Synthesis,characterization, DNA interaction,thermal and in vitro biological activity investigation of some Ni(II)-Isatin bishydrazone complexes

Complexes of the type [Ni (L) (H₂O)] Cl₂.nH₂O, where L = [(pyridine-2-carboxaldhyde)-3-isatin]-bishydrazone (cpish), [(2-acetyl pyridine)-3-isatin]-bishydrazone (apish) and [(2-benzoyl pyridine)-3-isatin]-bishydrazone (bpish) have been synthesized and characterized on the bases of elemental analysis, molar conductance, IR, NMR, electronic spectra and thermal analysis (TGA and DTA). Moreover, the stoichiometry and the formation constants of these complexes have been determined spectrophotometrically. Kinetics and thermodynamic parameters of the thermal decomposition have been computed from the thermal data using Coats and Redfern method, which confirm first-order kinetics. The bioefficacy of the ligands and their complexes have been examined for their in vitro antibacterial and antifungal activity against many types of bacteria and anti fungal cultures, which are common contaminants of the environment in Egypt, and the results indicate that the ligands and their metal complexes possess notable antimicrobial activity. Investigation of their interaction with CT-DNA under physiological conditions, using spectroscopic (UV–visible) and hydrodynamic techniques (viscosity measurements). Binding constant "K _b" obtained from spectroscopic methods revealed significant binding of compounds with DNA via intercalation, Furthermore, free energies of compounds–DNA interactions indicated spontaneity of their binding.     

Synthesis, spectroscopic characterization and DNA nuclease activity of Cu(II) complexes derived from pyrazolone based NSO-donor Schiff base ligands

Two neutral mononuclear Cu(II) complexes have been prepared in EtOH using Schiff bases derived from 4-toluoyl pyrazolone and thiosemicarbazide. Both the ligands have been characterized on the basis of elemental analysis, IR, (1)H NMR, (13)C NMR and mass spectral data. The molecular geometry of one of these ligands has been determined by single crystal X-ray study. It reveals that these ligands exist in amine-one tautomeric form in the solid state. Microanalytical data, Cu-estimation, molar conductivity, magnetic measurements, IR, UV-Visible, FAB-Mass, TG-DTA data and ESR spectral studies were used to confirm the structures of the complexes. Electronic absorption and IR spectra of the complexes suggest a square-planar geometry around the central metal ion. The interaction of complexes with pET30a plasmid DNA was investigated by spectroscopic measurements. Results suggest that the copper complexes bind to DNA via an intercalative mode and can quench the fluorescence intensity of EB bound to DNA. The interaction between the complexes and DNA has also been investigated by agarose gel electrophoresis, interestingly, we found that the copper(II) complexes can cleave circular plasmid DNA to nicked and linear forms.     

Visualization of large elongated DNA molecules

Long and linear DNA molecules are the mainstream single‐molecule analytes for a variety of biochemical analysis within microfluidic devices, including functionalized surfaces and nanostructures. However, for biochemical analysis, large DNA molecules have to be unraveled, elongated, and visualized to obtain biochemical and genomic information. To date, elongated DNA molecules have been exploited in the development of a number of genome analysis systems as well as for the study of polymer physics due to the advantage of direct visualization of single DNA molecule. Moreover, each single DNA molecule provides individual information, which makes it useful for stochastic event analysis. Therefore, numerous studies of enzymatic random motions have been performed on a large elongated DNA molecule. In this review, we introduce mechanisms to elongate DNA molecules using microfluidics and nanostructures in the beginning. Secondly, we discuss how elongated DNA molecules have been utilized to obtain biochemical and genomic information by direct visualization of DNA molecules. Finally, we reviewed the approaches used to study the interaction of proteins and large DNA molecules. Although DNA‐protein interactions have been investigated for many decades, it is noticeable that there have been significant achievements for the last five years. Therefore, we focus mainly on recent developments for monitoring enzymatic activity on large elongated DNA molecules.     

