Gas‐phase fragmentation reactions of protonated benzofuran‐ and dihydrobenzofuran‐type neolignans investigated by accurate‐mass electrospray ionization tandem mass spectrometry

We have investigated gas‐phase fragmentation reactions of protonated benzofuran neolignans (BNs) and dihydrobenzofuran neolignans (DBNs) by accurate‐mass electrospray ionization tandem and multiple‐stage (MSⁿ) mass spectrometry combined with thermochemical data estimated by Computational Chemistry. Most of the protonated compounds fragment into product ions B ([M + H–MeOH]⁺), C ([ B –MeOH]⁺), D ([ C –CO]⁺), and E ([ D –CO]⁺) upon collision‐induced dissociation (CID). However, we identified a series of diagnostic ions and associated them with specific structural features. In the case of compounds displaying an acetoxy group at C‐4, product ion C produces diagnostic ions K ([ C –C₂H₂O]⁺), L ([ K –CO]⁺), and P ([ L –CO]⁺). Formation of product ions H ([ D –H₂O]⁺) and M ([ H –CO]⁺) is associated with the hydroxyl group at C‐3 and C‐3′, whereas product ions N ([ D –MeOH]⁺) and O ([ N –MeOH]⁺) indicate a methoxyl group at the same positions. Finally, product ions F ([ A –C₂H₂O]⁺), Q ([ A –C₃H₆O₂]⁺), I ([ A –C₆H₆O]⁺), and J ([ I –MeOH]⁺) for DBNs and product ion G ([ B –C₂H₂O]⁺) for BNs diagnose a saturated bond between C‐7′ and C‐8′. We used these structure‐fragmentation relationships in combination with deuterium exchange experiments, MSⁿ data, and Computational Chemistry to elucidate the gas‐phase fragmentation pathways of these compounds. These results could help to elucidate DBN and BN metabolites in in vivo and in vitro studies on the basis of electrospray ionization ESI‐CID‐MS/MS data only.     

Proton affinity of SO3

Collision-induced dissociation (CID) of the radical cation H₂SO₄⁺ gives the product pairs H₂O⁺+SO₃ and HO+HSO₃⁺ with a 1:3 ratio that is essentially independent of collision energy. Statistical analysis of the two channels indicates that the proton affinity of HO is 3±4 kJ/mol lower than that of SO₃. This can be used to derive PA(SO₃)=591±4 kJ/mol at 0 K and 596±4 kJ/mol at 298 K. Previously, Munson and Smith bracketed the proton affinity as PA(HBr)=584 kJ/mol<PA(SO₃)<PA(CO)=594 kJ/mol. The threshold of 152±16 kJ/mol for formation of H₂O⁺+SO₃ indicates that the barrier to CID is small or nonexistent, in contrast to the substantial barriers to decomposition for H₃SO₄⁺ and H₂SO₄.     

Mechanism of CO loss for protonated 1-indanone and isomeric [C9H9O]+ ions

In order to establish the mechanism of CO loss occurring during metastable decomposition of protonated 1-indanone, fragmentations of monocyclic [C₉H₉O]⁺ isomers have been studied. These ions of known structure were prepared by CI protonation and fragmentation of the corresponding acids chlorides. It is demonstrated that the wide component of the [MH? CO]⁺ metastable peak induced by protonated 1-indanone fragmentation is the result of fragmentation of the [C₆H₅CH₂CH₂CO]⁺ isomer ion.     

Why Are B ions stable species in peptide spectra?

