Achiral bent-core salicylaldimine compounds exhibiting dark conglomerate and B2 mesophases: effect of linkage groups and lateral substituents

Four new series of achiral bent-core compounds and two biphenyl derivatives of them have been synthesised and their mesomorphic properties are studied. These mesogens are salicylaldimine derivatives, designed with an aim to study the effect of salicylaldimine group and lateral substituents, viz., ?F and ?Cl at different locations of the molecular structure, on the mesomorphic properties. The newly synthesised compounds are characterised using organic spectroscopy and elemental analysis (EA). The liquid crystalline properties of these compounds are studied using polarising optical microscopy, differential scanning calorimetry, X-ray diffraction and electro-optical studies. They are found to exhibit dark conglomerate (DC) and B₂ mesophases. The DC phases are of sponge and HNC type, and the B₂ is SmC_aP_A in nature. The compounds, wherein the salicylaldimine group is present at the centre of the bent-core, mainly exhibit DC mesophases and when this group is present in one of the wings of the bent-core molecule, the compounds tend to show only a B₂ mesophase, irrespective of the nature of lateral substituents. Many of the DC liquid crystals synthesised here retained the chirality even in their crystalline states which are confirmed by the circular dichroism spectroscopic studies.     

Observation of disordered mesomorphism in three-ring-based highly polar bent-core molecules: design,synthesis and characterisation

Research on low-temperature polar bent-core nematogens having lower molecular weight has gathered appreciable momentum by virtue of their significance in potential applications. However, the lack of availability and easy-to-perform synthesis processes appears to be the bottleneck towards their fabrication and thereby limiting their possible device applications. Hence, we have designed a new class of achiral symmetrical three-ring-based-bent shaped molecules incorporating an imine and ester linkage at the molecular bend with highly polar nitro/cyano terminal moiety exhibiting low-temperature nematic mesmorphism. The occurrence of disordered nematic mesomorphism has been confirmed by optical texture, differential scanning calorimetry scan and X-ray diffraction measurement. Dielectric spectroscopy and electro-optical investigation has also been carried out intending towards the potential applicability of the materials. Density functional theory analyses at the molecular level provide valuable information regarding the formation of the nematic mesophase and various parameters of the molecular spatial arrangement. Polarising optical microscopy study reveals the easy of alignment of these types of polar bent-core materials upon glass surface suitable for liquid-crystal-based sensing applications. Formation of mesophase with such a small bent molecule is rather difficult but we have successfully demonstrated the existence of disordered nematic mesomorphism at relatively low temperature.     

Experimental and theoretical investigations of the molecular structure,the spectroscopic properties and TD-DFT analysis of a new semiconductor hybrid based iron(III)

In this work, a new hybrid material (C₅H₆N₂Cl)₂[FeCl₄].Cl abbreviated (CAP)₂[FeCl₄].Cl was prepared using room temperature slow evaporation technique. The X-ray diffraction analysis revealed that the compound is crystallized in the centrosymmetric space group P2₁/c of the monoclinic system. The crystallographic network consists of an Fe(III) ion located on an inversion center and coordinated by four chlorine, isolated Cl^– and two (CAP)⁺ protonated cations linked by N–H...Cl and C–H...Cl hydrogen bonds to form a zero-dimensional network. Hirshfeld surface analysis was used to analyze intermolecular interactions present in the crystal structure. The vibrational properties were inspected by means of Infra-Red absorption and Raman diffusion spectroscopy techniques. In addition, theoretical calculations based on the DFT/B3LYP/LanL2DZ method and the time-dependent density functional theory (TD–DFT) were performed in order to gain more information and help in the examination of over-all properties of the title compound. Good and interesting experimental findings were presented and good consistency was found with the calculated results.     

Single‐Point Remote Control of Flapping Motion in Clothespin‐Shaped Bimetallic Palladium Complexes Based on the N(sp2)–N(sp3) Interconversion in Amide Functionalities

