hydrogen-bonded system of Vitamin C (L-ascorbic acid) with five water molecules have been predicted using ab initio SCF/6-31G(d,p) calculations and DFT (BLYP) calculations with 6-31G(d,p) and 6-31++G(d,p) basis sets. The changes in the vibrational characteristics from free monomers to a complex have been calculated. The ab initio and BLYP calculations show that the complexation between Vitamin C and five water molecules leads to large red shifts of the stretching vibrations for the monomer bonds involved in the hydrogen bonding and very strong increase in their IR intensity. The predicted frequency shifts for the stretching vibrations from Vitamin C taking part in the hydrogen bonding are up to -508 cm(-1). The magnitude of the wavenumber shifts is indicative of relatively strong OH...H hydrogen-bonded interactions. In the same time the IR intensity and Raman activity of these vibrations increase upon complexation. The IR intensity increases dramatically (up to 12 times) and Raman activity increases up to three times. The ab initio and BLYP calculations show, that the symmetric OH vibrations of water molecules are more sensitive to the complexation. The hydrogen bonding leads to very large red shifts of these vibrations and very strong increase in their IR intensity. The asymmetric OH stretching vibrations of water, free from hydrogen bonding are less sensitive to the complexation than the hydrogen-bonded symmetric OH stretching vibrations. The increases of the IR intensities for these vibrations are lower and red shifts are negligible.     

聚醚氨酯红外N—H伸缩振动谱带分析

通过快速淬火实验,直接观察到聚醚氨酯中由硬段N—H基与软段—O—形成氢键的N—H伸缩振动谱带位于约3295cm~(-1),低于与硬段本身C=O形成氢键的N—H伸缩振动谱带(约3330cm~(-1))。这两种氢键键连的N—H伸缩振动谱带的位置从聚醚氨酯-四氢呋喃溶液的红外光谱得到证实。在此基础上讨论了三种聚醚氨酯试样的红外光谱中N—H伸缩振动谱带的差异。     

Infrared spectra of the (H2O)n-SO2 complexes in argon matrices

The infrared spectra of the (H(2)O)n-SO(2) complexes trapped in argon matrices have been investigated using Fourier transform infrared spectroscopy. In addition to the 1:1 and 2:1 complexes, the first spectroscopic evidence for the 3:1 complex has been obtained from the spectra of the SO stretching and the OH stretching modes. The observed frequency shifts in the bonded OH stretching region indicate that the hydrogen bonds of the 2:1 and 3:1 complexes are strengthened compared to that of the 1:1 complex, which suggests the cyclic structure of the complexes.     

Ab initio prediction of the vibrational spectra of the hydrogen‐bonded complexes between CO and HONO2

The vibrational characteristics (vibrational frequencies and infrared intensities) for free and complexed CO and HONO₂ have been predicted using ab initio calculations at SCF and MP2 levels with different basis sets and B3LYP/6?31G(d,p) calculations. The ab initio calculations show that the complexation between HONO₂ and CO leads to two stable structures: CO … HONO₂ (1A) and OC … HONO₂ (1B). The changes in the vibrational characteristics from free monomers to complexes have been estimated. It was established that the most sensitive to the complexation is the stretching O? H vibration. In agreement with the experiment, its vibrational frequency in the complexes is shifted to lower frequency (Δν = ?123 cm^?1). The magnitude of the wave number shift is indicative of relatively strong hydrogen‐bonded interaction. The ab initio calculations at different levels predict an increase of the infrared intensity of the stretching O? H vibration for structure 1A more than five times and for structure 1B more than nine times. The most consistent agreement between the computed values of the frequency shifts for structure 1B and those experimentally observed suggests that this structure is preferred. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2003     

UVRR spectroscopic studies of valinomycin complex formation in different solvents

We investigated the complexation of valinomycin (VM) in different solvent environments with the aid of the UVRR spectroscopy. By probing the 206.5 and 229 nm excited Raman spectra, we showed that new bands are observed around 1700 and 1290 cm(-1). We assigned the 1700 cm(-1) band to the hydrogen bonded ester carbonyl stretching vibration. In a polar solvent, VM-K(+) complexation shows significant intensity changes in amide and ester carbonyl stretching region. Because of the small amount of conformational interconversion, complexation has a negligible effect on other band intensities including, the amide III, C(alpha)H, and amide II. We also showed the effects of the solvent polarity on the solution conformation of VM.     