Morindone, an Anthraquinone, Intercalates DNA Sans Toxicity: a Spectroscopic and Molecular Modeling Perspective

For the first time, interaction between non-toxic anthraquinone morindone with both natural and synthetic DNA duplexes has been demonstrated in this paper. Detailed analyses of the binding of morindone with DNA via UV?Cvis, FTIR, and circular dichroism spectroscopies were carried out. In addition, bioinformatics tools have been employed to scrutinize the binding of the dye with DNA in silico. Results represent morindone to be a better binder with a score of ?5.79 compared to EtBr (known mutagenic intercalator) recorded at ?5.02. Further interaction is accentuated by the microscope-assisted evidence of nuclear specific staining of tissues by morindone. The electrophoretic analysis reveals the efficacy endowed within morindone dye in rendering protection to DNA exposed to H₂O₂ damage and thereby conferring it safe to the nucleic acid. As DNA is often the target for majority of anticancer and antibiotic drugs, study on the interaction between molecules like morindone and DNA has relevance and implications in several biological applications including cancer therapy. Thus, we propose that morindone can also be harnessed as a diagnostic probe for DNA structure in addition to DNA-directed therapeutics.     

Synthesis,DNA-binding,cytotoxicity, and cleavage studies of unsymmetrical oxovanadium complexes

An unsymmetrical oxovanadium complex [VO(SAA)(phen)] (1) (SAA?=?salicylidene anthranilic acid, phen?=?phenanthroline) and its derivative [VO(MOSAA)(phen)] (2) (MOSAA?=?2-hydroxy-4-methoxysalicylidene anthranilic) have been synthesized and characterized by elemental analysis, UV-Vis, ES-MS, IR, and ¹H NMR. The interaction of these two complexes with calf thymus DNA (CT-DNA) was investigated by absorption titration, fluorescence spectra, viscosity measurements, and thermal denaturation. Their photocleavage reactions with pBR322 supercoiled plasmid DNA were investigated by gel electrophoresis. The cytotoxicity of these two complexes against myeloma cell (Ag8.653) and gliomas cell (U251) have been assessed by MTT assay. The results show that both 1 and 2 bind to CT-DNA in classical intercalation, and the DNA-binding affinity of 1 is larger than that of 2. These complexes enhance the oxidative cleavage of supercoiled pBR322 DNA and both complexes have cytotoxic activities against Ag8.653 and U251 cell lines. Complex 1 has more potent inhibitory effect against the two cell lines than 2.     

Synthesis,characterization and thermal behaviour of solid-state compounds of yttrium and lanthanide benzoates

Solid-state Ln(Bz)₃·H₂O compounds where Ln stands for trivalent yttrium or lanthanides and Bz is benzoate have been synthesized. Simultaneous thermogravimetry-differential thermal analysis (TG-DTA), X-ray powder diffractometry, infrared spectroscopy and chemical analysis were used to characterize and to study the thermal behaviour of these compounds. The results led to information about the composition, dehydration, thermal stability and thermal decomposition of the isolated compounds.     

Synthesis,characterization and thermal behavior on solid tartrates of light trivalent lanthanides

Solid state Ln–L compounds, where Ln stands for light trivalent lanthanides (L–Gd) and L is tartrate, have been synthesized. Thermogravimetry and differential thermal analysis (TG/DTA), differential scanning calorimetry (DSC), X-ray powder diffractometry, elemental analysis and complexometry were used to characterize and to study the thermal behaviour of these compounds. The results led to information about the composition, dehydration and thermal decomposition of the isolated compounds.     

Synthesis, characterisation and thermal behaviour of solid state compounds of 4-methylbenzylidenepyruvate with some bivalent metal ions

Solid state M-4-Me-BP compounds, where M stands for bivalent Mn, Fe, Co, Ni, Cu, Zn, Pb and 4-Me-BP is 4-methylbenzylidenepyruvate, have been synthesized. Simultaneous thermogravimetry-differential thermal analysis (TG-DTA), differential scanning calorimetry (DSC), X-ray powder diffractometry, infrared spectroscopy, elemental analysis, and complexometry were used to characterise and to study the thermal behaviour of these compounds. The results led to information about the composition, dehydration, thermal stability and thermal decomposition of the isolated complexes.     

2-Thieno/Selenopyrano[2,3-b]quinolines: Microwave-Induced One-Pot Synthesis,DNA Binding,and Photocleavage Studies

We have characterized a new class of 2-thieno/2-selenopyrano[2,3-b]quinolin-2-ol (2c/3c) intercalators exhibiting a novel type of DNA binding and photocleavage activity. The dynamic behavior of these compounds with DNA was investigated by absorption spectra (obtained K_b constant for 2c is 3.6 × 10⁶ and for 3c is 2.8 × 10⁵), viscosity, and thermal denaturation studies. Intrinsic binding constants (K_b) have been estimated under a similar set of experimental conditions. An absorption spectral study shows the strong interaction between synthesized 2c, 3c, and base pairs CT-DNA. In addition, the effects of these compounds on DNA cleavage were investigated by photoirradiation at 360 nm and show that the hybrids effectively cleaved double-stranded DNA with UV light of a long wavelength and without any additive.     

