X-ray structures of two methoxybenzo[b]thiophenes

The crystal and molecular structures of two methoxybenzo[b]thiophenes have been determined by three-dimensional, single-crystal X-ray diffractometry. Both 3-(4-hydroxy-3, 5-dimethoxybenzoyl)-2-(4-methoxyphenyl)-6-methoxybenzo[b]thiophene and 3-(2,6-dimethoxybenzoyl)-2-(4-methoxyphenyl)-6-methoxybenzo[b]thiophene (hereafter referred to asI andII, respectively) crystallize in the monoclinic centrosymmetric space groupP2₁/n (No. 14, C _2h ⁵ ) with four formula units-per cell witha=6.866(1),b=28.638(2),c=11.830(2) Å, and =105.52(1)° anda=9.328(1),b=7.977(1),c=29.650(4) Å, and =97.87(1)°, respectively. The phase problems were solved by direct methods and the respective final full-matrix least-squares refinements converged toR=0.046 and 0.031. The structures differ in the positioning of the dimethoxy groups of the benzoyl ligands and the addition of a hydroxyl group inI. The molecules in the crystal lattice are held together by van der Waals forces plus the addition of hydrogen bonding in compoundI. Selected bond distances and angles and torsion angles are tabularized.     

Synthesis and structural characterization of 5,6,15,16-tetradehydrobenzo[a]phenanthro[9, 10-e]cyclooctene,C24H12

A benzo-phenanthro-fused planar cyclooctatetraene derivative, namely, 5,6,15,16-tetradehydrobenzo[a]phenanthro[9, 10-e]cyclooctene (5) was synthesized in two steps from the known benzo[a]phenanthro[9, 10-e]cyclooctene (6). Compound5 crystallizes in space groupPbam witha=9.828(2),b=19.466(4),c=15.901(3) Å, and Z=8. X-Ray analysis (MoK radiation,R=0.060 for 1233 observed data) has shown that both independent molecules have the same planarC _2v configuration with averaged bond lengths of 1.381(7) and 1.208(7) Å for the phenanthrene C_6a–C_14b bond and the acetylenic CC bond, respectively.¹H and¹³C NMR spectral results of 5 and 5,6,15,16-tetrabromo-5,6,15,16-tetrahydrobenzo[a]phenanthro[9, 10-e]cyclooctene (7) are also presented.     

Crystal structures of thecis andtrans isomers of dithiahexahydro[3.3]metacyclophane

Structures of both thecis andtrans isomers of dithiahexahydro[3.3]metacyclophane, ?C₆H₄?CH₂SCH₂?C₆H₁₀?CH₂SCH₂?, have been determined, wherecis andtrans refer to the attachments to the cyclohexane ring. Thecis form crystallizes in the monoclinic space groupP2₁/c witha=8.4299(11)Å,b=21.772(2)Å,c=8.9724(13)Å, β=116.574(11)^o, andZ=4. Thetrans isomer packs into the monoclinic space groupP2₁ witha=8.159(16)Å,b=10.185(5)Å,c=9.558(2)Å, β=112.435(18)^o, andZ=2. The cyclohexane ring of thecis isomer is in the chair conformation, while the cyclohexane of thetrans isomer is found in a twisted boat conformation.     

Crystal structure of 2,3-dihydronaphto[2,3-b) [1,5] dioxepin

The X-ray single crystal structure of C₁₃H₁₂O₂ compound was determined. It crystallizes in the orthorombic space group P2₁2₁2₁ with a = 7.8847(7), b = 9.639(1), c = 13.432(2) Å, Z = 4 and V = 1020.8(3) ų. The final R converged to 0.037 for 1763 independent reflexions. The title compound forms layers parallel to (1 0 0) planes and the three dimensional cohesion of the crystal is assumed by Van der Waals interactions. The molecule consists of two six-membered rings (A and B) and a seven-membered ring (C). A and B rings are planar, whereas the C ring has a chair conformation     

Crystal structures of the cis and trans isomers of a tetrathia[3.3.3.3]cyclophane