The synthesis, structure, and flapping motion of clothespin‐shaped binuclear trans‐bis(salicylaldiminato)palladium(II) complexes (anti‐ 1 ) with 4‐azaheptamethylene linkers bearing amide ( a – g ), urethane ( h ), or urea ( i ) functionalities are described in this report. Various 2D ¹H NMR experiments and XRD analyses indicate that the amide‐ and urethane‐linked anti‐ 1 a , b , d – h complexes exist as equilibrated mixtures of major and minor conformers I and II in CDCl₃, whereas the complexes anti‐ 1 c and i were observed as a single species. The mapping of NOESY cross‐peaks between conformers I and II revealed that the equilibration of the major and minor conformers of anti‐ 1 a , b , d – h proceeds by two pathways, namely a nonrotatory flapping motion of the coordinated blades and a nonflapping rotation of C?N bonds, whereas the equilibration of anti‐ 1 c proceeds by simultaneous flapping and rotation motions. Kinetic studies carried out by means of ¹H–¹H EXSY experiments revealed that 1) the ΔG^≠_298K values for the flapping motion are controlled remotely by the steric and electronic effects of the RCON functionalities and 2) the activation parameters for the nonrotatory flapping process are identical to those for the nonflapping peptide rotation in the complexes anti‐ 1 a,b,d – h , which indicates that the present multistep conformational transformation induced by the flapping motion is controlled by the rate‐determining pyramidalization/depyramidalization (i.e., sp²/sp³ interconversion) of the nitrogen atoms of the functionalities. The static and controllable molecular mobility of anti‐ 1 bearing peptide linkers has been discussed by comparison with the dynamic behavior of its analogues anti‐ 2 – 4 with flexible polymethylene linkers.     

Experimental,experimental–theoretical and theoretical estimates of intermolecular interaction energies in η6-[(5-methyl-1,3-oxazolidin-3-yl)benzene]tricarbonylchromium(0)

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DFT-calculated structures based on 1H NMR chemical shifts in solution vs. structures solved by single-crystal X-ray and crystalline-sponge methods: Assessing specific sources of discrepancies

DFT calculations of ¹H NMR chemical shifts, using various functionals and basis sets, the conductor-like polarizable continuum model and discrete solute-solvent hydrogen bond interactions have been used to derive the solution structures of methyl salicylate and methyl 2,5-dihydroxybenzoate. We demonstrate that very good agreement between experimental and computed ¹H NMR chemical shifts can be obtained for various basis sets. The DFT structures in solution were compared with the recently reported X-ray structure, solved by the crystalline-sponge method, of the methyl salicylate and the single-crystal X-ray structure of methyl 2,5-dihydroxybenzoate. It is demonstrated that the information provided by ¹H NMR chemical shifts about the solution structure is significantly more precise than that obtained by the single-crystal X-ray and the crystalline-sponge methods.     

Potassium Salts of 2,5-Bis(trimethylsilyl)-Germolide: Switching between Aromatic and Non-Aromatic States

The reduction of a 1-mesityl-2,5-bis-trimethylsilylchlorogermole 8 with KC₈ is reported. While the reaction with one equivalent of KC₈ gave the dimer with a Ge−Ge bond 10 , excess of KC₈ (four equivalents) resulted in the formation of the potassium salt of the germole dianion, 11 with reductive cleavage of the Ge−C bond. Careful reduction with two equivalents of KC₈ in THF provided the potassium salt of the planar germolide 5 . Its solid-state structure revealed contact ion pairs with the potassium ion η⁵-coordinated to the germacyclopentadienide ring. The molecular structure of the anion indicates a high degree of cyclic electron delocalization, in agreement with results from DFT calculations. Separation of the ion pair by complexation of the potassium ions with 18-crown-6 triggers the isomerization to germolide 6 , which is characterized by a pyramidal coordination sphere of the germanium atom and a localized diene structure. The isomers 5 and 6 represent a rare example for a structurally manifested switch between a non-aromatic and an aromatic state induced by an external stimulus, in this case the complexation of the counter cation.     

Propyne Gas Adsorption in a Cyclic Hexapeptoid: A Combined In Situ XRPD and DFTB Study**

Cyclic peptoids are macrocyclic N-substituted oligoglycines, with remarkable structural, chemical and physical properties. The gas adsorption properties of a permanently porous hexameric cyclopeptoid decorated with four propargyl and two methoxyethyl side chains were monitored by in situ X-ray powder diffraction (XRPD). High-resolution XRPD data together with Rietveld and density functional based tight binding (DFTB) method allowed us to locate propyne guest molecules inside the host channels, even though the powder sample contains more than one phase. We were able to characterize the host-guest interactions, providing useful information on the host recognition sites and discuss host adaptiveness and host–guest chemical affinity in comparison with analogous compounds.     

The Arachno‐Zintl Ion (Sn5Sb3)3− and the Effects of Element Composition on the Structures of Isoelectronic Clusters: Another Facet of the Pseudo‐Element Concept

The pseudo‐element concept, in its most general formulation, states that isoelectronic atoms form equal numbers of bonds. Hence, clusters such as Zintl ions usually retain their structure upon isoelectronic replacement of some or all atoms. Here, a deviation from this common observation is presented, namely the formation of (Sn₅Sb₃)^3? ( 1 ), a rare example of an eight‐vertex Zintl ion, and an unprecedented example of a Zintl ion synthesized by solution means that has an arachno‐type structure according to the Wade–Mingos rules. Three structure‐types of interest for (Sn₅Sb₃)^3? were identified by DFT calculations: one that matched the X‐ray diffraction data, and two that that were reminiscent of fragments of known clusters. A study on the isoelectronic series of clusters, (Sn_xSb_8?x)^2?x (x=0–8), showed that the relative energies of these three isomers vary significantly with composition (independent of electron count) and that each is the global minimum at least once within the series.     

