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1.
Interactions between metal ions and amino acids are common both in solution and in the gas phase. Here, the effect of metal ions and water on the structure of glycine is examined. The effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water on structures of Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (m = 0, 2, 5) complexes have been determined theoretically by employing the hybrid B3LYP exchange-correlation functional and using extended basis sets. Selected calculations were carried out also by means of CBS-QB3 model chemistry. The interaction enthalpies, entropies, and Gibbs energies of eight complexes Gly.Mn+ (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) were determined at the B3LYP density functional level of theory. The computed Gibbs energies DeltaG degrees are negative and span a rather broad energy interval (from -90 to -1100 kJ mol(-1)), meaning that the ions studied form strong complexes. The largest interaction Gibbs energy (-1076 kJ mol(-1)) was computed for the NiGly2+ complex. Calculations of the molecular structure and relative stability of the Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+; m = 0, 2, and 5) systems indicate that in the complexes with monovalent metal cations the most stable species are the NO coordinated metal cations in non-zwitterionic glycine. Divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ prefer coordination via the OO bifurcated bonds of the zwitterionic glycine. Stepwise addition of two and five water molecules leads to considerable changes in the relative stability of the hydrated species. Addition of two water molecules at the metal ion in both Gly.Mn+ and GlyZwitt.Mn+ complexes reduces the relative stability of metallic complexes of glycine. For Mn+ = Li+ or Na+, the addition of five water molecules does not change the relative order of stability. In the Gly.K+ complex, the solvation shell of water molecules around K+ ion has, because of the larger size of the potassium cation, a different structure with a reduced number of hydrogen-bonded contacts. This results in a net preference (by 10.3 kJ mol(-1)) of the GlyZwitt.K+H2O5 system. Addition of five water molecules to the glycine complexes containing divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ results in a net preference for non-zwitterionic glycine species. The computed relative Gibbs energies are quite high (-10 to -38 kJ mol(-1)), and the NO coordination is preferred in the Gly.Mn+(H2O)5 (Mn+ = Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) complexes over the OO coordination.  相似文献   

2.
Development and applications of fluorescent indicators for Mg2+ and Zn2+   总被引:1,自引:0,他引:1  
In a study of the spectroscopic behavior of two Schiff base derivatives, salicylaldehyde salicylhydrazone (1) and salicylaldehyde benzoylhydrazone (2), Schiff base 1 has high selectivity for Zn(2+) ion not only in abiotic systems but also in living cells. The ion selectivity of 1 for Zn(2+) can be switched for Mg(2+) by swapping the solvent from ethanol-water to DMF (N,N-dimethylformamide)-water mixtures. Imine 2 is a good fluorescent probe for Zn(2+) in ethanol-water media. Many other ions tested, such as Li(+), Na(+), Al(3+), K(+), Ca(2+), Cr(3+), Mn(2+), Fe(3+), Co(2+), Ni(2+), Cu(2+), Ag(+), Cd(2+), Sn(2+), Ba(2+), Hg(2+), and Pb(2+), failed to induce any spectral change in various solvents. The selectivity mechanism of 1 and 2 for metal ions is based on a combinational effect of proton transfer (ESPT), C═N isomerization, and chelation-enhanced fluorescence (CHEF). The coordination modes of the complexes were investigated.  相似文献   

3.
Saito S  Sasamura S  Hoshi S 《The Analyst》2005,130(5):659-663
A high resolution of doubly charged first row transition (Fe, Cu, Zn, Ni, Co, Mn) and heavy metal (Pb, Cd, Hg) ions was achieved in capillary electrophoresis (CE) with high sensitivity (sub-micromol dm(-3) level), using NN,N'N'-tetrakis(2-pyridylmethyl)ethylenediamine (TPEN) as a pre-capillary derivatizing agent. The non-charged reagent, TPEN, was applied to capillary zone electrophoresis (CZE) for the first time. Since complete spatial separation between the complexes and the ligand was carried out in a carrier buffer, which was free of TPEN, kinetic inertness of metal complexes was necessary for the detection in this pre-capillary method. All the nine listed metal complexes were detected: Ca(2+), Mg(2+), Al(3+), Fe(3+), and Co(3+) complexes were undetectable. This, interestingly, suggests that those nine cations form kinetically inert tpen complexes without strong charge-charge interactions between the metal ion and the ligand. It is expected that the hard-soft-acid-base (HSAB) principle governed the kinetics selectivity. With respect to the electrophoretic behavior, the addition of chloride ion and methanol to the carrier significantly improved the resolution. This is due to the formation of ternary complexes or ion aggregates and the solvation effect, respectively. These effects provided a satisfactory baseline resolution among the nine metal ions. An application to biological samples was demonstrated. Some metal ions in human serum and urine were successfully detected in a simple process without the need for deproteinization using a non-coated fused-silica capillary because of the differenciation in the direction of migration between organic matter and complexes.  相似文献   

