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1.
The B3LYP/6-31+G(d) molecular geometry optimized structures of 17 five-membered heterocycles were employed together with the gauge including atomic orbitals (GIAO) density functional theory (DFT) method at the B3LYP/6-31+G(d,p), B3LYP/6-311++G(d,p) and B3LYP/6-311+G(2d,p) levels of theory for the calculation of proton and carbon chemicals shifts and coupling constants. The method of geometry optimization for pyrrole (1), N-methylpyrrole (2) and thiophene (7) using the larger 6-311++G(d,p) basis sets at the B3LYP/6-31+G(d,p), B3LYP/6-311++G(d,p), B3LYP/6-31+G(2d,p) and B3LYP/cc-pVTZ levels of theory gave little difference between calculated and experimental values of coupling constants. In general, the (1)H and 13C chemical shifts for all compounds are in good agreement with theoretical calculations using the smaller 6-31 basis set. The values of nJHH(n=3, 4, 5) and rmnJ(CH)(n=1, 2, 3, 4) were predicted well using the larger 6-31+G(d,p) and 6-311++G(d,p) basis sets and at the B3LYP/6-31+G(d,p), B3LYP/6-311++G(d,p), B3LYP/6-31+G(2d,2p) levels of theory. The computed atomic charges [Mülliken; Natural Bond Orbital Analysis (NBO); Merz-Kollman (MK); CHELP and CHELPG] for the B3LYP/6-311++G(d,p) geometry optimized structures of 1-17 were used to explore correlations with the experimental proton and carbon chemical shifts.  相似文献   

2.
The reaction of NO with ClO has been studied theoretically using density-functional and wave function methods (B3LYP and CCSD(T)). Although a barrier for cis and trans additions could be located at the RCCSD(T) and UCCSD(T) levels, no barrier exists at the B3LYP/6-311+G(d) level. Variational transition state theory on a CASPT2(12,12)/ANO-L//B3LYP/6-311+G(d) surface was used to calculate the rate constants for addition. The rate constant for cis addition was faster than that for trans addition (cis:trans 1:0.76 at 298 K). The rate constant data summed for cis and trans addition in the range 200-1000 K were fit to a temperature-dependent rate in the form kdi) = 3.30 x 10(-13)T(0.558) exp(305/T) cm3.molecule(-1).s(-1), which is in good agreement with experiment. When the data are fit to an Arrhenius plot in the range 200-400 K, an activation barrier of -0.35 kcal/mol is obtained. The formation of ClNO2 from ONOCl has a much higher activation enthalpy from the trans isomer compared to the cis isomer. In fact, the preferred decomposition pathway from trans-ONOCl to NO2 + Cl is predicted to go through the cis-ONOCl intermediate. The trans --> cis isomerization rate constant is kiso = 1.92 x 10(13) exp(-4730/T) s(-1) using transition state theory.  相似文献   

3.
The GIAO (Gauge Including Atomic Orbitals) DFT (Density Functional Theory) method is applied at the B3LYP/6-31+G(d,p)//B3LYP/6-31+G(d), B3LYP/6-311++G(d,p)//B3LYP/6-31+G(d), B3LYP/6-311+G (2d,p)//B3LYP/6-31+G(d) and B3LYP/6-311++G(d,p)//B3LYP/6-311++G(d,p) levels of theory for the calculation of proton and carbon chemicals shifts and coupling constants for 25 nitro-substituted five-membered heterocycles. Difference (1D NOE) spectra in combination with long-range gHMBC experiments were used as tools for the structural elucidation of nitro-substituted five-membered heterocycles. The assigned NMR data (chemical shifts and coupling constants) for all compounds were found to be in good agreement with theoretical calculations using the GIAO DFT method. The magnitudes of one-bond (1JCH) and long-range (nJCH, n>1) coupling constants were utilized for unambiguous differentiation between regioisomers of nitro-substituted five-membered heterocycles.  相似文献   