Protonated amino acids and derivatives RCH(NH₂)C(+O)X · H⁺ (X = OH, NH₂, OCH₃) do not form stable acylium ions on loss of HX, but rather the acylium ion eliminates CO to form the immonium ion RCH = NH ₂ ⁺ . By contrast, protonated dipeptide derivatives H₂NCH(R)C(+O)NHCH(R′)C(+O)X · H⁺ [X = OH, OCH₃, NH₂, NHCH(R″)COOH] form stable B₂ ions by elimination of HX. These B₂ ions fragment on the metastable ion time scale by elimination of CO with substantial kinetic energy release (T _1/2 = 0.3–0.5 eV). Similarly, protonated N-acetyl amino acid derivatives CH₃C(+O)NHCH(R′)C(+O)X · H⁺ [X = OH, OCH₃, NH₂, NHCH(R″)COOH] form stable B ions by loss of HX. These B ions also fragment unimolecularly by loss of CO with T _1/2 values of ～ 0.5 eV. These large kinetic energy releases indicate that a stable configuration of the B ions fragments by way of activation to a reacting configuration that is higher in energy than the products, and some of the fragmentation exothermicity of the final step is partitioned into kinetic energy of the separating fragments. We conclude that the stable configuration is a protonated oxazolone, which is formed by interaction of the developing charge (as HX is lost) with the N-terminus carbonyl group and that the reacting configuration is the acyclic acylium ion. This conclusion is supported by the similar fragmentation behavior of protonated 2-phenyl-5-oxazolone and the B ion derived by loss of H-Gly-OH from protonated C₆H₅C(+O)-Gly-Gly-OH. In addition, ab initio calculations on the simplest B ion, nominally HC(+O)NHCH₂CO⁺, show that the lowest energy structure is the protonated oxazolone. The acyclic acylium isomer is 1.49 eV higher in energy than the protonated oxazolone and 0.88 eV higher in energy than the fragmentation products, HC(+O)N⁺H = CH₂ + CO, which is consistent with the kinetic energy releases measured.     

Effect of protonation exothermicity on the chemical ionization mass spectra of some alkylbenzenes

The H₂, N₂/H₂, CO₂/H₂, N₂O/H₂, CO/H₂ and CH₄ chemical ionization mass spectra of thirteen C₈ to C₁₁ alkylbenzenes are reported. Characteristic hydride and alkide ion abstraction reactions are observed with all reagent gases. The major fragmentation reactions of [MH]⁺ are olefin elimination to form a protonated arene and arene elimination to form an alkyl ion. From the effect of structure and protonation exothermicity it is concluded that rearrangement of primary alkyl groups to the more stable secondary or tertiary structure occurs prior to alkyl ion formation. A detailed fragmentation mechanism for protonated arenes is proposed. The ‘effective’ proton affinity of the methane-derived reagent system is estimated to be ～556 kJ mol^?1.     

Identification and fragmentation pathways of caffeine metabolites in urine samples via liquid chromatography with positive electrospray ionization coupled to a hybrid quadrupole linear ion trap (LTQ) and Fourier transform ion cyclotron resonance mass spectrometry and tandem mass spectrometry

Liquid chromatography (LC) with positive ion electrospray ionization (ESI+) coupled to a hybrid quadrupole linear ion trap (LTQ) and Fourier transform ion cyclotron resonance mass spectrometry (FTICRMS) was employed for the simultaneous determination of caffeine and its metabolites in human urine within a single chromatographic run. LC/ESI‐FTICRMS led to the unambiguous determination of the molecular masses of the studied compounds without interference from other biomolecules. A systematic and comprehensive study of the mass spectral behaviour of caffeine and its fourteen metabolites by tandem mass spectrometry (MS/MS) was performed, through in‐source ion trap collision‐induced dissociation (CID) of the protonated molecules, [M+H]⁺. A retro‐Diels‐Alder (RDA) process along with ring‐contraction reactions were the major fragmentation pathways observed during CID. The base peak of xanthine precursors originates from the loss of methyl isocyanate (CH₃NCO, 57 Da) or isocyanic acid (HNCO, 43 Da), which in turn lose a CO unit. Also uric acid derivatives shared a RDA rearrangement as a common fragmentation process and a successive loss of CO₂ or CO. The uracil derivatives showed a loss of a ketene unit (CH₂CO, 42 Da) from the protonated molecule along with the loss of H₂O or CO. To assess the potential of the present method three established metabolite ratios to measure P450 CYP1A2, N‐acetyltransferase and xanthine oxidase activities were evaluated by a number of identified metabolites from healthy human urine samples after caffeine intake. Copyright © 2009 John Wiley & Sons, Ltd.     