4.
Solvation of metal cations has attracted substantial interest on account of its functional importance in biological systems. In the present study, we undertake a comprehensive analysis of hydrated complexes of Mg2+ with up to 20 water molecules using MP2/cc-pVTZ and density functional theory (DFT) calculations. The effect of first, second, and higher solvation shells on magnesium coordination has been systematically analyzed by considering Mg2+(H2O) n complexes. Numerous competing conformations for each of the metal ion complexes have been explored and the minima structures obtained were further analyzed. The study probes the relative preferences among various coordination numbers and unambiguously establishes that coordination number 6 is the most optimal choice. The relative abundance of Mg2+ ion and its coordination with water and other ligands has been analyzed in the Protein Data Bank and Cambridge Structural Database. It is noted that the M–O distance and charge transfer to metal ion increase as the number of solvating water molecules increases. The computational studies are in excellent agreement with the experimental observations, and provide support to multiple coordinate site preferences for Mg2+.  相似文献   

5.
3d金属离子对H2O2氧化活性艳红的催化性能   总被引:1,自引:0,他引:1  
以H2O2氧化活性艳红为研究对象,探讨了七种3d金属离子的催化性能、影响因子及其作用、氧化降解动力学和催化作用机理.通过对pH值、氧化剂用量、金属离子浓度、温度的影响研究,确定了七种3d轨道过渡金属离子的催化性能大小为:Fe^3+〉Cu^2+〉Co^2+〉Mn^2+〉Cr^3+〉Ni^2+〉Zn^2+.在此基础上得到了该催化氧化反应的一级动力学模型,通过一级动力学模型求得各个金属离子的表观活化能,从活化能的大小得出受温度影响大小的顺序为:Cr^3+〉Mn^2+〉Co^2+〉Cu^2+〉Ni^2+〉Zn^2+〉Fe^3+.  相似文献   

6.
Stepwise complex formation is observed between 2,3,5,6-tetrakis(2-pyridyl)pyrazine (TPPZ) and a series of metal ions (M(n+) = Sc3+, Y3+, Ho3+, Eu3+, Lu3+, Nd3+, Zn2+, Mg2+, Ca2+, Ba2+, Sr2+, Li+), where TPPZ forms a 2:1 complex [(TPPZ)2-M(n+)] and a 1:1 complex [TPPZ-M(n+)] with Mn+ at low and high concentrations of metal ions, respectively. The fluorescence intensity of TPPZ begins to increase at high concentrations of metal ions, when the 2:1 (TPPZ)2-M(n+) complex is converted to the fluorescent 1:1 TPPZ-M(n+) complex. This is regarded as an "OFF-OFF-ON" fluorescence sensor for metal ions depending on the stepwise complex formation between TPPZ and metal ions. The fluorescence quantum yields of the TPPZ-M(n+) complex vary depending on the metal valence state, in which the fluorescence quantum yields of the divalent metal complexes (TPPZ-M2+) are much larger than those of the trivalent metal complexes (TPPZ-M3+). On the other hand, the binding constants of (TPPZ)2-M(n+) (K1) and TPPZ-M(n+) (K2) vary depending on the Lewis acidity of metal ions (i.e., both K1 and K2 values increase with increasing Lewis acidity of metal ions). Sc3+, which acts as the strongest Lewis acid, forms the (TPPZ)2-Sc3+ and TPPZ-Sc3+ complexes stoichiometrically with TPPZ. In such a case, "OFF-OFF-ON" switching of electron transfer from cobalt(II) tetraphenylporphyrin (CoTPP) to O2 is observed in the presence of Sc3+ and TPPZ depending on the ratio of Sc3+ to TPPZ. Electron transfer from CoTPP to O2 occurs at Sc3+ concentrations above the 1:2 ratio ([Sc3+]/[TPPZ]0 > 0.5), when the (TPPZ)2-Sc3+ complex is converted to the TPPZ-Sc3+ complex and TPPZ-(Sc3+)2, which act as promoters of electron transfer (ON) by the strong binding of O2*- with Sc3+. In sharp contrast, no electron transfer occurs without metal ion (OFF) or in the presence at Sc3+ concentrations below the 1:2 ratio (OFF), when the (TPPZ)2-Sc3+ complex has no binding site available for O2*-.  相似文献   