4.
The conformational preferences and prolyl cis-trans isomerization of oxidized and reduced Ac-Cys-Pro-Phe-Cys-NH2 (CPFC peptides) have been carried out using the ab initio HF/6-31+G(d) and hybrid density functional B3LYP/6-311++G(d,p) levels of theory. The most preferred conformations of oxidized and reduced CPFC peptides with the trans prolyl peptide bond have a type-I beta-turn for the Pro-Phe sequence in common. In particular, the transition states for both forms are stabilized by the intramolecular hydrogen bonds between the prolyl nitrogen and the N-H group of the Phe3 residue. The rotational barrier DeltaGct to the cis-to-trans isomerization for the oxidized CPFC peptide is calculated to be 19.37 kcal/mol at the B3LYP/6-311++G(d,p)//HF/6-31+G(d) level of theory, which is lower by 0.88 kcal/mol than that of the reduced CPFC peptide. This may indicate that the rate constant kc-->t of the prolyl cis-to-trans isomerization for the oxidized form is about 4 times larger than that of the reduced form, which is reasonably consistent with the value deduced from NMR experiments. In particular, the increase in vibrational entropy for the transition state of the oxidized form over that of the reduced form contributes to enhance the rate constant for the prolyl cis-to-trans isomerization of the oxidized form.  相似文献   

5.
The minimum energy paths for intramolecular proton transfer between the amino nitrogen and carbonyl oxygen atoms in gaseous protonated glycine were estimated at the Hartree-Fock (HF) and second-order M?ller-Plesset Perturbation (MP2) levels of theory. Potential energy profiles and their associated reactant, transition state, and product species calculated at the MP2/6-31G* level were shown to differ significantly from those obtained at the HF/6-31G* level. Effects of electron correlation and basis functions on the calculated geometries and energies of relevant species were examined at the HF, MP2, MP4, CCSD, and B3LYP levels using the 6-31G*, 6-31G**, 6-31+G**, 6-311+G**, 6-31+G(2d,2p), 6-311+G(3df,2p), cc-pVDZ, aug-cc-pVDZ, and cc-pVTZ basis sets. The HF and MP2 optimized levels with the 6-31G*, 6-31G**, 6-31+G**, and 6-311+G** bases were used to calculate the thermodynamic and kinetic properties of the proton transfer reaction at 298.15 K and 1 atm, which include enthalpy, entropy, Gibbs free energy, equilibrium constant, potential energy barriers, tunneling transmission coefficients, and rate constants. Results indicate that the proton in a carbonyl O-protonated glycine undergoes a rapid migration to the amino nitrogen atom, while the reverse process is extremely unfavorable. The objective of this work is to develop practical theoretical procedures for studying proton transfer reactions in amino acids and peptides and to assemble physical data from these model calculations for future references.  相似文献   

6.
A dual-level direct dynamics study has been carried out for the two hydrogen abstraction reactions CF(3)CHCl(2)+Cl and CF(3)CHFCl+Cl. The geometries and frequencies of the stationary points are optimized at the BHLYP/6-311G(d,p), B3LYP/6-311G(d,p), and MP2/6-31G(d) levels, respectively, with single-point calculations for energy at the BHLYP/6-311++G(3df,2p), G3(MP2), and QCISD(T)/6-311G(d,p) levels. The enthalpies of formation for the species CF(3)CHCl(2), CF(3)CHFCl, CF(3)CCl(2), and CF(3)CFCl are evaluated at higher levels. With the information of the potential energy surface at BHLYP/6-311++G(3df,2p)//6-311G(d,p) level, we employ canonical variational transition-state theory with small-curvature tunneling correction to calculate the rate constants. The agreement between theoretical and experimental rate constants is good in the measured temperature range 276-382 K. The effect of fluorine substitution on reactivity of the C-H bond is discussed.  相似文献   

7.
使用密度泛函理论B3LYP方法和6-31G(d,p)、6-31+G(d,p)、6-311G(d,p)及6-311+G(d,p)基组,分别对2-C5H10+和1-C5H10+的各种构象进行了几何构型优化,并用B3LYP/6-311G(d,p)进行了频率分析计算.计算预言1-C5H10+具有非平面构型,与以往报导的从头算计算结论相反.在两个自由基阳离子的各种构象的B3LYP几何构型上,进行了B3LYP和UMP2(full)方法的超精细偶合常数计算,得到了比以往更好的结果.  相似文献   

