Controlling the surface chemistry of graphite by engineered self-assembled peptides

The systematic control over surface chemistry is a long-standing challenge in biomedical and nanotechnological applications for graphitic materials. As a novel approach, we utilize graphite-binding dodecapeptides that self-assemble into dense domains to form monolayer-thick long-range-ordered films on graphite. Specifically, the peptides are rationally designed through their amino acid sequences to predictably display hydrophilic and hydrophobic characteristics while maintaining their self-assembly capabilities on the solid substrate. The peptides are observed to maintain a high tolerance for sequence modification, allowing control over surface chemistry via their amino acid sequence. Furthermore, through a single-step coassembly of two differently designed peptides, we predictably and precisely tune the wettability of the resulting functionalized graphite surfaces from 44° to 83°. The modular molecular structures and predictable behavior of short peptides demonstrated here give rise to a novel platform for functionalizing graphitic materials that offers numerous advantages, including noninvasive modification of the substrate, biocompatible processing in an aqueous environment, and simple fusion with other functional biological molecules.     

Organic synthesis in the solid state via hydrogen-bond-driven self-assembly

This Perspective describes how chemists can control intermolecular [2 + 2] photodimerizations in the solid state using small molecules as linear templates. The templates assemble olefins into positions for the reaction via hydrogen-bond-driven self-assembly. We attach functional groups to the olefins that complement hydrogen bond donor and acceptor groups of the templates. The resulting cyclobutane-based products form stereospecifically, quantitatively, and in gram amounts. The templates are used to direct the formation of a [2.2]paracyclophane and ladderanes. The organic solid state is an exciting medium within which to control chemical reactivity since it is possible to synthesize, or construct, molecules that may be, otherwise, unobtainable from solution. The products form with a high degree of stereocontrol provided by a crystal lattice. The critical covalent-bond-forming process also occurs in a solvent-free environment. That molecules are virtually frozen in position in a solid also means that this methodology enables chemists to employ principles of molecular recognition and self-assembly to direct and conduct organic synthesis.     

Self-assembly and stability of double rosette nanostructures with biological functionalities

The syntheses of calix[4]arene dimelamines that are functionalized with alkyl, aminoalkyl, ureido, pyridyl, carbohydrate, amino acid and peptide functionalities, and their self-assembly with barbituric acid or cyanuric acid derivatives into well-defined hydrogen-bonded nanostructures are described. The thermodynamic stability of these hydrogen-bonded assemblies was studied by CD spectroscopy in mixtures of CHCl3 and MeOH. The stability of the assemblies depends on several steric factors and the polarity of the functional groups connected to the assembly components.     

Second-order self-organization in coordination-driven self-assembly: exploring the limits of self-selection

Self-organization during the self-assembly of a series of functionalized bispyridyl organic donors with complementary di-Pt(II) acceptors into supramolecular rhomboids and rectangles is explored. The connectivity and location of functional groups on the organic donors ensures that they do not interfere sterically or electronically with their respective binding sites. Carefully controlled reaction conditions are employed so that the only means of self-organization during self-assembly is through "second-order" effects arising from the distal functional groups themselves. With the selection of functionalized systems studied, the extent of second-order self-organization varies from essentially zero to quite pronounced.     

Effect of C-terminal modification on the self-assembly and hydrogelation of fluorinated Fmoc-Phe derivatives

