Recognition and dissociation kinetics in the interfacial molecular recognition of barbituric acid by amphiphilic melamine-type monolayers

Progress in the understanding of interfacial molecular recognition kinetics is obtained by use of the sweeping technique for experimental studies of the reaction kinetics between a host monolayer and a non-surface-active species dissolved in the aqueous subphase. The experimental results show that the interfacial recognition reaction between a 2C(11)H(23)-melamine (2,4-di(n-undecylamino)-6-amino-1,3,5-triazine) monolayer and dissolved barbituric acid is reversible when the 2C(11)H(23)-melamine/barbituric acid monolayer is transferred back onto a pure water subphase. The kinetics of the recognition and dissociation reaction is experimentally and theoretically investigated. The approximate additive theoretical model developed recently is extended to consider the dissociation kinetics of the interfacial supramolecular complex. The kinetic constants for the recognition and dissociation reactions in the mixed monolayer consisting of 2C(11)H(23)-melamine and 2C(11)H(23)-melamine/barbituric acid complex are determined. It is shown that the kinetic constant of the recognition reaction is nearly independent of temperature, whereas that of the dissociation reaction increases with increasing temperature.     

Supramolecular assemblies and molecular recognition of amphiphilic schiff bases with barbituric acid in organized molecular films

A bolaform Schiff base, N,N'-bis(salicylidene)-1,10-decanediamine (BSC10), has been synthesized and its interfacial hydrogen bond formation or molecular recognition with barbituric acid was investigated in comparison with that of a single chain Schiff base, 2-hydroxybenzaldehyde-octadecylamine (HBOA). It has been found that while HBOA formed a monolayer at the air/water interface, the bolaform Schiff base formed a multilayer film with ordered layer structure on water surface. When the Schiff bases were spread on the subphase containing barbituric acid, both of the Schiff bases could form hydrogen bonds with barbituric acid in situ in the spreading films. As a result, an increase of the molecular areas in the isotherms was observed. The in situ H-bonded films could be transferred onto solid substrates, and the transferred multilayer films were characterized by various methods such as UV-vis and FT-IR spectrosopies. Spectral changes were observed for the films deposited from the barbituric acid subphase, which supported the hydrogen bond formation between the Schiff bases and barbituric acid. By measuring the MS-TOF of the deposited films dissolved in CHCl3 solution, it was concluded that a 2:1 complex of HBOA with barbituric acid and a 1:2 complex of BSC10 with barbituric acid were formed. On the other hand, when the multilayer films of both Schiff bases were immersed in an aqueous solution of barbituric acid, a similar molecular recognition through the hydrogen bond occurred. A clear conformational change of the alkyl spacer in the bolaform Schiff base was observed during the complex formation with the barbituric acid.     

Probing polyvalency in artificial systems exhibiting molecular recognition

An approach to the study of polyvalency-the interaction of polyvalent receptors with polyvalent ligands-in unnatural systems is outlined. In this study, the complexation of dibenzylammonium cations by dibenzo[24]crown-8 or benzometaphenylene[25]crown-8 is utilized as the component receptor-ligand interaction. Two analogous multivalent receptors-each containing either seven dibenzo[24]crown-8 (DB24C8 CLUSTER) or seven benzometaphenylene[25]crown-8 (BMP25C8 CLUSTER) moieties appended to a modified beta-cyclodextrin core-were prepared in moderate yields. For each of these multivalent receptors, complementary mono- and divalent ligands containing one or two dialkylammonium centers, respectively, were prepared in good yields. These ligands contained fluorine atom substituents to allow their interactions with crown ether compounds to be probed by (19)F NMR spectroscopy. The complexation of these monovalent ligands with the DB24C8 CLUSTER and the BMP25C8 CLUSTER was studied by determining the average binding constant (K(AVE)) between the receptors and ligands. The abilities of the crown ether clusters to complex with these monovalent ligands was compared with those of the monovalent crown ethers dibenzo[24]crown-8 and benzometaphenylene[25]crown-8. In both instances, it was found that clustering seven crown ethers together into one molecule is detrimental to the abilities of the crown ether moieties to complex with monovalent dialkylammonium ligands. The complexation of the divalent ligands by the DB24C8 CLUSTER and the BMP25C8 CLUSTER was then studied-again by determining K(AVE)-and their abilities to complex with these ligands was compared with those of their respective component interactions. By determining K(AVE) for the polyvalent interaction, it was possible to calculate an association constant, K(POLY), for the binding of the divalent ligands by the DB24C8 CLUSTER and the BMP25C8 CLUSTER compounds. In both instances K(POLY) for the polyvalent interaction was found to be approximately 2 orders of magnitude higher than the association constants, K(A), for the component interaction.     

Substitution in the barbituric acid molecule

Condensation of barbituric acid with hydrazines with carboxylic acid hydrazides affords barbituric acid 2-hydrazones, as a result of the ketonic character of the 2-carbonyl group. Similarly, condensation with hydrazine hydrate gives the corresponding azine.For part III, see [1].     