8.
The reaction of NCN with O is relevant to the formation of prompt NO according to the new mechanism, CH+N2-->cyclic-C(H)NN- -->HNCN-->H+NCN. The reaction has been investigated by ab initio molecular orbital and transition state theory calculations. The mechanisms for formation of possible product channels involved in the singlet and triplet potential energy surfaces have been predicted at the highest level of the modified GAUSSIAN-2 (G2M) method, G2M (CC1). The barrierless association/dissociation processes on the singlet surface were also examined with the third-order Rayleigh-Schr?dinger perturbation (CASPT3) and the multireference configuration interaction methods including Davidson's correction for higher excitations (MRCI+Q) at the CASPT3(6,6)/6-311+G(3df)//UB3LYP/6-311G(d) and MRCI+Q(6,6)/6-311+G(3df)//UB3LYP/6-311G(d) levels. The rate constants for the low-energy channels producing CO+N2, CN+NO, and N(4S)+NCO have been calculated in the temperature range of 200-3000 K. The results show that the formation of CN+NO is dominant and its branching ratio is over 99% in the whole temperature range; no pressure dependence was noted at pressures below 100 atm. The total rate constant can be expressed by: kt=4.23x10(-11) T0.15 exp(17/T) cm3 molecule(-1) s(-1).  相似文献   

9.
采用密度泛函方法(B3LYP)在6-311+G(d,p)基组水平上研究了CH3CH2S自由基H迁移异构化以及裂解反应的微观动力学机理. 在QCISD(T)/6-311++G(d,p)//B3LYP/6-311+G(d,p)+ZPE水平上进行了单点能校正. 利用经典过渡态理论(TST)与变分过渡态理论(CVT)分别计算了在200~2000 K温度区间内的速率常数kTST和kCVT, 同时获得了经小曲率隧道效应模型(SCT)校正后的速率常数kCVT/SCT. 研究结果表明, CH3CH2S自由基1,2-H迁移、1,3-H迁移、C—C键断裂和β-C—H键断裂反应的势垒ΔE≠分别为149.74, 144.34, 168.79和198.29 kJ/mol. 当温度低于800 K时, 主要发生1,2-H迁移反应, 高于1800 K时, 主要表现为C—C键断裂反应, 在1300—1800 K范围内, 1,3-H迁移反应是优势通道, 在计算的整个温度段内, β-C—H键断裂反应可以忽略.  相似文献   

10.
An extensive quantum chemical study of the potential energy surface (PES) for all possible isomerization and dissociation reactions of CH2CO with NCO is reported at the DFT (B3LYP/6-311++G(d,p)) and CCSD(T)/cc-pVDZ//B3LYP/6-311++G(d,p) levels of theory. For the CH2CO+NCO reaction, the formation of CO+CH2NCO via an addition–elimination mechanism is the dominant channel on the doublet surface. While the formation of CO+CH2OCN via bimolecular substitution reaction is in the secondary. Meanwhile, the isomerization and dissociation reactions of the products, CH2NCO and CH2OCN, also have been investigated using the same theoretical approach. It can be concluded that these reaction channels are not feasible kinetically at low or fairly high temperatures. On the basis of the ab initio data, the total rate constants for the CH2CO+NCO reaction in the T=296–560 K range have been computed using conventional transition state theory with Wigner tunneling correction and fitted by a rate expression as k=2.14×10−12 (cm3 molecule−1 s−1) exp(654.29/T). The calculated total rate constants with Wigner tunneling correction for the CH2CO+NCO reaction are in good agreement with the available experimental values.  相似文献   

11.
A reliable computational method for the prediction of organoselenium geometries and bond dissociation energies (BDEs) has been determined on the basis of the performance of density functional theory (DFT: B3LYP and B3PW91) and ab initio molecular orbital procedures (Hartree-Fock (HF)) in conjunction with various Pople basis sets including (but not limited to) the 6-31G(d), 6-31G(d,p), 6-311G(d), 6-311G(d,p), 6-311G(2df,p), and 6-311G(3df,3pd) sets. Predicted geometries and BDEs are compared with available experimental data and quadratic configuration interaction including single and double substitutions (QCISD) results. The B3PW91/6-311G(2df,p) level of theory is recommended for the prediction of the geometries and energetics of organoselenium compounds.  相似文献   