7.
杨娥  周立新  章永凡 《结构化学》2002,21(1):103-109
在B3LYP、HF和MP2水平上运用全电子从头算(AE)和相对论有效实势(RECP)及6-311+G**和LanL2DZ基组计算Ⅰa、Ⅰb、Ⅱa和Ⅱb族金属离子与磷酸二甲酯阴离子(DMP-)的相互作用。 RECP用于除Li+、Be2+外所有的金属离子。 对Na+、K+、Cu+、Mg2+、Ca2+、Zn2+用AE和RECP 2种方法处理。 结果表明:RECP能可靠地用于重金属离子络合物; 二价金属离子络合物(DMP-—M2+)比一价金属离子络合物 (DMP-—M+)稳定;二价金属离子(M2+)可能比一价金属离子(M+)更易使多核苷酸折叠。  相似文献   

8.
Liu Y  Zhang N  Chen Y  Wang LH 《Organic letters》2007,9(2):315-318
A water-soluble fluorescent zinc sensor which binds strongly to Zn2+ (log K = 12.4) was successfully synthesized under physiological conditions. This sensor exhibits a good fluorescence response to Zn2+ over a wide pH range in water. Under the same conditions, several metal ions commonly present in a physiological environment, such as Na+, K+, Ca2+, Mg2+, Mn2+, Fe2+, and Co2+, showed little interference to the fluorescence response to Zn2+. [structure: see text]  相似文献   

9.
李睿  李航 《物理化学学报》2010,26(3):552-560
通过恒流法研究了不同表面电场作用下Mg2+、Ca2+吸附动力学. 结果发现: (1)实验初期阶段是强静电力作用下的零级动力学过程和一定反应时间后的弱静电力作用下的一级动力学过程, 且零级速率过程和一级速率过程之间存在明显的转折点; (2)不同电解质构成中Ca2+的吸附速率明显快于Mg2+的, 平衡吸附量也大于Mg2+的, 且Ca2+在土壤颗粒表面的覆盖度比Mg2+在土壤颗粒表面的覆盖度高; (3)离子的相对有效电荷系数与土壤颗粒表面电场作用的不同是各体系中Ca2+、Mg2+吸附动力学有差别的根本原因; (4)根据离子吸附的理论模型可以分别计算出速率系数、平衡吸附量、离子在土壤颗粒表面的覆盖度以及固定液的体积, 这些参数可以定量评估土壤颗粒表面电场对离子吸附动力学的影响.  相似文献   