Synthesis,characterization and thermal behaviour of solid-state 3-methoxybenzoates of heavy trivalent lanthanides and yttrium(III)

Solid-state Ln(L)₃ compounds, where Ln stands for trivalent Tb, Dy, Ho, Er, Tm, Yb, Lu and Y, and L is 3-methoxybenzoate, have been synthesized. X-ray powder diffractometry, infrared spectroscopy, complexometry and elemental analysis were used to characterize the compounds. In order to study the thermal behaviour of these compounds simultaneous thermogravimetry and differential thermal analysis (TG-DTA) and differential scanning calorimetry (DSC) were used. The results provided information on the composition, dehydration, polymorphic transformation, thermal stability and thermal decomposition of the synthesized compounds.     

Synthesis, structural characterization and catalytic activity of a multifunctional enzyme mimetic oxoperoxovanadium(V) complex

The synthesis and structural characterization of a novel oxoperoxovanadium(V) complex [VO(O(2))(PAH)(phen)] containing the ligands 2-phenylacetohydroxamic acid (PAHH) and 1,10-phenanthroline (phen) has been accomplished. The oxoperoxovanadium(V) complex was found to mimic both vanadate-dependent haloperoxidase (VHPO) activity as well as nuclease activity through effective interaction with DNA. The complex is the first example of a structurally characterized stable oxoperoxovanadium(V) complex with a coordinated bi-dentate hydroximate moiety (-CONHO(-)) from 2-phenylacetohydroximate (PAH). The oxoperoxovanadium(V) complex has been used as catalyst for the peroxidative bromination reaction of some unsaturated alcohols (e.g. 4-pentene-1-ol, 1-octene-3-ol and 9-decene-1-ol) in the presence of H(2)O(2) and KBr. The catalytic products have been characterized by GC-MS analysis and spectrophotometric methods. The DNA binding of this complex has been established with CT DNA whereas the DNA cleavage was demonstrated with plasmid DNA. The interactions of the complex with DNA have been monitored by electronic absorption and fluorescence emission spectroscopy. Viscometric measurements suggest that the compound is a DNA intercalator. The nuclease activity of this complex was confirmed by gel electrophoresis studies.     

Anticancer Drug Modified GCFE,for the Study of Its In‐Vivo Interaction Mechanism

An anticancer drug (Adriamycin) modified Glassy Carbon Fiber Electrode (GCFE) has been prepared to study its interaction with ds‐DNA. The redox reaction of Adriamycin molecules at the chemically modified GCFE helps in understanding the in‐vivo mechanism of action of this anti cancer drug. The modified electrode has been fabricated by the adsorption of Adriamycin on GCFE surface. The results of Differential Pulse Voltammetric (DPV) analysis in acetate buffer of pH 4.5 ± 0.1, showed that the interaction between DNA guanine and adenine bases and electrode surface, is easily detected. A suitable mechanism for the oxidation and reduction of Adriamycin in‐situ intercalated in ds‐DNA immobilized on to the GCFE surface has been explained. The drug‐DNA complex formation at GCFE surface has also been studied. The prepared modified electrode is of utmost relevance because the mechanism of interaction of DNA‐Adriamycin at charged interfaces is parallel to the in‐vivo DNA‐Adriamycin complex reaction, where the nucleic acid is in close contact with charged phospholipid membranes and proteins. The interaction studies of Adriamycin at modified GCFE using DPV method help in understanding the DNA‐Adriamycin reaction mechanism.     

The effect of methylation on the hydrogen-bonding and stacking interaction of nucleic acid bases

Methylated nucleosides play an important role in DNA/RNA function, and may affect republication by interrupting the base-pairing and base-stacking. In order to investigate the effect of methylation on the interaction between nucleic acid bases, this work presents the hydrogen-bonding and stacking interactions between 5-methylcytosine and guanine (G), cytosine (C) and G, 1-methyladenine and thymine (T), as well as adenine and T. Geometry optimization and potential energy surface scan have been performed for the involved complexes by MP2 calculations. The interaction energies, which were corrected for the basis-set superposition error by the full Boys–Bernardi counterpoise correction scheme, were used to evaluate the interaction intensity of these nucleic acid bases. The atoms in molecules theory and natural bond orbital analysis have been performed to study the hydrogen bonds in these complexes. The result shows that the methyl substitute contributes the stability to these complexes because it enhances either the hydrogen bonding or the staking interaction between nucleic acid bases studied.     