12.
A theoretical quantum chemical study of the intramolecular hydrogen bonding interactions in 8-mercaptoquinoline has been carried out. Special attention has been paid to the rotation of S-H bond and intramolecular proton-transfer reactions. Therewith, the B3LYP/6-311++G(d,p), B3LYP/6-31+G(2d,2p), MPW1K/6-311++G(d,p), MPW1K/6-31+G(2d,2p), BH&HLYP/6-311++G(d,p), and G96LYP/6-311++G(d,p) methods have been used. By means of the Onsager and PCM reaction field methods, the effects of solvent on hydrogen-bond energies, conformational equilibria, rotational barriers, and tautomerism in aqueous solution have been studied. These simulations were done at the MPW1K/6-311++G(d,p) and B3LYP/6-311++G(d,p) levels. Natural-bond orbital analysis has been performed to study the intramolecular hydrogen bond (IHB) in the gaseous phase and in aqueous medium. The stability of forms under consideration in solution does not coincide with that in the gaseous phase, underlining a great importance of the electrostatic influence of solvent. Double-proton transfer in the prototropic tautomerization of 8-mercaptoquinoline, one water molecule complex in the gaseous phase and in solution, has been systematically studied. The double-proton transfer occurs concertedly and synchronously. The water-assisted tautomerization is kinetically less, but thermodynamically more favorable, compared to that of the single-proton transfer. As in the case with single-proton transfer, for water-assisted reaction, the tautomerization energies and barrier heights decrease with the increase in dielectric constant, which implies faster and more complete tautomerization of 8-mercaptoquinoline in a polar solvent.  相似文献   

13.
The multidimensional Conformational Potential Energy Hypersurface (PEHS) of cyclotrisarcosyl was comprehensively investigated at the DFT (B3LYP/6-31G(d), B3LYP/6-31G(d,p) and B3LYP/6-311++G(d,p)), levels of theory. The equilibrium structures, their relative stability, and the Transition State (TS) structures involved in the conformational interconversion pathways were analyzed. Aug-cc-pVTZ//B3LYP/6-311++G(d,p) and MP2/6-31G(d)//B3LYP/6-311++G(d,p) single point calculations predict a symmetric cis-cis-cis crown conformation as the energetically preferred form for this compound, which is in agreement with the experimental data. The conformational interconversion between the global minimum and the twist form requires 20.88 kcal mol-1 at the MP2/6-31G(d)//B3LYP/6-311++G(d,p) level of theory. Our results allow us to form a concise idea about the internal intricacies of the PEHSs of this cyclic tripeptide, describing the conformations as well as the conformational interconversion processes in this hypersurface. In addition, a comparative analysis between the conformational behaviors of cyclotrisarcosyl with that previously reported for cyclotriglycine was carried out  相似文献   