Both the cis and trans isomers of 3,11,18,26-tetrathiatricyclo[26.2.2.1^5,9.2^13,16.1^20,24] hexatriaconta-5,7,9,20,22,24-hexene have been prepared and structurally characterized. Each of these centrosymmetric tetrathia dimers includes two cyclohexane rings in chair conformations with either 1,4-cis or 1,4-trans bonding and two meta-substituted benzene rings. The cis isomer packs into the monoclinic space group P2₁/a with a = 10.485(3)Å, b = 10.3956(18)Å, c = 14.1343(10)Å, = 105.200(13)°, Z = 2 and refined to an R factor of 0.046. The trans isomer crystallizes in the monoclinic space group P2₁/c with a = 10.7217(12)Å, b = 5.6797(7)Å, c = 25.415(5)Å, = 96.001(12)°, Z = 2 and refined to an R factor of 0.043. In the cis structure each benzene ring faces a cyclohexane ring while in the trans structure the cyclohexane rings face one another.     

The structures of N-(t-butoxycarbonyl)-3-methylbenz[f]indole and N-benzenesulfonyl-4-bromo-3-methylbenz[f]indole

N-(t-butoxycarbonyl)-3-methylbenz[f]indole,1, C₁₈H₁₉NO₂, crystallizes in orthorhombic space groupPna2₁ witha=6.0338(2),b=24.839(4),c=10.2481(7) Å,V=1535.9(3) ų,Z=4. The structure was refined toR=0.051 for 2007 observed reflections. The benz[f]indole ring system is nearly planar, exhibiting mean deviation of 0.048 Å. The ester plane of thet-butoxycarbonyl substituent is nearly coplanar with the benz[f]indole ring system, forming a C?N?C=O torsion angle with magnitude 10.6(5)⁰.N-benzenesulfonyl-4-bromo-3-methyl-benz[f]indole,2, C₁₉H₁₄BrNO₂S crystallizes in triclinic space groupP?1 witha=8.1400(5),b=10.0587(8),c=10.8863(7) Å, α=89.927(7), β=110.495(5), γ=96.846(6)⁰,V=828.2(3) ų,Z=2. The structure was refined toR=0.050 for 2653 observed reflections. The benz[f]indole ring system is nearly planar, with mean deviation 0.016 Å, and forms a dihedral angle of 80.93(9)⁰ with the phenyl plane.     

Characterization and structural analyses of trimethoxy and triethoxybenzo[b]thiophene

The crystal and molecular structures of two methoxybenzo [b] thiophenes have been determined by three-dimensional, single-crystal X-ray diffractometry. Both 3-(3,4,5-trimethoxybenzoyl)-2-(4-methoxyphenyl)-6-methoxybenzo[b]thiophene and 3-(3,4,5-triethoxybenzoyl)-2-(4-methoxyphenyl)-6-methoxybenzo[b]thiophene (hereafter referred to as I and II, respectively) crystallize in the triclinic centrosymmetric space group (No. 2, C¹) with two formula units per cell with a = 6.842(1) Å, b = 12.602(2) Å, c = 13.815(2) Å, = 94.80(1)°, = 98.27(2)°, and = 100.59(2)° and a = 10.600(1), b = 11.415(2), c = 12.137(2) Å, = 94.57(1)°, = 101.18(1)°, and = 110.45(1)°, respectively. The phase problems were solved by direct methods and the respective final full-matrix least-squares refinements converged to R = 0.039 and 0.068. The structures differ in the orientation of the trimethoxy and triethoxy groups of the benzoyl ligands. The molecules in the crystal lattice are held together by van der Waals forces. Selected bond distances, angles, and torsion angles are tabularized as well as reference to the synthesis of the title compounds and peripheral studies.     