The development of hydrogels resulting from the self-assembly of low molecular weight (LMW) hydrogelators is a rapidly expanding area of study. Fluorenylmethoxycarbonyl (Fmoc) protected aromatic amino acids derived from phenylalanine (Phe) have been shown to be highly effective LMW hydrogelators. It has been found that side chain functionalization of Fmoc-Phe exerts a significant effect on the self-assembly and hydrogelation behavior of these molecules; fluorinated derivatives, including pentafluorophenylalanine (F(5)-Phe) and 3-F-phenylalanine (3-F-Phe), spontaneously self-assemble into fibrils that form a hydrogel network upon dissolution into water. In this study, Fmoc-F(5)-Phe-OH and Fmoc-3-F-Phe-OH were used to characterize the role of the C-terminal carboxylic acid on the self-assembly and hydrogelation of these derivatives. The C-terminal carboxylic acid moieties of Fmoc-F(5)-Phe-OH and Fmoc-3-F-Phe-OH were converted to C-terminal amide and methyl ester groups in order to perturb the hydrophobicity and hydrogen bond capacity of the C-terminus. Self-assembly and hydrogelation of these derivatives was investigated in comparison to the parent carboxylic acid compounds at neutral and acidic pH. It was found that hydrogelation of the C-terminal acids was highly sensitive to solvent pH, which influences the charge state of the terminal group. Rigid hydrogels form at pH 3.5, but at pH 7 hydrogel rigidity is dramatically weakened. C-terminal esters self-assembled into fibrils only slowly and failed to form hydrogels due to the higher hydrophobicity of these derivatives. C-terminal amide derivatives assembled much more rapidly than the parent carboxylic acids at both acidic and neutral pH, but the resultant hydrogels were unstable to shear stress as a function of the lower water solubility of the amide functionality. Co-assembly of acid and amide functionalized monomers was also explored in order to characterize the properties of hybrid hydrogels; these gels were rigid in unbuffered water but significantly weaker in phosphate buffered saline. These results highlight the complex nature of monomer/solvent interactions and their ultimate influence on self-assembly and hydrogelation, and provide insight that will facilitate the development of optimal amino acid LMW hydrogelators for gelation of complex buffered media.     

Water-soluble molecular capsules: self-assembly and binding properties

The self-assembly and characterization of water-soluble calix[4]arene-based molecular capsules (12) is reported. The assemblies are the result of ionic interactions between negatively charged calix[4]arenes 1 a and 1 b, functionalized at the upper rim with amino acid moieties, and a positively charged tetraamidiniumcalix[4]arene 2. The formation of the molecular capsules is studied by (1)H NMR spectroscopy, ESI mass spectrometry (ESI-MS), and isothermal titration calorimetry (ITC). A molecular docking protocol was used to identify potential guest molecules for the self-assembled capsule 1 a2. Experimental guest encapsulation studies indicate that capsule 1 a2 is an effective host for both charged (N-methylquinuclidinium cation) and neutral molecules (6-amino-2-methylquinoline) in water.     

A general method for the synthesis of nanostructured large-surface-area materials through the self-assembly of functionalized nanoparticles

A general synthetic method for the preparation of nanostructured materials with large surface area was developed by using nanoparticle building blocks. The preparation route involves the self-assembly of functionalized nanoparticles in a liquid-crystal phase. These nanoparticles are functionalized by using difunctional amino acid species to provide suitable interactions with the template. Optimum interactions for self-assembly of the nanoparticles in the liquid-crystal phase were achieved with one -NH2 group anchored to the nanoparticle surface per 25 A(2). To maximize the surface area of these materials, the wall thicknesses are adjusted so that they are composed of a monolayer of nanoparticles. To form such materials, numerous parameters have to be controlled such as the relative volume fraction of the nanoparticles and the template and size matching between the hydrophilic component of the copolymer and nanoparticles. The surface functionalization renders our synthetic route independent of the nanoparticles and allows us to prepare a variety of nanostructured composite materials that consist of a juxtaposition of different discrete oxide nanoparticles. Examples of such materials include CeO2, ZrO2, and CeO2-Al(OH)3 composites.     

Influence of Substituents and Functional Groups on the Surface Composition of Ionic Liquids

We have performed a systematic study addressing the surface behavior of a variety of functionalized and non‐functionalized ionic liquids (ILs). From angle‐resolved X‐ray photoelectron spectroscopy, detailed conclusions on the surface enrichment of the functional groups and the molecular orientation of the cations and anions is derived. The systems include imidazolium‐based ILs methylated at the C2 position, a phenyl‐functionalized IL, an alkoxysilane‐functionalized IL, halo‐functionalized ILs, thioether‐functionalized ILs, and amine‐functionalized ILs. The results are compared with the results for corresponding non‐functionalized ILs where available. Generally, enrichment of the functional group at the surface is only observed for systems that have very weak interaction between the functional group and the ionic head groups.     