Infrared and infrared emission spectroscopic study of selected magnesium carbonate minerals containing ferric iron--implications for the geosequestration of greenhouse gases

The proposal to remove greenhouse gases by pumping liquid carbon dioxide several kilometres below ground level implies that many carbonate containing minerals will be formed. Among these minerals, the formation of two hydrotalcite-like minerals coalingite and brugnatellite is possible, thus necessitating a study of such minerals and their thermal stability. The two such carbonate-bearing minerals brugnatellite and coalingite have been characterised by a combination of infrared and infrared emission spectroscopy. Infrared emission spectroscopy is most useful to determine the stability of these minerals. The infrared spectra of the OH stretching region are characterised by OH and water stretching vibrations. Intense (CO3)(2-) symmetric and antisymmetric stretching vibrations support the concept that the carbonate ion is distorted in these minerals. The position of the water bending vibration indicates that the water is strongly hydrogen bonded in the mineral structure. IES spectra show the temperature range of the thermal stability of these minerals.     

Intermolecular interactions between halothane and dimethyl ether: a cryosolution infrared and Ab initio study.

The complex of halothane (CHClBrCF(3)) and dimethyl ether has been investigated experimentally in solutions of liquid krypton using infrared spectroscopy and theoretically using ab initio calculations at the MP2/6-311++G(d,p) level. The formation of a 1:1 complex was experimentally detected. The most stable ab initio geometry found is the one in which the C--H bond of halothane interacts with the oxygen atom of dimethyl ether. The complexes in which the chlorine or the bromine atom of halothane interacts with the oxygen atom of the ether were found to be local energy minima and were less stable by 14.5 and 9.3 kJ mol(-1), respectively, than the global minimum. The formation of a single complex species was observed in the infrared spectra; the standard complexation enthalpy of this complex was determined to be -12.3(8) kJ mol(-1). Analysis of the observed complexation shifts supports the identification of the complex as the hydrogen-bonded species. The C--H stretching vibration of halothane was found to show a redshift upon complexation of 19(2) cm(-1). The infrared intensity ratios epsilon(complex)/epsilon(monomer) for the fundamental and its first overtone were measured to be 6.5(1) and 0.31(1). The frequency shift was analyzed using Morokuma-type analysis, and the infrared intensity ratios were rationalized using a model including the mechanical and electric anharmonicity of the C--H stretching fundamental.     

Infrared spectra of the water-nitrogen complexes (H2O)2-(N2)n(n = 1-4) in argon matrices

The infrared spectra of the water-nitrogen complexes trapped in argon matrices have been studied with Fourier transform infrared absorption spectroscopy. The absorption lines of the H20-N2 1:1, 1:2, 1:n, and 2:1 complexes have been confirmed on the basis of the concentration effects. In addition, we have observed a few lines and propose the assignments for the 2:2, 2:3, and 2:4 complexes in the nu1 symmetric stretching and nu2 bending regions of the proton-acceptor molecule, and in the bonded OH stretching region of the proton-donor molecule. The redshifts in the bonded OH stretching mode and blueshifts in the OH bending mode suggest that the hydrogen bonds in the (H2O)2-(N2)n complexes with n = 1-4 are strengthened by the cooperative effects compared to the pure H2O dimer. Two absorption bands due to the 3:n complexes are also observed near the bonded OH stretching region of the H2O trimer.     

Theoretical study of the structures, stability and vibrational spectra of the nitrous acid complexes with CH4

The structures, stability and vibrational spectra of the binary complexes CH4...HONO-trans and CH4...HONO-cis have been investigated using ab initio calculations at the SCF and MP2 levels with 6-311++G(d,p) basis set and B3LYP calculations with 6-31G(d,p) and 6-31+G(d,p) basis sets. Full geometry optimization was made for the complexes studied. It was established that the complex CH4...HONO-trans is more stable by 0.41 kcal mol(-1) than the complex CH4...HONO-cis. The accuracy of the ab initio calculations have been estimated by comparison between the predicted values of the vibrational characteristics (vibrational frequencies and infrared intensities) and the available experimental data. It was established, that the methods, used in this study are well adapted to the problem under examination. The predicted values with the B3LYP calculations are very near to the results, obtained with 6-311++G(d,p)/MP2. The changes in the vibrational characteristics of methane and trans-, cis-nitrous acid upon formation of the hydrogen bond show that the complexes CH4...HONO-trans and CH4...HONO-cis have geometry in which the OH group interacts with a methane molecule forming a single hydrogen bond. This fact is confirmed by relatively strong perturbation of the OH stretching vibration to lower frequencies and an increase of the infrared intensity of this vibration up to three times upon hydrogen bonding.     