The structure of 2-amino-3-cyano-4-(4-methylphenyl)-6-methoxyl-1,4,9,10-tetrahydrobenzo[<Emphasis Type="Italic">f</Emphasis>]chromene

The X-ray crystal structure of 2-amino-3-cyano-4-(4-methylphenyl)-6-methoxyl-1,4,9,10-tetrahydrobenzo [f]chromene 1, C₂₂H₂₀N₂O₂, is determined. The crystals of compound 1 are triclinic, space group P-1, a = 10.120(1), b = 13.127(1), c = 15.203(2) Å, = 67.841(9), = 80.81(1), = 77.58(1), Z = 4, V = 1819.7(4) ų. It is interesting that all the atoms of the pyran ring are coplanar, which is different from other similar compounds. The structure is stabilized by intermolecular hydrogen bonds.     

Crystal structures of 2,4,9-trimethyl-(3ar,4c,9c,9ac)-3a,4,9,9a-tetrahydro-benzo[?] isoindole-1,3-dione(endo), C15H17NO2 (1), and 2-methyl-(3ac,9ac)-3a,4,9,9a-tetrahydro-4r,9c-ethano-benzo[?]isoindole-1, 3-dione(endo), C15H15NO2 (2)

The title compounds crystallize in the space group P-1 (compound 1), with a = 7.198(2) Å, b = 7.965(2) Å, c = 12.707(2) Å, α = 72.05(1)^∘, β = 87.65(2)^∘, γ = 65.18(2)^∘ and Pbca (compound 2), with a = 8.156(3) Å, b = 13.177(3) Å, c = 22.742(4) Å. The chiral centers in both compounds C3a, C4, C9, C9a are either R, S, R, S or S, R, S, R (compound 1) and either R, R, S, S or S, S, R, R (compound 2) because of the centric space group.     

Crystal structures of mollugin and lucidin

Mollugin was isolated from the extract of Rubia tinctorum roots. Lucidin was obtained by semisynthesis from xanthopurpurin. Mollugin crystallises in space group P-1 (No. 2), a = 8.5857(7), b = 11.473(4), c = 15.024(1) Å, α = 77.64(2)^∘, β = 89.36(1)^∘, γ = 89.71(2)^∘, and V = 1445.5(5) ų, lucidin crystallises in space group P2₁/c (No.14), a = 16.800(6), b = 9.637(2), c = 7.073(7) Å, β = 98.01(5)^∘, and V = 1134(1) ų.     

Crystal structure of 4-methyl-2-phenylbenzo[de]cyclobut[i] isoquinoline-3,5(2H)-dione

4-Methyl-2-phenylbenzo[de]cyclobut[i]isoquinoline-3,5(2H)-dione, C₂₁H₁₅NO₂, resulted from the photochemical reaction of N-methyl-1,8-naphthalenedicarboximide with phenylacetylene, has been characterized by ¹H NMR, IR, and MS spectra and established by single-crystal X-ray crystallography. The crystal structure belongs to the monoclinic space group P2₁/n with cell parameters a = 12.530(2) Å, b = 9.324(2) Å, c = 13.296(2) Å, = 96.85(1), V = 1542.3(4) ų, and Z = 4.     

Crystal Structure of 2, 8, 14, 20-<Emphasis Type="Italic">tert</Emphasis>-Butylpyrogallol[4]arene

Abstract  The aromatic derivative 2, 8, 14, 20-tert-butylpyrogallol[4]arene was synthesized by the acid catalyzed condensation of pivalaldehyde and pyrogallol in refluxing aqueous ethanol. Single crystal X-ray analysis revealed that the molecule crystallizes in the monoclinic crystal system; space group: P2₁/c. Unit cell dimensions: a = 11.1175(7) ?, α = 90°, b = 23.4525(15) ?, β = 101.6720(10)°, c = 21.9595(14) ?, γ = 90°, D_calc = 1.205 Mg/m³ g/m³ for Z = 4. In the solid state, the macrocycle is found to adopt a crown structure that is unique for the rcct conformation. Graphical abstract   Crystal Structure of 2, 8, 14, 20- tert -Butylpyrogallol[4]arene Eric E. Dueno, Allen D. Hunter, Matthias Zeller, Thomas A. Ray, Ralph N. Salvatore, Cesar H. Zambrano Acid catalyzed condensation of pyrogallol and pivalaldehyde in refluxing aqueous ethanol afforded a pyrogallol[4]arene derivative in good yield. Single crystal X-ray diffraction analysis revealed that a new calyx-like structure was formed under the reaction conditions. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