Self-assembly of carboxylic substituted PTM radicals: From weak ferromagnetic interactions to robust porous magnets

An overview of the work that have been developed over the last six years in our group on the use of polychlorotriphenylmetyl radicals (PTM) functionalized by carboxylic groups to access to purely organic/molecular magnetic materials is reported. From the seminal work on the monocarboxylic PTM (Section 2), of great importance to determine both the ability of these molecules to form intermolecular H-bonds and the nature of the intermolecular interactions mediated through the resulting supramolecular motifs, we will move to the self-assembly of PTM radicals functionalized with two and three carboxylic groups (Section 3). In those cases, the self-assembly of the paramagnetic units yield robust and porous magnetic structures, associating in some cases magnetic ordering to the latest remarkable characteristics. The last part of the review will present the latest results obtained with the idea to increase both the structural and magnetic dimensionality in purely organic PTM-based materials using a PTM radical functionalized by six carboxylic groups (Section 4). New trends and challenges for this research line, concerning the design and synthesis of new PTM radicals, as well as the obtaining of PTM based sensors or multifunctional materials will be presented in the concluding section (Section 5).     

Synthesis of isocyanate-based brush block copolymers and their rapid self-assembly to infrared-reflecting photonic crystals

The synthesis of rigid-rod, helical isocyanate-based macromonomers was achieved through the polymerization of hexyl isocyanate and 4-phenylbutyl isocyanate, initiated by an exo-norbornene functionalized half-titanocene complex. Sequential ruthenium-mediated ring-opening metathesis polymerization of these macromonomers readily afforded well-defined brush block copolymers, with precisely tunable molecular weights ranging from high (1512 kDa) to ultrahigh (7119 kDa), while maintaining narrow molecular weight distributions (PDI = 1.08-1.39). The self-assembly of these brush block copolymers to solid thin-films and their photonic properties were investigated. Due to the rigid architecture of these novel polymeric materials, they rapidly self-assemble through simple controlled evaporation to photonic crystal materials that reflect light from the ultra-violet, through the visible, to the near-infrared. The wavelength of reflectance is linearly related to the brush block copolymer molecular weight, allowing for predictable tuning of the band gap through synthetic control of the polymer molecular weight. A combination of scanning electron microscopy and optical modeling was employed to explain the origin of reflectivity.     

Functionalization, self-assembly, and photoswitching quenching for azobenzene derivatives adsorbed on Au(111)

We have used scanning tunneling microscopy to investigate the structure and photoswitching behavior of azobenzene molecules functionalized with bulky spacer groups and adsorbed onto Au(111). We find that positioning tert-butyl "legs" in a canted arrangement on the azobenzene phenyl rings quenches photoisomerizability of the molecule on Au(111). Addition of cyano groups at the para positions changes the molecular self-assembly significantly, but does not alter the quenched photoisomerizability. This behavior likely arises from a combination of molecule-surface interactions, molecule-molecule interactions, and alteration of azobenzene electronic structure resulting from the position-specific addition of tert-butyl groups.     

Self-assembly of organic molecules at metal surfaces

Self-assembly represents a promising strategy for surface functionalisation as well as creating nanostructures with well-controlled, tailor-made properties and functionality. Molecular self-assembly at solid surfaces is governed by the subtle interplay between molecule–molecule and molecule–substrate interactions that can be tuned by varying molecular building blocks, surface chemistry and structure as well as substrate temperature.In this review, basic principles behind molecular self-assembly of organic molecules on metal surfaces will be discussed. Controlling these formation principles allows for creating a wide variety of different molecular surface structures ranging from well-defined clusters, quasi one-dimensional rows to ordered, two-dimensional overlayers. An impressive number of studies exist, demonstrating the ability of molecular self-assembly to create these different structural motifs in a predictable manner by tuning the molecular building blocks as well as the metallic substrate.Here, the multitude of different surface structures of the natural amino acid cysteine on two different gold surfaces observed with scanning tunnelling microscopy will be reviewed. Cysteine on Au(110)-(1×2) represents a model system illustrating the formation of all the above mentioned structural motifs without changing the molecular building blocks or the substrate surface. The only parameters in this system are substrate temperature and molecular coverage, controlling both the molecular adsorption state (physisorption versus chemisorption) and molecular surface mobility. By tuning the adsorption state and the molecular mobility, distinctly different molecular structures are formed, exemplifying the variety of structural motifs that can be achieved by molecular self-assembly.     