Nanomaterial‐based Sensors for the Study of DNA Interaction with Drugs

The interaction of drugs with DNA has been searched thoroughly giving rise to an endless number of findings of undoubted importance, such as a prompt alert to harmful substances, ability to explain most of the biological mechanisms, or provision of important clues in targeted development of novel chemotherapeutics. The existence of some drugs that induce oxidative damage is an increasing point of concern as they can cause cellular death, aging, and are closely related to the development of many diseases. Because of a direct correlation between the response, strength/ nature of the interaction and the pharmaceutical action of DNA‐targeted drugs, the electrochemical analysis is based on the signals of DNA before and after the interaction with the DNA‐targeted drug. Nowadays, nanoscale materials are used extensively for offering fascinating characteristics that can be used in designing new strategies for drug‐DNA interaction detection. This work presents a review of nanomaterials (NMs) for the study of drug‐nucleic acid interaction. We summarize types of drug‐DNA interactions, electroanalytical techniques for evidencing these interactions and quantification of drug and/or DNA monitoring.     

小分子与三链DNA相互作用的研究进展

三链DNA是一种具有众多生理学功能的生物大分子,可用于基因的表达调控,可以作为一种基因疗法的手段控制基因的转录和调节特定基因的表达。 药物小分子与DNA的相互作用对于实现小分子的药理功能并介导相关生理过程都是非常重要的。 在过去的几十年里,科学家们付出了很多努力来研究三链核酸的结合剂,然而报道的比较有效的筛选方法并不多。 本文从提高TC型三链DNA稳定性的策略、三链DNA与结合剂相互作用的研究方法的原理及应用、研究方法的展望三方面展开论述。 主要阐述了平衡透析法、纳米金比色法、多种核酸结构混合变温法、离心超滤法、电喷雾直接进样法、液质联用法和光谱学方法(紫外分光光谱、荧光光谱、圆二色光谱)等几种方法的原理、应用及存在的问题,对小分子配体与三链DNA相互作用的研究具有重要的意义。     

基于水杨酰腙配体的二丁基锡配合物的合成、晶体结构、热稳定性及与DNA相互作用

2-羰基丙酸水杨酰腙与二丁基氧化锡反应, 合成了二丁基锡2-羰基丙酸水杨酰腙配合物, 经元素分析、¹H NMR、¹³C NMR、IR、UV-Vis和X射线单晶衍射等技术手段表征分子结构, 结构分析表明, 该配合物晶体属四方晶系, 锡与配位原子形成变形五角双锥构型的双核有机锡配合物, 分子以Sn₂O₂四元环为中心对称。 热分析结果表明, 在空气氛下, 配合物在103 ℃以下可稳定存在; 研究了配合物在近生理条件下与DNA的相互作用, 用紫外光谱、荧光光谱法及粘度法研究了配合物与鲱鱼精DNA的相互作用, 结果表明, 配合物与鲱鱼精DNA作用方式为插入结合。     

Spectroscopic and In Silico Evaluation of Interaction of DNA with Six Anthraquinone Derivatives

Anthraquinones consist of several hundreds of derivatives that differ in the nature and positions of substituent groups which are known to have several biological activities including antitumor properties. Interaction of molecules with DNA persists to be an extremely vital parameter while endeavouring to formulate therapeutics. In this study, few anthraquinone derivatives such as 1,2-dihydroxyanthraquinone (alizarin), 1,4-dihydroxyanthraquinone (quinizarin), 1,8-dihydroxyanthraquinone (danthron), 1,2,4-trihydroxyanthraquinone (purpurin), 1,4-diaminoanthraquinone, and 1-methylaminoanthraquinone were analyzed for its possible interaction with calf-thymus DNA through spectroscopy and in silico analysis. Our UV spectroscopic results indicate that all selected anthraquinones interact with DNA probably by external binding. Molar extinction coefficient has been calculated for chosen six anthraquinones. FT-IR results suggest that significant shifts of peaks as well as disappearance of certain characteristic peaks were indicators of the plausible interaction going on due to dye-DNA adduct formation. Among the six dyes used, purpurin showed better results and indicates the relatively strong binding affinity with DNA. Our molecular modeling results also show that purpurin has comparatively higher DNA interaction with a score of ?6.18 compared with the ethidium bromide of ?5.02 and intercalate the DNA.     