The hydrogen bonding in 2-amino-3-cyano-4-(3-nitrophenyl)-4,6-dihydro-5H-pyrano[3,2-c]quinolin-5-one N,N-dimethylformamide solvate monohydrate

The crystal structure of 2-amino-3-cyano-4,6-dihydro-4-(3-nitrophenyl)-5H-pyrano[3,2-c]quinolin-5-one N,N-dimethylformamide solvate monohydrate is determined by room temperature X-ray diffraction. The title compound 1, C₂₂H₂₁N₅O₆, is triclinic, space group P-1, a=9.109(2) ?, b=11.340(2) ?, c=12.485(2) ?, α=70.02(1)°, β=69.36(1)°, γ=67.32(1)°, Z=2, V=1081.4(4) ?³. It is interesting that a bridge-like hydrogen bond O–H···O is formed between the title compound and solvent molecules of water with molecular ratio of 2:2 building a bi-layer framework. In addition, there are two other types of classical hydrogen bonds N–H···N and N–H···O in the crystal structure.Supplementary material Crystallographic data for the structure reported in this paper have been deposited with the Cambridge Crystallographic Data Centre as supplementary publication no. CCDC-275001. Copies of available material can be obtained, free of charge, on application to the Director, CCDC, 12 Union Road, Cambridge CB2 1EZ, UK, (fax: +44-(0) 1223–336033 or e-mail: deposit@ccdc.cam.ac.uk).     

Synthesis and crystal structures of 2-amino-3-cyano-4-(2-chlorophenyl)-1,4-dihydro-2H-pyrano[3, 2-h]quinoline and 2-amino-3-cyano-4-(2-chlorophenyl)-8-(2-chlorobenzylidene)-1,4,5,6,7,8-hexahydrobenzo[b]pyran

The title compounds 2-amino-3-cyano-4-(2-chlorophenyl)-1,4-dihydro-2H-pyrano[3, 2-h]quinoline 1 (C₁₉H₁₂ClN₃O, M _r = 333.77) and 2-amino-3-cyano-4-(2-chlorophenyl)-8-(2-chlorobenzylidene)-1,4,5,6,7,8-hexahydrobenzo[b]pyran 2 were synthesized and crystallized. The crystals of compound 1 are triclinic, space group P-1, a = 7.488(2), b = 9.127(3), c = 12.252(3) Å, = 73.58(2), = 78.38(2)°, = 75.39(2), Z = 2, V = 769.5(4) ų; The compound 2 crystallizes in space group P2₁/n, with cell parameters a = 13.582(2), b = 8.974(1), c = 16.960(2) Å, = 103.34(1)° and D _calc = 1.352 g/cm^–3 for Z = 4. X-ray analysis reveals that atoms C(1)—C(5) and O form a pyran ring in compound 1, which adopts half-chair conformation. In compound 2 the atoms C(12)—C(16) and O form a pyran ring which adopts boat conformation, another six-membered ring (C(8)—C(13)) adopts a half-chair conformation. In addition, there are intermolecular hydrogen bonds in the crystal structures 1 and 2.     

Crystal structures of a series of 3,8-di[-2-aryl-1-azenyl]-1,3,6,8-tetraazabicyclo[4.4.1]undecanes