Chlorobis(pentafluoroethyl)phosphane: improved synthesis and molecular structure in the gas phase

(C₂F₅)₂PCl is now accessible through a significantly improved synthesis protocol starting from the technical product (C₂F₅)₃PF₂. (C₂F₅)₃PF₂ was reduced in the first step with NaBH₄ in a solvent‐free reaction at 120 °C. The product, P(C₂F₅)₃, was treated with an excess of an aqueous sodium hydroxide solution to afford the corresponding phosphinite salt Na⁺(C₂F₅)₂PO^? selectively under liberation of pentafluoroethane. Subsequent chlorination with PhPCl₄ resulted in the selective formation of (C₂F₅)₂PCl, which was isolated by fractional condensation in an overall yield of 66 %. The gas electron diffraction (GED) pattern for (C₂F₅)₂PCl was recorded and found to be described by a two‐conformer model. A quantum chemical investigation of the potential‐energy surface revealed the possible existence of many low‐energy conformers, each with a number of low‐frequency vibrational modes and therefore large‐amplitude motions. The conformer calculated to be most stable was also found to be most abundant by GED and comprised 61(5) % of the total. The molecular structure parameters determined by GED were in good agreement with those calculated at the MP2/TZVPP level of theory; the only significant difference was a discrepancy of about 3° in the C‐P‐C angle, which, for the lowest‐energy conformer, was refined to 98.2(4)° and was calculated to be 94.9°.     

Crystal,molecular structure and tautomerism of (5-methyl-1H-[1,2,4]triazol-3-ylsulfanyl)-acetic acid

Molecular structure, relative stability of conformers, and tautomers of (5-methyl-1H-[1,2,4]triazol-3-ylsulfanyl)-acetic acid (MTSA) have been investigated by experimental (X-ray diffraction) and theoretical (B3LYP/aug-cc-pVDZ) methods. It was demonstrated that in the solid state MTSA exists in N1H tautomeric form. This tautomer is not the most stable in gas phase and its stabilization is provided by environment effects.     

Design and Syntheses of Three Novel Carbonate Halides: Cs3Pb2(CO3)3I,KBa2(CO3)2F,and RbBa2(CO3)2F

Three new carbonate halides, Cs₃Pb₂(CO₃)₃I, KBa₂(CO₃)₂F and RbBa₂(CO₃)₂F have been synthesized with hydrothermal and solid‐state methods. Cs₃Pb₂(CO₃)₃I is the first product in the lead carbonate iodides family; KBa₂(CO₃)₂F and RbBa₂(CO₃)₂F are the first two centrosymmetric compounds found in the alkaline–alkaline earth carbonate fluorides family. Cs₃Pb₂(CO₃)₃I crystallizes in a centrosymmetric space group C2/m, and exhibits a two‐ dimensional layered structure which is formed by [Cs₄Pb₄(CO₃)₆I₂]_∞ double‐layers consisting of [Pb₂(CO₃)₃I]_∞ single‐layers bridged by the Cs atoms. KBa₂(CO₃)₂F and RbBa₂(CO₃)₂F, which are isostructural, crystallize in a trigonal crystal system with a centric space group of R featuring a honeycomb‐like framework. First principle calculations indicate that Cs₃Pb₂(CO₃)₃I has a moderate birefringence and explain the difference between the band gaps of the title compounds from electron structures. The effects of cations and halogens on the structures and properties of the title compounds are also discussed.     

Stabilization of the Pentazolate Anion in Three Anhydrous and Metal‐Free Energetic Salts

According to previous reports, metal cations or water molecules are necessary for the stabilization of pentazolate anion (cyclo‐N₅^?) at ambient temperature and pressure. Seeking a new method to stabilize N₅^? is a big challenge. In this work, three anhydrous, metal‐free energetic salts based on cyclo‐N₅^? 3,9‐diamino‐6,7‐dihydro‐5 H‐bis([1,2,4]triazolo)[4,3‐e:3′,4′‐g][1,2,4,5] tetrazepine‐2,10‐diium, N‐carbamoylguanidinium, and oxalohydrazinium (oxahy⁺) pentazolate were synthesized and isolated. All salts were characterized by elemental analysis, IR spectroscopy, ¹H, ¹³C, and (in some cases) ¹⁵N NMR spectroscopy, thermal analysis (TGA and DSC), and single‐crystal XRD analysis. Computational studies associated with heats of formation and detonation performance were performed by using Gaussian 09 and Explo5 programs, respectively. The sensitivity of the salts towards impact and friction was determined, and overall the real N₅ explosives showed promising energetic properties.     