10.
Molecular dynamics simulations have been performed to investigate the role of Mg2+ in the full-length hammerhead ribozyme cleavage reaction. In particular, the aim of this work is to characterize the binding mode and conformational events that give rise to catalytically active conformations and stabilization of the transition state. Toward this end, a series of eight 12 ns molecular dynamics simulations have been performed with different divalent metal binding occupations for the reactant, early and late transition state using recently developed force field parameters for metal ions and reactive intermediates in RNA catalysis. In addition, hybrid QM/MM calculations of the early and late transition state were performed to study the proton-transfer step in general acid catalysis that is facilitated by the catalytic Mg2+ ion. The simulations suggest that Mg2+ is profoundly involved in the hammerhead ribozyme mechanism both at structural and catalytic levels. Binding of Mg2+ in the active site plays a key structural role in the stabilization of stem I and II and to facilitate formation of near attack conformations and interactions between the nucleophile and G12, the implicated general base catalyst. In the transition state, Mg2+ binds in a bridging position where it stabilizes the accumulated charge of the leaving group while interacting with the 2'OH of G8, the implicated general acid catalyst. The QM/MM simulations provide support that, in the late transition state, the 2'OH of G8 can transfer a proton to the leaving group while directly coordinating the bridging Mg2+ ion. The present study provides evidence for the role of Mg2+ in hammerhead ribozyme catalysis. The proposed simulation model reconciles the interpretation of available experimental structural and biochemical data, and provides a starting point for more detailed investigation of the chemical reaction path with combined QM/MM methods.  相似文献   

11.
The effects of transition metal ions (M2+) such as Mn2+, Co2+, Ni2+, and Cu2+ on the functional and structural stabilities of horseradish peroxidase (HRP) were investigated with respect to reversible chemical denaturation, Michaelis-Menten kinetics, chemical modification and time-dependent catalytic activity. Conformational Gibbs free energy (deltaGo(H2O)) as a structural stability criterion and transition concentrations of metal ions ([M2+] 1/2) were estimated using a two-state chemical denaturation model. Activation and inhibitory concentration ranges for each metal ion were specified by the steady-state enzyme kinetics. Results of a pH-profile method confirmed by chemical modification indicate that a histidine residue interacts in the activation concentration range, whereas carboxylic residues (Asp and Glu) contribute to interaction in the inhibitory concentration range. Incubation of the enzyme with the metal ion at activation concentration leads to long-term functional stability of peroxidase. Thus, such metal ions as potent effectors induced the enhancement of conformational and functional stabilities of horseradish peroxidase.  相似文献   

12.
The unimolecular reactivity of M(2+)(H(2)O)(2), M = Be, Mg, Ca, Sr, and Ba, is investigated by density functional theory. Dissociation of the complex occurs either by proton transfer to form singly charged metal hydroxide, MOH(+), and protonated water, H(3)O(+), or by loss of water to form M(2+)(H(2)O) and H(2)O. Charge transfer from water to the metal forming H(2)O(+) and M(+)(H(2)O) is not favorable for any of the metal complexes. The relative energetics of these processes are dominated by the metal dication size. Formation of MOH(+) proceeds first by one water ligand moving to the second solvation shell followed by proton transfer to this second-shell water molecule and subsequent Coulomb explosion. These hydroxide formation reactions are exothermic with activation energies that are comparable to the water binding energy for the larger metals. This results in a competition between proton transfer and loss of a water molecule. The arrangement with one water ligand in the second solvation shell is a local minimum on the potential energy surface for all metals except Be. The two transition states separating this intermediate from the reactant and the products are identified. The second transition state determines the height of the activation barrier and corresponds to a M(2+)-OH(-)-H(3)O(+) "salt-bridge" structure. The computed B3LYP energy of this structure can be quantitatively reproduced by a simple ionic model in which Lewis charges are localized on individual atoms. This salt-bridge arrangement lowers the activation energy of the proton-transfer reaction by providing a loophole on the potential energy surface for the escape of H(3)O(+). Similar salt-bridge mechanisms may be involved in a number of proton-transfer reactions in small solvated metal ion complexes, as well as in other ionic reactions.  相似文献   

13.
The binding of hydrated Mg2+ and Ca2+ ions with a DNA fragment containing two phosphate groups, three sugar units, and a G.C base pair is modeled in the anion and dianion states using a three-layer ONIOM approach. A monodentate binding mode was the most stable structure observed for both the ions in the anion model. However, the interactions of Mg2+ and Ca2+ with the dianion model of the DNA fragment gave rise to a large structural deformation at the base pair region, leading to the formation of "ring" structures. In both anion and dianion models, Mg2+-bound structures were considerably more stable than the corresponding Ca2+-bound structures. This feature and the formation of ring structures in the dianion models strongly supported the higher coordination power of the Mg2+ toward DNA systems for its compaction. The charge of the DNA fragment appeared to be crucial in deciding the binding strength as well as the binding mechanism of the metal ions. To the best of our knowledge, this is the first theoretical investigation of the interaction of a comparatively larger DNA model system with the biologically important Mg2+ and Ca2+ ions.  相似文献   