高度有序介孔氧化硅材料SBA-15：高浓度氨基官能化及氨基及氨基团的可利用性

采用简单的方法合成高浓度氨基修饰的高度有序氧化硅材料并深入研究氨基官能化材料的孔结构以及氨基的存在状态和可利用性。结果表明,氨基基团共价连接到SBA-15的孔表面,即使初始合成体系中的APTES（氨丙基三乙氧基硅烷）浓度高达30mol%时材料依然保持高度的有序性。合成体系中APTES浓度为20％的样品还保持良好的介孔结构,比表面积为680 m²·g^-1,孔容为0.89 cm³·g^-1,此介孔结构中的氨基官能团对镍离子表现出很强的亲和力,Ni²⁺的吸附量高达1.88 mmol·g^-1,相比之下未官能化的SBA-15对Ni²⁺没有吸附作用。当初始合成体系中APTES的浓度进一步增大到30％时,修饰到介孔氧化硅材料的氨基含量也随之增大,但由于材料的孔隙度急剧降低,这些氨基的可利用性也降低。     

Binding of small guest molecules to multivalent receptors

The complexation of phenol derivatives, aromatic carboxylic acids, and n-octylgalactopyranoside by hydrogen-bonded exo-receptors is described. The receptors are formed by self-assembly of differently functionalized calix[4]arene dimelamines with 5,5-diethyl barbiturate or butyl cyanurate. The multivalent complementary recognition site of the receptors is used very efficiently to complex multiple guests. A 1:6 binding mode was observed for phenol derivatives forming single hydrogen bonds with all six recognition sites of an ureido functionalized receptor assembly, while 1:3 complexation was observed for phenol derivatives which form two hydrogen bonds with two different ureido recognition sites of the same receptor. Aromatic carboxylic acids are complexed in a 1:6 ratio by receptors having six amino recognition sites. The complexation of n-octylgalactopyranoside by Gly-L-Ser functionalized receptors is also described, indicating that it is possible to use small peptidic fragments to complex biologically important molecules.     

Preparation of Amino-functionalized Multiwall Carbon Nanotube/Gold Nanoparticle Composites

Multiwall carbon nanotubes (MWNT) were modified orderly with carboxyl groups and amino groups. The MWNT/gold nanoparticle composites were formed when the amino‐functionalized MWNT was interacted with gold colloids. The functionalized MWNT was characterized using Fourier transform infrared spectroscopy and X‐ray photoelectron spectroscopy. The amino‐functionalized MWNT allows further attaching gold nanoparticles through electrostatic interaction between the negatively charged gold nanoparticles and amino groups on the surface of the MWNT. The composite of gold nanoprticles and amino‐functionalized MWNT was characterized by transmission electron microscopy. This method decorating carbon nanotubes can be used to identify the location of functional groups, i.e. defect sites on carbon nanotubes.     

Self-assembled morphologies of monotethered polyhedral oligomeric silsesquioxane nanocubes from computer simulation

Self-assembly of functionalized nanoscale building blocks is a promising strategy for "bottom-up" materials design. Recent experiments have demonstrated that the self-assembly of polyhedral oligomeric silsesquioxane (POSS) "nanocubes" functionalized with organic tethers can be utilized to synthesize novel materials with highly ordered, complex nanostructures. We have performed molecular simulations for a simplified model of monotethered POSS nanocubes to investigate systematically how the parameters that control the assembly process and the resulting equilibrium structures, including concentration, temperature, tether lengths, and solvent conditions, can be manipulated to achieve useful structures via self-assembly. We report conventional lamellar and cylindrical structures that are typically found in block copolymer and surfactant systems, including a thermotropic order-order transition, but with interesting stabilization of the lamellar phase caused by the bulkiness and cubic geometry of the POSS nanocubes.     

Synthesis of mesostructured silica from monoalkyl-substituted double five-ring units

A mesostructured silica-based material was synthesized by self-assembly of a novel amphiphilic molecule consisting of a well-defined siloxane head with a double five-ring (D5R) structure and a hydrophobic alkyl tail. A precursor functionalized with ethoxy groups, C₂₂H₄₅Si₁₀O₁₅(OEt)₉ (1), was hydrolyzed under an acidic condition with the retention of the D5R units, leading to the formation of two-dimensional (2D) hexagonal phase by evaporation-induced self-assembly of amphiphilic hydrolyzed molecules. Solid-state ²⁹Si MAS NMR analysis of the resulting hybrid solid confirmed that the D5R units were cross-linked to form siloxane networks. Calcination of this hybrid solid gave mesoporous silica with high BET surface area (740 m² g⁻¹). These results expand the design possibility of silica-based materials at both molecular- and meso-scales, leading to the bottom up synthesis of hierarchically ordered materials.     