The crystal and molecular structure of a series of 3,8-di[-2-aryl-1-azenyl]-1,3,6,8-tetraazabicyclo[4.4.1]undecanes (1–5) have been determined by single crystal X-ray diffraction analysis. In all five compounds, the tetraazabicycloundecane portion of the molecule assumes a cage-like, folded structure with the aryltriazene moieties aligned approximately parallel; the structure is held in the folded configuration by either intramolecular or intermolecular – stacking forces. Crystal data: 1 C₁₉H₂₂N₁₀O₄, monoclinic space group P2₁/c, a = 10.1846(7), b = 9.9556(7), c = 20.819(2) Å, = 98.725(1)°, V = 2086.5 (3) ų, Z = 4; 2 C₂₃H₂₈N₈O₄, triclinic, space group P, a = 6.7064(7), b = 12.9662(14), c = 14.054(2) Å, = 94.796(2), = 91.621(2), = 104.836(2)°, V = 1175.7(2) ų, Z = 2; 3 C₁₉H₂₂N₁₀O₄, monoclinic, space group P2₁/c, a = 14.237(2), b = 13.520(2), c = 11.5805(12) Å, = 113.514(2)°, V = 2044.0(4) ų, Z = 4; 4 C₂₁H₂₂N₁₀, monoclinic, space group C2/c, a = 54.247(3), b = 11.5531(7), c = 12.9670(7) Å, = 95.710(1)°, V = 8086.4(8) ų, Z = 16; 5 C₂₅H₃₂N₈ 0₄, monoclinic, space group P2₁/c, a = 10.2908(7), b = 16.5687(12), c = 15.1662(10) Å, = 94,188(1)°, V = 2579.0(3) ų, Z = 4.     

Crystal structures of substituted imidazolidine derivatives

The crystal structures of isoxazole, 3-[[dihydro-2-[(Z)-2-oxohyrazono]-1H-imidazol-1-(3H)-yl]methyl-5-phenyl-,N-oxide] (C₁₃H₁₃N₅O₃) (I), isoxazole,3-[[dihydro-2-[(Z)-2-oxohyrazono]-1H-imidazol-1-(3H)-yl]-methyl-5-(4-methylphenyl)-,N-oxide] (C₁₄H₁₅N₅O₃) (II) and isoxazole, 3-[[dihydro-2-[(Z)-2-oxohyrazono]-1H-imidazol-1-(3H)-yl]-methyl-5-(2-methoxyphenyl)-,N-oxide] (C₁₄H₁₅N₅O₄) (III) have been determined by X-ray diffraction studies. The compound I, crystallized in triclinic space group with unit cell dimensions a = 7.2405(7) ?, b = 7.9936(8) ?, c = 11.6573(11) ?, α = 97.801(2)°, β = 90.884(2)°, γ = 96.250(2)° and Z = 2. Compound II crystallized in orthorhombic space group Pna2₁ with unit cell dimensions a = 10.1778(10) ?, b = 28.228(3) ?, c = 5.1206(5) ?, and Z = 4. Compound III crystallized in monoclinic space group P2₁/n with unit cell dimensions a = 7.8439(9) ?, b = 7.8544(9) ?, c = 23.534(3) ?, β = 99.464(2)° and Z = 4. For all three compounds, the five-membered imidazolidine ring adopts an envelope conformation. The crystal structures are stabilized by both the intramolecular N–H···O and intermolecular N–H···N hydrogen bonding.     

Crystal structures of two modifications oftrans-1,3-bis(3,4-dimethoxyphenyl)-2,3-epoxy-1-propanone

trans-1,3-Bis(3,4-dimethoxyphenyl)-2,3-epoxy-1-propanone exhibits dimorphism and crystallizes in a monoclinic form from ethanol and in a trigonal form from chloroform/hexane. The crystal structures of the two modifications were determined by single-crystal X-ray diffraction methods. The monoclinic form crystallizes in space groupP2_t/c with ,b=7.986(1),c=25.223(4) , =94.83(2)°,V=1747.9(6) andZ=4.R=0.052 for 1236 reflections [I>3(I)]. The trigonal form crystallizes in space group witha=36.048(6),c=8.313(5) ,V=9355(6) andZ=18 (hexagonal axes).R=0.101 for 1216 reflections [I>3(I)]. In the trigonal crystals there are channels in thec-direction with a diameter of approximately 10 . Possible explanations for the comparatively highR-value are discussed.     