14.
The rate coefficient of the gas-phase reaction C(2)H + H(2)O-->products has been experimentally determined over the temperature range 500-825 K using a pulsed laser photolysis-chemiluminescence (PLP-CL) technique. Ethynyl radicals (C(2)H) were generated by pulsed 193 nm photolysis of C(2)H(2) in the presence of H(2)O vapor and buffer gas N(2) at 15 Torr. The relative concentration of C(2)H radicals was monitored as a function of time using a CH* chemiluminescence method. The rate constant determinations for C(2)H + H(2)O were k(1)(550 K) = (2.3 +/- 1.3) x 10(-13) cm(3) s(-1), k(1)(770 K) =(7.2 +/- 1.4) x 10(-13) cm(3) s(-1), and k(1)(825 K) = (7.7 +/- 1.5) x 10(-13) cm(3) s(-1). The error in the only other measurement of this rate constant is also discussed. We have also characterized the reaction theoretically using quantum chemical computations. The relevant portion of the potential energy surface of C(2)H(3)O in its doublet electronic ground state has been investigated using density functional theory B3LYP6-311 + + G(3df,2p) and molecular orbital computations at the unrestricted coupled-cluster level of theory that incorporates all single and double excitations plus perturbative corrections for the triple excitations, along with the 6-311 + + G(3df,2p) basis set [(U)CCSD(T)6-311 + + G(3df,2p)] and using UCCSD(T)6-31G(d,p) optimized geometries. Five isomers, six dissociation products, and sixteen transition structures were characterized. The results confirm that the hydrogen abstraction producing C(2)H(2)+OH is the most facile reaction channel. For this channel, refined computations using (U)CCSD(T)6-311 + + G(3df,2p)(U)CCSD(T)6-311 + + G(d,p) and complete-active-space second-order perturbation theory/complete-active-space self-consistent-field theory (CASPT2/CASSCF) [B. O. Roos, Adv. Chem. Phys. 69, 399 (1987)] using the contracted atomic natural orbitals basis set (ANO-L) [J. Almlof and P. R. Taylor, J. Chem. Phys.86, 4070 (1987)] were performed, yielding zero-point energy-corrected potential energy barriers of 17 kJ mol(-1) and 15 kJ mol(-1), respectively. Transition-state theory rate constant calculations, based on the UCCSD(T) and CASPT2/CASSCF computations that also include H-atom tunneling and a hindered internal rotation, are in perfect agreement with the experimental values. Considering both our experimental and theoretical determinations, the rate constant can best be expressed, in modified Arrhenius form as k(1)(T) = (2.2 +/- 0.1) x 10(-21)T(3.05) exp[-(376 +/- 100)T] cm(3) s(-1) for the range 300-2000 K. Thus, at temperatures above 1500 K, reaction of C(2)H with H(2)O is predicted to be one of the dominant C(2)H reactions in hydrocarbon combustion.  相似文献   

15.
The reaction of CF2(a3B1) with NO(X2Pi) was theoretically investigated using the B3LYP, MP2, CCSD(T), G2M, CASSCF, and CASPT2 quantum chemical methods with various basis sets including 6-31G(d), 6-311G(d), 6-311+G(3df), cc-pVDZ, and cc-pVTZ. In agreement with the experimental kinetic data, the CF2(a3B1)+NO(X2Pi) reaction is found to proceed via a fast, barrier-free combination. This process, occurring on the doublet potential energy surface, leads to the electronically excited adduct F2C-NO(22A'), which readily undergoes a surface hopping to the 12A' electronic surface, with a Landau-Zener transition probability estimated to be close to 90% per C-N vibration. The metastable adduct F2C-NO(12A') can then either spontaneously decompose into CF2(X1A1)+NO(X2Pi) in a direct chemical quenching mechanism or relax to its ground-state equilibrium structure F2CNO(X2A'). The product distribution resulting from the latter, chemically activated intermediate was evaluated by solution of the master equation (ME), under different reaction conditions, using the exact stochastic simulation method; microcanonical rate constants were computed using Rice-Ramsperger-Kassel-Marcus (RRKM) theory, based on the potential energy surfaces (PESs) constructed using both G2M and CASPT2 methods. The RRKM/ME analysis reveals that the hot F2CNO(X2A') rapidly fragments almost exclusively to the same products as above, CF2(X1A1)+NO(X2Pi), which amounts to an indirect chemical quenching mechanism. The reaction on the quartet PES is unlikely to be significant except at very high temperatures. The high crossing probability (up to 90%) between the two "avoided" doublet PESs points out the inherent difficulty in treating chemically activated reactions with fast-moving nuclei within the Born-Oppenheimer approximation.  相似文献   

16.
用密度函数理论B3LYP方法和6-31G(d,p),6-311G(d,p)及6-311+G(d,p)基组,分别对1-C4H^+~8,2-C4H^+~8和C4H^+~10进行了构型优化和频率分析计算,预言1-C4H^+~8具有非平面构型,与以往报道的从头算和密度函数理论计算结果不同。在各自由基阳离子的B3LYP构型上,进行了B3LYP、MP2及MRSDCI方法的超精细偶合常数计算,得到了比以往更好的结果,特别是MP2/B3LYP计算值是至今与实验值符合得最好的理论计算结果。  相似文献   