Isomer differentiation via collision‐induced dissociation: The case of protonated α‐, β2‐ and β3‐phenylalanines and their derivatives

A combination of electrospray ionisation (ESI), multistage and high‐resolution mass spectrometry experiments is used to examine the gas‐phase fragmentation reactions of the three isomeric phenylalanine derivatives, α‐phenylalanine, β²‐phenylalanine and β³‐phenylalanine. Under collision‐induced dissociation (CID) conditions, each of the protonated phenylalanine isomers fragmented differently, allowing for differentiation. For example, protonated β³‐phenylalanine fragments almost exclusively via the loss of NH₃, only β²‐phenylalanine via the loss of H₂O, while α‐ and β²‐phenylalanine fragment mainly via the combined losses of H₂O + CO. Density functional theory (DFT) calculations were performed to examine the competition between NH₃ loss and the combined losses of H₂O and CO for each of the protonated phenylalanine isomers. Three potential NH₃ loss pathways were studied: (i) an aryl‐assisted neighbouring group; (ii) 1,2 hydride migration; and (iii) neighbouring group participation by the carboxyl group. Finally, we have shown that isomer differentiation is also possible when CID is performed on the protonated methyl ester and methyl amide derivatives of α‐, β²‐ and β³‐phenylalanines. Copyright © 2010 John Wiley & Sons, Ltd.     

Effect of method of ion preparation on low-energy collision-induced dissociation mass spectra

The collision-induced dissociation (CID) mass spectra of protonated cocaine and protonated heroin have been measured using a triple quadrupole mass spectrometer at 50 eV ion/neutral collision energy for protonated molecules prepared by different protonating agents. The CID mass spectra of protonated cocaine using H⁺(H₂O)_n, H⁺(NH₃)_n and H⁺((CH₃)₂NH)_n as protonating agents are essentially identical and it is concluded that, regardless of the initial site of protonation, the fragmentation reactions occurring on collisional activation are identical. By contrast, protonated heorin prepared with H⁺(H₂O)_n and H⁺(NH₃)_n as protonating agents show substantial differences. That formed by reaction of H⁺(H₂O)_n shows a much more abundant peak corresponding to loss of CH₃CO₂H. From a comparison with model compounds, and from a consideration of the three-dimensional structure of heroin, it is concluded that with H⁺(H₂O)_n as protonating agent significant protonation occurs at the acetate group attached to the alicyclic ring, leading to acetic acid loss on collisional activation, but that reaction of H⁺(NH₃)_n leads to protonation at the nitrogen function. The proton attached to nitrogen cannot interact with the acetate group and, consequently, the probability of loss of acetic acid on collislional activation is greatly reduced.     

Functional group interaction in the fragmentation of protonated 2,7-octanedione

The fragmentation of 2,7-octanedione, induced by chemical ionization with methane as a reagent gas (CI (CH₄)), is shown to be extensively governed by the interaction of the two carbonyl groups. Tandem mass spectrometry reveals that a sequential loss of H₂O and C₂H₄O from the [M + H]⁺ ion competes with sequential loss of H₂O and C₆H₁₀, and that both processes occur via the same [MH - H₂O]⁺ intermediate. This intermediate is likely to be formed via intramolecular gas-phase aldol condensation and subsequent dehydration. The resulting C(1) protonated 1-acetyl-2-methylcyclopentene structure readily accounts for the observed further decomposition to CH₃C?O⁺ and 1-methylcyclopentene (C₆H₁₀) or, alternatively, to [C₆H₉]⁺ (e. g. 1-methylcyclopentenylium) ions and acetaldehyde (C₂H₄O). Support for this mechanistic rationale is derived from deuterium isotope labelling and low-energy collision-induced dissociation (CID) of the [MH - H₂O]⁺ ion. The common intermediate shows a CID behaviour indistinguishable by these techniques from that of reference ions, which are produced by gas-phase protonation of the authentic cyclic aldol or by gas-phase addition of an acetyl cation to 1-methylcyclopentene in a CI (CH₃COOCH₃) experiment.     

The unusual fragmentation of long‐chain feruloyl esters under negative ion electrospray conditions

Long‐chain ferulic acid esters, such as eicosyl ferulate ( 1 ), show a complex and analytically valuable fragmentation behavior under negative ion electrospay collision‐induced dissociation ((?)‐ESI‐CID) mass spectrometry, as studied by use of a high‐resolution (Orbitrap) mass spectrometer. In a strong contrast to the very simple fragmentation of the [M + H]⁺ ion, which is discussed briefly, the deprotonated molecule, [M – H]^?, exhibits a rich secondary fragmentation chemistry. It first loses a methyl radical (MS²) and the ortho‐quinoid [M – H – Me]^‐? radical anion thus formed then dissociates by loss of an extended series of neutral radicals, C_nH_2n + 1^? (n = 0–16) from the long alkyl chain, in competition with the expulsion of CO and CO₂ (MS³). The further fragmentation (MS⁴) of the [M – H – Me – C₃H₇]^? ion, discussed as an example, and the highly specific losses of alkyl radicals from the [M – H – Me – CO]^‐? and [M – H – Me – CO₂]^‐? ions provide some mechanistic and structural insights.     