14.
Electron capture dissociation (ECD) of the peptide Substance P (SubP) complexed with divalent metals has been investigated. ECD of [SubP + H + M]3+ (M2+ = Mg2+ -Ba2+ and Mn2+ -Zn2+) allowed observation of a larger number of product ions than previous investigations of doubly charged metal-containing peptides. ECD of Mg-Ba, Mn, Fe, and Zn-containing complexes resulted in product ions with and without the metal from cleavage of backbone amine bonds (c' and z* -type ions). By contrast, ECD of Co and Ni-containing complexes yielded major bond cleavages within the C-terminal methionine residue (likely to be the metal ion binding site). Cu-containing complexes displayed yet another behavior: amide bond cleavage (b and y'-type ions). We believe some results can be rationalized both within the hot hydrogen atom mechanism and mechanisms involving electron capture into excited states, such as the recently proposed amide superbase mechanism. However, some behavior, including formation of (cn 'M - H)+ ions for Ca-Ba, is best explained within the latter mechanisms with initial electron capture at the metal. In addition, the ECD behavior appears to correlate with the metal second ionization energy (IE2). Co and Ni (displaying sequestered fragmentation) have IE2s of 17.1 and 18.2 eV, respectively, whereas IE2s for Mg-Ba, Mn, and Fe (yielding random cleavage) are 10.0 to 16.2 eV. This behavior is difficult to explain within the hot hydrogen atom mechanism because hydrogen transfer should not be influenced by IE2s. However, the drastically different fragmentation patterns for Co, Ni, and Cu compared to the other metals can also be explained by their higher propensity for nitrogen (as opposed to oxygen) binding. Nevertheless, these results imply that directed fragmentation can be accomplished via careful selection of the cationizing agent.  相似文献   

15.
设计合成了6个1-乙酰基-3-(2-羟基-4,6二甲氧基苯基)-5-芳基-2-吡唑啉化合物4a~4f.测试了它们的紫外光谱和荧光光谱,研究了其对铜离子的选择性识别作用.结果表明,化合物4f作为铜离子荧光探针,受常见离子干扰较小,对于铜离子有着较高的选择性和较低的检出限.  相似文献   

16.
The prevalence of Mg2+ ions in biology and their essential role in nucleic acid structure and function has motivated the development of various Mg2+ ion models for use in molecular simulations. Currently, the most widely used models in biomolecular simulations represent a nonbonded metal ion as an ion‐centered point charge surrounded by a nonelectrostatic pairwise potential that takes into account dispersion interactions and exchange effects that give rise to the ion's excluded volume. One strategy toward developing improved models for biomolecular simulations is to first identify a Mg2+ model that is consistent with the simulation force fields that closely reproduces a range of properties in aqueous solution, and then, in a second step, balance the ion–water and ion–solute interactions by tuning parameters in a pairwise fashion where necessary. The present work addresses the first step in which we compare 17 different nonbonded single‐site Mg2+ ion models with respect to their ability to simultaneously reproduce structural, thermodynamic, kinetic and mass transport properties in aqueous solution. None of the models based on a 12‐6 nonelectrostatic nonbonded potential was able to reproduce the experimental radial distribution function, solvation free energy, exchange barrier and diffusion constant. The models based on a 12‐6‐4 potential offered improvement, and one model in particular, in conjunction with the SPC/E water model, performed exceptionally well for all properties. The results reported here establish useful benchmark calculations for Mg2+ ion models that provide insight into the origin of the behavior in aqueous solution, and may aid in the development of next‐generation models that target specific binding sites in biomolecules. © 2015 Wiley Periodicals, Inc.  相似文献   