Synthesis,molecular and crystal structures,and characteristic features of electronic structures of salicylamide-based B,Si-containing chelates

The reaction of 4-(2-hydroxybenzoyl)-2,2,6,6-tetramethyl-2,6-disilamorpholine with BF₃Et₂O afforded (O-B)-chelate 4-[2-(difluoroboroxy)benzoyl]-2,2,6,6-tetramethyl-2,6-disilamorpholine. Treatment of the latter with BF₃Et₂O or SOCl₂ gave rise to products of the disilamorpholine ring opening, viz., (O-B) chelate 2-(difluoroboroxy)-N,N-bis(dimethylfluorosilylmethyl)benzamide or 2-(difluoroboroxy)-N, N-bis(dimethylchlorosilylmethyl)benzamide, respectively. The structures of the compounds synthesized were confirmed by X-ray diffraction analysis and ¹H, ¹³C, and ²⁹Si NMR spectroscopy. High-precision X-ray diffraction study and quantum-chemical calculations demonstrated that the coordination OSi bond is absent in the two last-mentioned compounds.Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1846–1853, September, 2004.     

Crystal and molecular structure, hydrogen bond and electrostatic interactions of bis(1-methylisonicotinate)hydrogen perchlorate studied by X-ray diffraction, DFT calculations, FT-IR, Raman and NMR spectroscopes

The crystal structure of bis(1-methylisonicotinate)hydrogen perchlorate, (MIN)₂H·ClO₄, has been studied by X-ray diffraction, DFT calculations, FT-IR, Raman, ¹H and ¹³C NMR spectra. The crystals are monoclinic, space group P2₁/n, with a pair of MIN molecules bridged by a short asymmetrical O·H·O hydrogen bond of 2.461(5) Å. The COO groups are twisted by 80.55° with respect to the plane of the pyridine ring. The anion interacts electrostatically with the positively charged nitrogen atoms of the neighbouring MIN molecules. The most stable conformer of isolated (MIN)₂H·ClO₄ and two homoconjugated cations, (MIN)₂H, have been analyzed by the B3LYP/6-31G(d,p) calculations in order to determine the influence of the anion on the hydrogen bonds in MIN·H·MIN unit. The FT-IR spectrum of the (MIN)₂H·ClO₄ shows a broad and intense absorption in the 1500–400 cm⁻¹ region, typical of short hydrogen bonds. The isotopic ratio, νOHO/νODO, is close to unity, indicating that the hydrogen bond is acentric (pseudo-type A).     

Synthesis, IR-, NMR-, DFT and X-ray study of ferrocenyl heterocycles from thiosemicarbazones. Part 21: Study on ferrocenes

Cyclization reactions of the thiosemicarbazones of formyl- and acetylferrocene and their S-methyl derivatives with DMAD afforded novel ferrocenyl-hydrazono-substituted thiazolones, one-one dimethylthiazole-4,5-dicarboxylate and 1,3-thiazin-4-one, N-ferrocenylimino-pyrimidones/imidazolones, one intermediate β-adduct and via oxidative cyclization, a ferrocenyl-1,2,4-triazole. Ring isomerization of 1,3-thiazin-4-ones to a 1,3-thiazolones was detected. The structure of the new compounds was established by IR and NMR spectroscopy, including HMQC, HMBC and DEPT measurements and supported with GIAO NMR calculations and controlled also synthetically by phase-transfer methylation. For three compounds the stereostructure was also proved by X-ray diffraction.     

Crystallographic and Dynamic Aspects of Solid‐State NMR Calibration Compounds: Towards ab Initio NMR Crystallography

The excellent results of dispersion‐corrected density functional theory (DFT‐D) calculations for static systems have been well established over the past decade. The introduction of dynamics into DFT‐D calculations is a target, especially for the field of molecular NMR crystallography. Four ¹³C ss‐NMR calibration compounds are investigated by single‐crystal X‐ray diffraction, molecular dynamics and DFT‐D calculations. The crystal structure of 3‐methylglutaric acid is reported. The rotator phases of adamantane and hexamethylbenzene at room temperature are successfully reproduced in the molecular dynamics simulations. The calculated ¹³C chemical shifts of these compounds are in excellent agreement with experiment, with a root‐mean‐square deviation of 2.0 ppm. It is confirmed that a combination of classical molecular dynamics and DFT‐D chemical shift calculation improves the accuracy of calculated chemical shifts.