Gas-phase nazarov cyclization of protonated 2-methoxy and 2-hydroxychalcone: An example of intramolecular proton-transport catalysis

Upon CA, ESI generated [M + H]⁺ ions of chalcone (benzalacetophenone) and 3-phenyl-indanone both undergo losses of H₂O, CO, and the elements of benzene. CA of the [M + H]⁺ ions of 2-methoxy and 2-hydroxychalcone, however, prompts instead a dominant loss of ketene. In addition, CA of the [M + H]⁺ ions of 2-methoxy-β-methylchalcone produces an analogous loss of methylketene instead. Furthermore, the [M + D]⁺ ion of 2-methoxychalcone upon CA eliminates only unlabeled ketene, and the resultant product, the [M + D − ketene]⁺ ion, yields only the benzyl-d ₁ cation upon CA. We propose that the 2-methoxy and 2-hydroxy (ortho) substituents facilitate a Nazarov cyclization to the corresponding protonated 3-aryl-indanones by mediating a critical proton transfer. The resultant protonated indanones then undergo a second proton transport catalysis facilitated by the same ortho substituents producing intermediates that eliminate ketene to yield 2-methoxy- or 2-hydroxyphenyl-phenyl-methylcarbocations, respectively. The basicity of the ortho substituent is important; for example, replacement of the ortho function with a chloro substituent does not provide an efficient catalyst for the proton transports. The Nazarov cyclization must compete with an alternate cyclization, driven by the protonated carbonyl group of the chalcone that results in losses of H₂O and CO. The assisted proton transfer mediated by the ortho substituent shifts the competition in favor of the Nazarov cyclization. The proposed mechanisms for cyclization and fragmentation are supported by high-mass resolving power data, tandem mass spectra, deuterium labeling, and molecular orbital calculations.     

Loss of 45 Da from a<Subscript>2</Subscript> Ions and Preferential Loss of 48 Da from a<Subscript>2</Subscript> Ions Containing Methionine in Peptide Ion Tandem Mass Spectra

While analyzing tandem mass spectra of tryptic tripeptides, intense unassigned peaks were observed, corresponding to neutral loss of 45 Da from a₂ ions. This process was confirmed by MS³ experiments. Based on exact mass analysis, the loss was ascribed to (NH₃ + CO) or formamide. The proposed mechanism involves a cyclic form of the a₂ ions. The structure of the a₂ − 45 ions was confirmed by their fragmentation in MS³ experiments. Loss of (NH₃ + CO) from the a₂ ions occurs in competition with other paths, such as the loss of H₂O or the formation of immonium ions. However, if the a₂ ion contains methionine, a neutral loss of 48 Da (ascribed to CH₃SH) predominates, and is followed by the loss of (NH₃ + CO). These processes were confirmed by MS³ experiments. The intensity of the a₂ − 48 peak formed from XaaMet has a maximum value of 42% (of the total intensity of all ions) for Xaa=Gly, varies between 15% and 40% for most other Xaa residues, is lower for residues that can undergo loss of water or ammonia, and is very low for Lys or Arg. When the order of the residues is reversed to MetXaa, the loss of 48 Da is much smaller. This effect can be used to determine the sequence of b₂ ions containing Met in proteomic studies. Considerable loss of CH₃SH is observed from doubly protonated tryptic tripeptides with N-terminal Met, but the loss is much less when they are singly protonated or when Met is in the center position.     

The generation of triplet methoxy cations

The triplet methoxy cation has been generated in the gas phase by the collision induced charge reversal of methoxy anions. Its heat of formation was estimated to be 1034±20 kJ mol^?1, in reasonable agreement with ab initio calculations. ³[H₃CO]⁺ and its isomer [H₂COH]⁺ fragment unimolecularly by loss of H₂ via a common transition state and some 60% of the reactant's excess energy appears as translational energy of the products. Large isotope effects are involved in the former's fragmentation. The barrier for the isomerization reaction ³[H₃CO]⁺→[H₂COH]⁺ is small, <20 kJ mol^?1. The collision induced dissociation ³[H₃CO]⁺→[H₃C]⁺+O proceeds via two reaction channels.     