17.
In an analysis of a combined chymotrypsin/AspN digest of galectin-3 by positive ion nano-electrospray ionisation mass spectrometry (nanoESI-MS) several peptides were observed which showed metal adduct ions as their most abundant ion signals. The most prominent adduct ions were observed at m/z values corresponding to [M+40]2+, [M+41]3+, and [M+42]4+ ions. Detailed investigation of the [M+40]2+ ion of the peptide GAPAGPLIVPY showed that it was not, as originally expected, a [M+H+39K]2+ adduct ion but had the composition [M+40Ca]2+. This was verified by several approaches: (i) nanoESI-MS/MS of the [M+Ca]2+ adduct ions resulted in the virtually exclusive formation of doubly charged fragment ions; (ii) mass determination by quadrupole time-of-flight (QTOF)-MS provided a preliminary identification; and (iii) accurate mass measurement using nanoESI Fourier transform ion cyclotron resonance (FTICR)-MS at a mass resolving power of 500 000 allowed the specific detection and identification of the isobaric ion pairs [M+40Ca]2+/[M+H+39K]2+ and [M+24Mg]2+/[M+H+23Na]2+. All peptides in the chymotryptic galectin-3 digest without a basic residue (K or R) showed addition of calcium as the most prominent ionisation principle. A further common feature of these nonbasic peptides was the presence of several proline residues, which is assumed to be a factor promoting the intense addition of calcium. It was observed that the common trace levels of sodium and calcium in analytical grade solvents (about 1-10 microM) are sufficient to generate the [M+H+23Na]2+ and [M+40Ca]2+ ions as the most prominent species of the peptide GAPAGPLIVPY. We conclude that the sequence motifs P-XX-P and P-XXX-P favour the solvation of alkaline earth ions in ESI-MS. In view of the successful detection of physiological Ca/protein interactions by ESI-MS, this finding may point to a solvation of Ca2+ by galectin in solution. The findings open new routes of research in the study of metal/protein and metal/peptide interactions  相似文献   

18.
二价金属离子对鲑鱼精DNA热稳定性的影响   总被引:2,自引:0,他引:2  
二价金属离子与 DNA之间的作用在 DNA复制、转录以及新陈代谢过程中起到重要的作用 ,因此越来越受到关注 [1,2 ] .L uck等 [3 ]指出 ,碱土金属与 DNA分子的磷酸基团发生作用使 DNA的热稳定性升高 ,而二价过渡金属离子主要是与碱基作用而使 DNA热稳定性降低 . Eichhorn等 [4 ] 用变温紫外光谱法研究了在 DNA磷酸根离子的浓度较小 (0~ 4.0 )时 ,多种二价金属离子对小牛胸腺 DNA热稳定性的影响 ,发现 Mg2 + 及过渡金属离子 Mn2 + ,Co2 + 和 Ni2 + 都有利于 DNA的稳定 .最近 ,Duguid等 [5]用差示扫描量热法 (DSC)研究了在 c(M2 +…  相似文献   

19.
黎耀忠  黄裕林 《分子催化》1999,13(3):212-214
在以水溶性铑-膦配合物为催化剂的烯烃氢甲酰化反应中,铑的存在形态及配位结构对烯烃氢甲酰化反应的转化率及选择性起着决定性的作用.在反应过程中,特别是工业生产过程中,会由于各种原因导致一些杂质进入反应体系,这些杂质可能会影响铑-膦配合物催化剂的性质,改变...  相似文献   

20.
利用激光溅射-分子束技术研究了Mg+、 Al+与乙腈分子的气相团簇反应.根据反射式飞行时间质谱检测的结果发现, Mg+、 Al+与乙腈分子反应形成不同尺寸的团簇离子产物,其中Al+与(CHCN)n的结合数n=1~10,而Mg+与(CHCN)n的结合数n=1~5. Al+(CHCN)n、 Mg+(CHCN)n团簇离子产物的强度分布都存在明显的强度间隙现象. Al+与(CHCN)n进行缔合时,出现了两个强度间隙;而Mg+与(CHCN)n进行缔合时,则只存在一个强度间隙. Al+的第一强度间隙在n=4~5,第二强度间隙在n=6~7;而Mg+的强度间隙在n=2~3.  相似文献   

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