New sulfur derivatives of 2,3-dichloropyrrolo[1,2-a] benzimidazol-1-one. Demonstration of regioselective thiolate addition and X-ray diffraction structures of 2-chloro-3-methylthiopyrrolo[1,2-a]benzimidazol-1-one and 2,3-di(benzylthio)pyrrolo[1,2-a]benzimidazol-1-one

The reaction of thiols with the heterocyclic compound 2,3-dichloropyrrolo[1,2-a] benzimidazol-1-one (1) has been investigated as a route to new redox-active, bidentate sulfur ligands. Treatment of 1 with either methylthiol or benzylthiol in the presence of pyridine affords monosulfide compounds 2-chloro-3-methylthiopyrrolo[1,2-a] benzimidazol-1-one (2) and 2-chloro-3-benzylthiopyrrolo[1,2-a]benzimidazol-1-one (3) and the disulfide derivatives 2,3-di(methylthio)pyrrolo[1,2-a]benzimidazol-1-one (4) and 2,3-di(benzylthio)pyrrolo[1,2-a]benzimidazol-1-one (5). The substitution of the first chlorine group in 2,3-dichloropyrrolo[1,2-a]benzimidazol-1-one (1) occurs regioselectively at C-3 to produce 2-chloro-3-methylthiopyrrolo[1,2-a]benzimidazol-1-one (2) and 2-chloro-3-benzylthiopyrrolo[1,2-a]benzimidazol-1-one (3), followed by replacement of the remaining chlorine group to furnish the disulfide compounds 4 and 5. The new thiols have been isolated by column chromatography and characterized in solution by spectroscopic methods. The molecular structures of 2-chloro-3-methylthiopyrrolo[1,2-a]benzimidazol-1-one and 2,3-di(benzylthio)pyrrolo[1,2-a]benzimidazol-1-one have been determined by X-ray crystallography. Compound 2 crystallizes as two independent molecules in the monoclinic space group P2₁/c, a = 13.221(2) Å, b = 18.478(2) Å, c = 8.948(1) Å, = 100.088(3)°, V = 2152.3(5) ų, Z = 8, and d_calc = 1.547 Mg/m³; R = 0.0354, R_w = 0.0739 for 2820 reflections with I > 2(I). Compound 5 crystallizes in the triclinic space group P-1, a = 5.180(1) Å, b = 11.494(2) Å, c = 17.243(3) Å, = 86.024(3)°, = 88.606(4)°, = 81.235(3)°, V = 1012.1(4) ų, Z = 2, and d_calc = 1.360 Mg/m³; R = 0.0354, R_w = 0.0692 for 2655 reflections with I > 2(I). The redox properties of the disulfide compounds 4 and 5 have been explored by cyclic voltammetry, where a one-electron reduction at ca. –1.10 V has been observed for each compound. The site of electron accession in has been established by carrying out molecular orbital calculations at the extended Hüuckel level on the model compound 2,3-di(thio)pyrrolo[1,2-a]benzimidazol-1-one.     

Crystal structure oftrans-tetrachlorobis[2-(2-1H-imidazolyl)-1H-imidazolium]cadmium(II), [Cd(H3biim)2Cl4]

The reaction between cadmium(II) chloride and 2,2'-bi-1H-imidazole (H₂biim) in an acidic solution affords [Cd(H₃biim)₂Cl₄] (H₃biim=2-(2-1H-imidazolyl)-1H-imidazolium) in 63% yield. The compound crystallizes in the triclinic space groupP1, wherea=8.072(2),b=8.100(2),c=8.593(2) Å, =75.89(2), =62.94(2), =63.29(1)°,V=446.4(2) ų, andZ=1. The central Cd atom exhibits an octahedral geometry composed of a Cl₄N₂ core. The Cd-N bond distance is 2.392(2) Å. Cd–Cl distances are 2.5919(9) and 2.671(1) Å.     

全取代环戊基六元瓜环晶体制备及其晶体结构研究

研究了对全取代环戊基六元瓜环(CyP6Q6)与结构诱导剂ZnCl2在稀盐酸条件下长的晶体进行X-射线单晶衍射分析.通过实验得到一个新的晶体,其结构表明,晶体属于斜方晶系,空间群为P21/n,a=27.599(7)(A),6=17.393(7)(A),c=18.265(5)(A),α=90.00°,β=93.369(6)°,γ=90.00°,Z=4,R=0.046,其中结构中出现了蜂巢效应并且形成了较大的孔道.