17.
The inversion and rotation mechanisms for the isomerization of Feringa’s bithioxanthenes existing in two conformations, up/up and up/down, have been calculated at the B3LYP/6-31G(d) and B3LYP/6-311++G(d,p) levels. The inversion mechanism that maintains the double bond nature of the central bond is a classical one but the rotation mechanisms that break the double bond to form a biradical needs to explore the singlet and triplet states. To do this we have removed the four fused phenyl rings of bithioxanthene and calculated at the CASSCF and CASPT2 levels bis(4H-thiopyran) proving that B3LYP calculations yield reasonable results for the rotation barriers.  相似文献   

18.
The mechanisms of the reactions: CH(3)C(O)CH(2)F+OH/Cl-->products (R1/R2) and CH(3)C(O)CF(3)+OH/Cl-->products (R3/R4) are studied over a wide temperature range (200-2000 K) by means of the dual-level direct dynamics method. The optimized geometries and frequencies of the stationary points are calculated at the MP2/cc-pVDZ and B3LYP/6-311G(d,p) levels. The energy profiles of the reactions are then refined with the interpolated single-point-energy method (ISPE) at the BMC-CCSD level. The canonical variational transition-state theory (CVT) with the small-curvature-tunneling (SCT) correction method is used to calculate the rate constants. Using group-balanced isodesmic reactions as working chemical reactions, the standard enthalpies of formation for CH(3)C(O)CH(2)F, CH(3)C(O)CF(3), CH(3)C(O)CHF, CH(2)C(O)CH(2)F, and CH(2)C(O)CF(3) are evaluated at the CCSD(T)/6-311+G(2d,p)//MP2/cc-pVDZ level of theory. The results indicate that the hydrogen abstraction is dominated by removal from the fluoromethyl position rather than from the methyl position.  相似文献   

19.
The potential energy surface, including the geometries and frequencies of the stationary points, of the reaction HFCO + OH is calculated using the MP2 method with 6-31+G(d,p) basis set, which shows that the direct hydrogen abstraction route is the most dominating channel with respect to addition and substitution channels. For the hydrogen abstraction reaction, the single-point energies are refined at the QCISD(T) method with 6-311++G(2df,2pd) basis set. The calculated standard reaction enthalpy and barrier height are -17.1 and 4.9 kcal mol(-1), respectively, at the QCISD(T)/6-311++G(2df,2pd)//MP2/6-31+G(d,p) level of theory. The reaction rate constants within 250-2500 K are calculated by the improved canonical variational transition state theory (ICVT) with small-curvature tunneling (SCT) correction at the QCISD(T)/6-311++G(2df,2pd)//MP2/6-31+G(d,p) level of theory. The fitted three-parameter formula is k = 2.875 x 10(-13) (T/1000)1.85 exp(-325.0/T) cm(3) molecule(-1) s(-1). The results indicate that the calculated ICVT/SCT rate constant is in agreement with the experimental data, and the tunneling effect in the lower temperature range plays an important role in computing the reaction rate constants.  相似文献   

20.
The rate constants of the reactions of HOI molecules with H, OH, O ((3)P), and I ((2)P(3/2)) atoms have been estimated over the temperature range 300-2500 K using four different levels of theory. Geometry optimizations and vibrational frequency calculations are performed using MP2 methods combined with two basis sets (cc-pVTZ and 6-311G(d,p)). Single-point energy calculations are performed with the highly correlated ab initio coupled cluster method in the space of single, double, and triple (pertubatively) electron excitations CCSD(T) using the cc-pVTZ, cc-pVQZ, 6-311+G(3df,2p), and 6-311++G(3df,3pd) basis sets. Reaction enthalpies at 0 K were calculated at the CCSD(T)/cc-pVnZ//MP2/cc-pVTZ (n = T and Q), CCSD(T)/6-311+G(3df,2p)//MP2/6-311G(d,p), and CCSD(T)/6-311++G(3df,3pd)//MP2/6-311G(d,p) levels of theory and compared to the experimental values taken from the literature. Canonical transition-state theory with an Eckart tunneling correction is used to predict the rate constants as a function of temperature. The computational procedure has been used to predict rate constants for H-abstraction elementary reactions because there are actually no literature data to which the calculated rate constants can be directly compared. The final objective is to implement kinetics of gaseous reactions in the ASTEC (accident source term evaluation code) program to improve speciation of fission products, which can be transported along the reactor coolant system (RCS) of a pressurized water reactor (PWR) in the case of a severe accident.  相似文献   

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