Hydrogen bond formations between pyrazine and formic acid and between pyrazine and trichloroacetic acid

The hydrogen bond formations between pyrazine and formic acids and between pyrazine and trichloroacetic acids were studied through observation of the Raman and infrared spectra for mixture of pyrazine and formic acid and also mixture of pyrazine and trichloroacetic acid at 77 K. It was observed that the mutual exclusion principle held for the Raman and infrared spectra of both mixtures, even for the spectra of the samples whose mixing mole ratio of acids was very low. This fact clearly indicates that the hydrogen bonded molecule does not exist in the form of formic acid-pyrazine or trichloroacetic acid-pyrazine whose geometry belongs to the Cs point group, but exists in the form of formic acid-pyrazine-formic acid or trichloroacetic acid-pyrazine-trichloroacetic acid belonging to the C(i) point group.     

Computational study of hydrogen-bonded complexes of HOCO with acids: HOCO⋯HCOOH, HOCO⋯H(2)SO(4), and HOCO⋯H(2)CO(3)

Quantum chemistry calculations at the density functional theory (DFT) (B3LYP), MP2, QCISD, QCISD(T), and CCSD(T) levels in conjunction with 6-311++G(2d,2p) and 6-311++G(2df,2p) basis sets have been performed to explore the binding energies of open-shell hydrogen bonded complexes formed between the HOCO radical (both cis-HOCO and trans-HOCO) and trans-HCOOH (formic acid), H(2)SO(4) (sulfuric acid), and cis-cis-H(2)CO(3) (carbonic acid). Calculations at the CCSD(T)∕6-311++G(2df,2p) level predict that these open-shell complexes have relatively large binding energies ranging between 9.4 to 13.5 kcal∕mol and that cis-HOCO (cH) binds more strongly compared to trans-HOCO in these complexes. The zero-point-energy-corrected binding strengths of the cH?Acid complexes are comparable to that of the formic acid homodimer complex (～13-14 kcal∕mol). Infrared fundamental frequencies and intensities of the complexes are computed within the harmonic approximation. Infrared spectroscopy is suggested as a potential useful tool for detection of these HOCO?Acid complexes in the laboratory as well as in various planetary atmospheres since complex formation is found to induce large frequency shifts and intensity enhancement of the H-bonded OH stretching fundamental relative to that of the corresponding parent monomers. Finally, the ability of an acid molecule such as formic acid to catalyze the inter-conversion between the cis- and trans-HOCO isomers in the gas phase is also discussed.     

Structure, stability and vibrational spectrum of the hydrogen-bonded complex between HNO3 and H2O. Ab initio and DFT studies

The structure, stability and vibrational spectrum of the binary complex between HONO2 and H2O have been investigated using ab initio calculations at SCF and MP2 levels with different basis sets and B3LYP/6-31G(d,p) calculations. Full geometry optimization was made for the complex studied. It was established that the hydrogen-bonded H2O...HONO2 complex has a planar structure. The corrected values of the dissociation energy at the SCF and MP2 levels and B3LYP calculations are indicative of relatively strong OH...O hydrogen-bonded interaction. The changes in the vibrational characteristics (vibrational frequencies and infrared intensities) arising from the hydrogen bonding between HONO2 and H2O have been estimated by using the ab initio calculations at SCF and MP2 levels and B3LYP/6-31G(d,p) calculations. It was established that the most sensitive to the complexation is the stretching O-H vibration from HONO2. In agreement with the experiment, its vibrational frequency in the complex is shifted to lower wavenumbers. The predicted frequency shift with the B3LYP/6-31G(d,p) calculations (-439 cm(-1)) is in the best agreement with the experimentally measured (-498 cm(-1)). The intensity of this vibration increases dramatically upon hydrogen bonding. The ab initio calculations at the SCF level predict an increase up to five times; at the MP2 level up to 10 times and the B3LYP/6-31G(d,p) predicted increase is up to 17 times. The good agreement between the predicted values of the frequency shifts and those experimentally observed show that the structure of the hydrogen-bonded complex H2O...HONO2 is reliable.     