Solvation effects in the methylation of barbituric acid and its derivatives by diazomethane

Methylation of barbituric acid and its N-methylderivatives by diazomethane in ethers and methanol occurs only at the oxygen atom of the -dicarbonyl fragment. The resulting 6-methoxy-2,4-dioxo-1,2,3,4-tetrahydropyrimidine and its derivatives are methylated at both the oxygen and nitrogen atoms; relative to ethers, methanol facilitates a greater degree of methylation at the nitrogen atom.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1523–1526, November, 1987.     

Troger's base molecular scaffolds in dicarboxylic acid recognition

Artificial receptors (1-5) have been designed and synthesized from simple precursors. The chain length selectivity studies of dicarboxylic acids within the cavities of new fluorescent Troger's base molecular frameworks (1-3) have been carried out with a critical examination of their role of rigidity as well as flexibility in selective binding in comparison to receptor 5. The chiral resolution of the racemic Troger's base receptors (1 and 2) by chiral recognition with (+)- camphoric acid using hydrogen-bonding interactions has been studied.     

Preparation of 5-diaminomethylenebarbiturates by barbituric acid addition to carbodiimides

Through NMR spectroscopic monitoring of barbituric acid addition to carbodiimide, a general synthetic procedure for the preparation of 5-diaminomethylenebarbiturates (DABA) was developed. This procedure is very simple and applicable to the preparation of large quantities of DABA derivatives. Through an X-ray structural study of one of the DABA derivatives, it was established that these compounds have an ylide-type structure with strong charge separation within the molecule.     

Comparison by mass spectrometry of ring cleavage in barbituric acid and 5-fluorobarbituric acid derivatives

The mass spectrometric behaviour of barbituric acid and 1,3-dimethylbarbituric acid was compared with that of the corresponding 5,5-difluoro derivatives and of some 5-fluoro-5-alkyl derivatives in order to study the influence of fluorine in the fragmentation processes. This investigation, performed using both electron impact ionization and positive- and negative-ion fast atom bombardment, evidences well the role of fluorine in barbiturate ring bond cleavages.     

胆甾类分子钳对氨基酸衍生物的对映选择性识别

用差紫外光谱滴定法考察了以脱氧胆酸作spacer的手性分子钳1～3对一系列α-氨基酸甲酯的对映选择性识别性能。结果表明,分子钳1和2与客体氨基酸甲酯形成1:1型超分子配合物,并显示较好的手性识别能力。分钳3对所考察的氨基酸甲酯均没有明显的识别作用。讨论了主-客体间尺寸/形状匹配、几何互补等因素对形成超分子配合物的影响,并利用计算机模拟作辅助手段对实验结果和现象进行了解释。     

The effect of barbituric acid concentration in the spectrophotometric determination of cyanide and thiocyanate by the pyridine-barbituric acid method

Summary The König reaction forms the basis of many analytical methods including those for the determination of chlorine, nicotinic acid, thiocyanate and cyanide. The colorimetric methods have, however, been plagued with various problems such as the use of hazardous, often carcinogenic compounds, and the instability of the final color formed as well as of the color reagent itself.Using a mixture of pyridine, hydrochloric acid and barbituric acid as the color reagent, the present study shows the effect of barbituric acid concentration on the intensity and stability of the color complex. The problems associated with the use of barbituric acid can be attributed mainly to the high concentration used by previous workers. A color reagent containing about 0.1% (w/v) barbituric acid shows marked improvements in color intensity and stability as well as reagent stability.     

Investigation of intermolecular interaction in molecular complex of tryptamine and benzoic acid by solid-state 2D NMR

Solid-state NMR spectra and powder X-ray diffraction of the two-component molecular complex composed of tryptamine and benzoic acid were observed to investigate the intermolecular interaction in the molecular complex. 1D (13)C CP/MAS NMR spectrum and powder X-ray diffraction pattern of the complex was clearly different from the convolution of each spectrum of the single component. 2D (1)H-(13)C heteronuclear-correlation (HETCOR) NMR technique indicated that the intermolecular interaction between the primary amine of tryptamine and the carboxyl group of benzoic acid must be related to the complex formation.     

Probing the two-stage transition upon crossing the glass transition of polystyrene by solid-state NMR

A two-stage transition upon crossing the glass transition of polystyrene with increasing temperature was precisely determined and interpreted by using solid-state nuclear magnetic resonance(SSNMR), ~1H-~1H dipolar couplings based double quantum-filtered(DQF) and dipolar filter(DF) experiments and ~(13)C chemical shift anisotropy(CSA) based centerband-only detection of exchange(CODEX) experiment are used to fully characterize the time scale of molecular motions during the glass transition. While differential scanning calorimetry(DSC) and CODEX experiment predicted the first stage of glass transiton, DQF and DF experiments provided the evidence for the second stage transition during which the time scale of molecular motions changed from very slow(t ms) to very fast(t μs). The first stage of glass transition begins with the occurrence of remarkable slow re-orientation motions of the polymer backbone segments and ends when the degree of slow motion reaches maximum. The onset and endpoint of the conventional calorimetric glass transition of polystyrene can be quantitatively determined at the molecular level by SSNMR. In the second stage, a subsequent dramatic transition associated with the melting of the glassy components was observed. In this stage liquid-like NMR signals appeared and rapidly increased in intensity after a characteristic temperature T_f(~1.1T_g). The signals associated with the glassy components completely disappeared at another characteristic temperature T_c(~1.2T_g).     