Controlled self-assembly of alkylated-π compounds for soft materials — Towards optical and optoelectronic applications

Organic and polymeric molecules based on π-conjugated units represent an important class of components for optical and optoelectronic functionalized soft materials. Inspired by the innovative molecular design made by synthetic chemists, new functions and applications of π-conjugated molecules are continuously emerging. However, a challenge that remains is to soften these molecules. Alkylation is a commonly employed synthetic strategy to achieve functionalization in order to improve processability, i.e., solubility in volatile solvents, for better utilization in the rapidly-developing field of organic electronics. In addition it is recognized as a powerful strategy to tune the interaction among the π-conjugated moieties. In a different interpretation of alkylation, alkylated-π compounds can be viewed as a class of hydrophobic amphiphiles, since the rigid π-conjugated moiety and flexible alkyl chains are intrinsically immiscible. Recent studies have shown that such compounds can form a variety of self-organized solid and thermotropic liquid crystalline structures as well as nonassembled liquid forms depending upon the position, number and kinds of attached alkyl chains. Here, we present a brief overview of recent developments of alkylated-π chemistry, with an emphasis on the relationships between molecular design, self-assembly behavior and applications in optical and optoelectronic devices. We hope this review can serve as a guide and reference for people working in different research areas, including self-assembly and colloid sciences, synthetic and materials chemistry was well as organic electronics.     

In situ fabrication of three-dimensional chemical patterns in fused silica separation capillaries with polymerized phospholipids

We report a new molecular approach for in situ generation of micron scale, chemically and biochemically functionalized patterns inside three-dimensional, completely enclosed fluidic channels. The formation of chemical patterns is based upon a combination of lipid bilayer self-assembly and UV photopolymerization of photoreactive, cross-linkable phospholipids. Using this approach, we have functionalized capillaries of varying inner diameters with a range of chemistries useful for protein and peptide immobilization. Here, we demonstrate the ability to produce small molecule and protein-based chemical patterns.     

Programmed hyperhelical supramolecular assembly of nickel phthalocyanine bearing enantiopure 1-(p-tolyl)ethylaminocarbonyl groups

The present paper reports uniqueness of a simple, programmed design of disk-shaped homochiral nickel phthalocyanine (Pc) molecules bearing four enantiomerically pure 1-(p-tolyl)ethylaminocarbonyl groups at their peripheral positions, (Pc-(R) and Pc-(S)), and their controlled self-organization into mesoscopic supramolecular helical fibers with a preferential handedness in solution and onto solid surfaces. A combination of four fundamental intermolecular interactions, including quadruple hydrogen bonding, pi-pi stacking, homochiral interactions of the enantiopure bulky aralkyl entities, and noncoordinating nature of nickel ion of the Pc molecules afforded a high thermal stability of the Pc self-assembly in chloroform (CHCl(3)), tetrahydrofuran, and o-dichlorobenzene and onto hydrophilic mica and hydrophobic HOPG surfaces. A higher-ordered helical self-assembly of Pc disks was observed in these solutions (approximately 200 Pc molecules), while the self-assembly was completely dissociated into monomeric species in N,N-dimethylformamide due to a loss of hydrogen-bonding interactions between Pc molecules. Supramolecular chirality in the hierarchical self-assembly of Pc molecules originated from the presence of (R)- or (S)-chiral centers in the peripheral tails, which rotate noncovalently linked molecular building blocks to effectively form the helical architectures. The helical Pc nanofibers dissolved in CHCl(3), estimated to be ca. 70 nm from peak molecular weight obtained by SEC analysis, acts as a building block for higher-order helical fibers (ca. 1 microm) at single molecular level on the solid surfaces, as demonstrated by the dynamic force mode atomic force microscopy. Regardless of hydrophilic and hydrophobic substrates, the interaction between these Pc molecules and the solid surfaces could not affect the morphology of helical assemblies, indicating a unique robustness of these assemblies.