Raman jet spectroscopy of formic acid dimers: low frequency vibrational dynamics and beyond

The vibrational dynamics of formic acid dimer is quite regular at low fundamental excitation frequencies, whereas it evolves into a complex and irregular vibrational signature in the OH stretching region. This is evidenced by the first Raman investigation of the jet-cooled formic acid dimer and its three deuterated isotopomers. Subtle isotope effects in the inter-monomer stretching mode, which is directly observed for the first time at 194 cm(-1), find an interpretation based on hydrogen bond weakening due to quantum delocalization of the protons. The reported high-frequency jet spectra should provide essential experimental stepping stones towards a more complete understanding of this planar prototype for strong double hydrogen bonding.     

Laser Raman and infrared spectral studies of dl-phenylalaninium nitrate

The vibrational band assignments of dl-phenylalaninium nitrate in the crystalline state are made by recording the infrared and Raman spectra at room temperature. The presence of carbonyl (C=O) group has been identified. The prominent marker bands of the aromatic amino acid phenylalanine have been observed and the various modes of vibration have been assigned. The extensive intermolecular hydrogen bonding in the crystal has been identified by the shifting of bands due to the stretching and bending modes of the various functional groups. The nitrate group forms the anion. The stretching and bending wave numbers of the NO(3)(-) anion are different from those observed for free ion state and the degenerating mode of vibrations is also lifted. These reveal that the crystalline field has influenced the symmetry of the nitrate ion.     

Solute-solvent interactions in cryosolutions: a study of halothane-ammonia complexes

The formation of C-H···N bonded complexes of halothane with ammonia has been studied using infrared and Raman spectroscopy of solutions in the liquid rare gases argon, krypton and xenon, of supersonic jet expansions and of room temperature vapor phase mixtures. For the solutions and for the vapor phase experiments, the formation of complexes with 1:1 and 1:2 stoichiometry was observed. The complexation enthalpy for the 1:1 complex was determined to be -20 (1) kJ mol(-1) in the vapor phase, -17.0 (5) kJ mol(-1) in liquid xenon and -17.3 (6) kJ mol(-1) in liquid krypton. For the 1:2 complex in liquid xenon, the complexation enthalpy was determined to be -31.5 (12) kJ mol(-1). Using the complexation enthalpies for the vapor phase and for the solutions in liquid xenon and krypton, a critical assessment is made of the Monte Carlo Free Energy Perturbation approach to model solvent influences on the thermodynamical properties of the cryosolutions. The influences of temperature and solvent on the complexation shifts of the halothane C-H stretching mode are discussed.     

Effect of water on the formamide-intercalation of kaolinite

The molecular structures of low defect kaolinite completely intercalated with formamide and formamide-water mixtures have been determined using a combination of X-ray diffraction, thermoanalytical techniques, DRIFT and Raman spectroscopy. Expansion of the kaolinite to 10.09 A was observed with subtle differences whether the kaolinite was expanded with formamide or formamide-water mixtures. Thermal analysis showed that greater amounts of formamide could be intercalated into the kaolinite in the presence of water. New infrared bands were observed for the formamide intercalated kaolinites at 3648, 3630 and 3606 cm(-1). These bands are attributed to the hydroxyl stretching frequencies of the inner surface hydroxyls hydrogen bonded to formamide with water, formamide and interlamellar water. Bands were observed at similar positions in the Raman spectrum. At liquid nitrogen temperature, the 3630 cm(-1) Raman band separated into two bands at 3633 and 3625 cm(-1). DRIFT spectra showed the hydroxyl deformation mode at 905 cm(-1). Changes in the molecular structure of the formamide are observed through both the NH stretching vibrations and the amide 1 and 2 bands. Upon intercalation of kaolinite with formamide, bands are observed at 3460, 3344, 3248 and 3167 cm(-1) attributed to the NH stretching vibration of the NH involved with hydrogen bonded to the oxygens of the kaolinite siloxane surface. In the DRIFT spectra of the formamide intercalated kaolinites bands are observed at 1700 and 1671 cm(-1) and are attributed to the amide 1 and amide 2 vibrations.