Theoretical study on the isomerization and tautomerism in barbituric acid

Isomerization and tautomerism of 16 isomers of barbituric acid (BA) were studied at the MP2 and B3LYP levels of theory. Activation energies (E _a), imaginary frequencies (υ), and Gibbs free energies (ΔG ^#) of the amine-imine and keto-enol tautomerisms and O–H internal rotations were calculated. The activation energies of amine-imine tautomerisms were in the range of 110–200 kJ/mol and for keto-enol tautomerisms were larger than 200 kJ/mol. The calculated activation energies of internal O–H rotations were smaller than 60 kJ/mol. Effect of micro-hydration on the transition state structures and activation energies of the tautomerisms were also investigated. Water molecule catalyzed the tautomerisms and decreased the activation energies of both the amine-imine and keto-enol tautomerisms about 100–120 kJ/mol.     

Probing the local environments of phosphorus in aluminophosphate-based mesostructured lamellar materials by solid-state NMR spectroscopy

We have characterized a series of mesostructured aluminophosphate (AlPO)-based lamellar materials by several solid-state NMR techniques. In particular, we were able to estimate the average number of Al atoms and identify the nature of other ancillary groups in the second coordination sphere for each P site. Our work has shown that a combination of several dipolar coupling-based (31)P/(27)Al double-resonance techniques such as transfer of population in double-resonance (TRAPDOR), rotational echo double-resonance (REDOR), and heteronuclear correlation spectroscopy (HETCOR) as well as (1)H --> (31)P cross polarization (CP) can provide more detailed structural information regarding the local environments of P and Al atoms in AlPO-based mesostructured materials, which is not readily available from straightforward (31)P and (27)Al magic-angle spinning (MAS) experiments.     

Catalyst-free synthesis of dihydropyridine from barbituric acid in water

An operationally simple, atom-economical, and green procedure has been developed for the synthesis of dihydropyridine derivatives by a simple condensation of barbituric acid, aldehyde, and ammonium acetate in water under catalyst-free conditions. Excellent yields and purity were obtained with only filtration and washing with hot water and ethanol.     

Self-assembled spiral nanoarchitecture and supramolecular chirality in Langmuir-Blodgett films of an achiral amphiphilic barbituric acid

An amphiphilic barbituric acid derivative was found to form stable monolayers showing a clear phase transition at the air/water interface. It is interesting to find that the deposited Langmuir-Blodgett (LB) films of the compound showed circular dichroism (CD) although the molecule itself was achiral. AFM measurements on the transferred one-layer LB film revealed that spiral nanoarchitectures were formed. It was further found that the supramolecular chirality of the LB films was related to symmetry breaking at the interface. Hydrogen bonding and the pi-pi stacking between the neighboring molecules resulted in chiral fibers which formed the spiral structures. To the best of our knowledge, this is the first report on the chirality of the molecular assemblies and spiral nanostructures formed through the air/water interface by achiral molecules.     

Radical polymerization of methyl methacrylate initiated by an enolizable ketone–carbon black system

The polymerization of methyl methacrylate (MMA) initiated by an enolizable ketone (R₁? CO? CH₂? CO? R₂)-carbon black system was investigated. Although enolizable ketone itself could not do so, the polymerization of MMA was initiated by enolizable ketone in the presence of carbon black. In addition, a chloranil-enolizable ketone system was able to initiate the polymerization of MMA. It was found that the enol form of the ketone and quinonic oxygen groups on the carbon black surface played an important role in the initiation system; namely, it was considered that the polymerization was begun by the ketone radical (R₁? CO? CH? CO? R₂) formed by a one-electron transfer reaction from enolate ion to quinonic oxygen groups. The effect of solvent on the process was also studied. The rate of the polymerization increased, depending on the solvent used, in the following order: benzene < 1,4-dioxane < dimethyl sulfoxide < N,N-dimethylformamide < N-methyl-2-pyrrolidone. Furthermore, it became apparent that during the polymerization poly(methyl methacrylate) was grafted onto the carbon black surface (grafting ratio was ca. 40% when benzene was used as solvent) and the carbon black obtained gave a stable colloidal dispersion in organic solvent.     

Reactivity and molecular recognition: amine methylation by an introverted ester

We report a host molecule with an inwardly directed methyl ester and its reaction with a series of tertiary amines. The reaction product is a complex of the host carboxylate with a guest quaternary ammonium salt. The rate of the reaction is highly dependent on the suitability of the amine to occupy the host cavity and the intrinsic reactivity of the resulting complex. A kinetic study of the reaction of 2-(dimethylamino)ethanol to produce choline gives the activation parameters DeltaH = 25.1 +/- 0.5 kcal mol-1 and DeltaS = 12 +/- 2 cal mol-1 K-1. The complex, once formed, is poised to reach the transition state; a rate acceleration of greater than 2 x 104 fold is estimated when compared with similar reactions having no supramolecular effects.