Synthesis and properties of thioether spacer containing gemini imidazolium surfactants

Twelve new gemini imidazolium surfactants have been synthesized, having dodecyl, tetradecyl, hexadecyl, and octadecyl chain lengths and three different spacers (i.e., -S-(CH(2))(n)-S-), where n = 2, 3, and 4 and their surface properties have been evaluated by surface tension and conductivity methods. The thermal degradation of these new gemini surfactants was determined by thermogravimetric analysis (TGA). These surfactants have low cmc values as compared to other categories of gemini cationic surfactants and exhibit peculiarities at sufficiently low concentration because they were able to form premicellar aggregates over a wide range of concentration below their cmc values. The DNA binding affinity of these gemini surfactants determined by agarose gel electrophoresis and ethidium bromide exclusion experiments established their strong interaction with DNA, thereby protecting it against enzymatic degradation.     

Chromium‐metformin ternary complexes: Thermal,DNA interaction and Docking studies

Three chromium ternary complexes with metformin (met) as a primary ligand and bipyridine (bipy) or ortho‐phenylenediamine (opda) or ortho‐phenanthroline (phen) as secondary ligand were synthesized. These complexes [Cr (Cl)₂(Hmet)(bipy)]‐( 1 ), [Cr (Cl)₂(Hmet)(opda)]‐( 2 ) and [Cr (Cl)₂(Hmet)(phen)]‐( 3 ) were characterized by LC–MS, elemental analysis, molar conductance, thermal analysis, infrared spectroscopy, electronic spectroscopy. The geometrical structures have been found to be octahedral. Degradation pattern of the compounds is shown by thermal studies. The Kinetic parameters‐ energy of activation (E_a), enthalpy (ΔH), entropy (ΔS) and free energy changes (ΔG) have been determined by thermogravimetric data. Coats‐Redfern integration method with thirteen kinetic models was used to calculate the kinetic and thermodynamic parameters for the degradation of all the complexes. The stabilities of the complexes were obtained from their molecular orbital structures from which the quantum chemical parameters were calculated using the HOMO‐LUMO energies. UV–Visible absorption, fluorescence, and viscosity measurements have been conducted to assess the interaction of the complexes with CT DNA. The complexes showed absorption hyperchromism in its UV–Vis spectrum with DNA. The binding constants K_b from UV–Vis absorption studies were 3.1x10⁴, 4.4x10⁴, 5x10⁴ M^?1 for 1, 2, 3 respectively and Stern–Volmer quenching constants (K_sq) from fluorescence studies were 0.137, 0.532, 0.631 for 1, 2, 3 respectively. Finally, viscosity measurements revealed that the binding of the complexes with CT‐DNA could be surface binding, mainly due to groove binding. The activity of complexes towards DNA cleavage decrease in the order of 3 > 2 > 1.The light switching properties of the complexes were also evaluated. The complexes were docked in to B‐DNA sequence, 5′(D*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)‐3′ retrieved from protein data bank (PDB ID: 423D), using Discovery Studio 2.1 software.     

Thermal and crystallization studies of short flax fibre reinforced polypropylene matrix composites: Effect of treatments

The effect of fibre treatments on thermal stability of flax fibre and crystallization of flax fibre/polypropylene composites was investigated. For thermal stability study, flax fibres have been treated using maleic anhydride, maleic anhydride polypropylene copolymer, vinyltrimethoxy silane and alkalization. In order to compare thermal stability of flax fibres thermogravimetry (TG) analysis has been used. Kinetic parameters have been determined by Kissinger method. Results showed that all treatments improved thermal stability of flax fibres. For crystallinity analysis, three different techniques have been used, differential scanning calorimetry analysis (DSC), pressure–volume–temperature (PVT) measurements for analysis of volume shrinkage and polarized optical microscopy (POM). All techniques results showed that addition of flax fibre increased crystallization rate. Besides, depending on fibre surface treatment and crystallization temperature, flax fibre/PP composites can show transcrystallinity.