The unimolecular chemistry of protonated glycine and the proton affinity of glycine: a computational model

The potential energy hypersurface of protonated glycine, GH⁺, has been investigated. The calculated G2(MP2) value for the proton affinity (PA) of glycine, PA _calc=895kJ mol⁻¹, is in good agreement with the experimental value which has been estimated to lie in the range 864kJ mol⁻¹ < PA _exp <891kJ mol⁻¹. Ab initio quantum chemical calculations of relevant parts of the potential energy surface of GH⁺ give a reaction model which is consistent with the observed mass spectrometric fragmentation pattern. The lowest energy unimolecular reactions of GH⁺ are two distinct processes: (1) loss of CO, which has a substantial barrier for the reverse reaction, and (2) loss of CO plus H₂O, which has no barrier for the reverse reaction. Received: 15 November 1996 / Accepted: 6 May 1997     

The structure of decomposing [C7H7O]+ ions: Benzyl versus tropylium ion structures

The unimolecular dissociation reactions for [C₇H₇O]⁺ ions generated by fragmentation of a series of precursor molecules have been investigated. The metastable kinetic energy values and branching ratios associated with decarbonylation and expulsion of a molecule of formaldehyde (CH₂O) from the [C₇H₇O]⁺ ions are interpreted as the hydroxybenzyl and hydroxytropylium [C₇H₇O]⁺ not interconverting to a common structure on the microsecond time-scale. In addition, similar measurements on protonated benzaldehyde, methylaryloxy and phenyl methylene ether [C₇H₇O]⁺ ions are interpreted as the dominant fraction of these decomposing ions having unique structures on the microsecond time-scale. These results are supported by experimental heats of formation calculated from ionization/appearance energy measurements. The experimental heats of formation are determined as: hydroxybenzyl ions, 735 kJ mol^?1; hydroxytropylium ions, 656 kJ mol^?1; phenyl methylene ether ions, 640 kJ mol^?1; methylaryloxy ions 803 kJ mol^?1. The combination of the results reported in this paper with previously reported experimental data for stable [C₇H₇O]⁺ ions (see Ref. 1, C. J. Cassady, B. S. Freiser and D. H. Russell, Org. Mass Spectrom.) is interpreted as evidence that the relative population of benzyl versus tropylium [C₇H₇O]⁺ ion structures from a given precursor molecule is determined by isomerization of the parent ion and not by structural equilibration of the [C₇H₇O]⁺ ion.     

Photodissociation of protonated β-diketones in the gas phase

The gas phase photodissociation spectra of four protonated β-diketones were obtained and compared with the absorption spectra of the corresponding ions in solution. Protonated 2,4-pentanedione was observed to undergo the photodissociation process [C₅H₉O₂]⁺ +hν → [CH₃CO]⁺ +C₃H₆O with a λmax at 276±10 nm compared with a solution absorption maximum at 286 nm. Protonated 2,4-hexanedione was observed to undergo the photodissociation processes [C₆H₁₁O₂]⁺ +hν → [CH₃CO]⁺ +C₄H₈O and [C₆H₁₁O₂]⁺ +hν → [C₂H₅CO]⁺ +C₃H₆O with a λmax at 279±10 nm compared with a solution absorption maximum at 288 nm. Protonated 3-methyl-2,4-pentanedione was observed to undergo the photodissociation process [C₆H₁₁O₂]⁺ +hν → [CH₃CO]⁺ +C₄H₈O with a λmax at 295±10 nm compared with a solution absorption maximum at 305 nm. Protonated 1,1,1-trifluoro-2,4-pentanedione was observed to undergo the photodissociation process [C₅H₆F₃O₂]⁺ +hν → CF₃H+[C₄H₅O₂]⁺ with a λmax at 273±10 nm compared with a solution absorption maximum at 288 nm. The [CH₃CO]⁺ and [C₂H₅CO]⁺ produced photochemically with the first three ions react to regenerate the protonated β-diketone leading to a photostationary state. Photodissociation of the protonated alkyl β-diketones is believed to occur from the protonated keto form, whereas photodissociation of protonated 1,1,1-trifluoro-2,4-pentanedione is believed to occur from the protonated enol form. Mechanisms for the observed photodissociation processes are proposed and comparisons with results from related techniques are presented.     

Sr<Superscript>+</Superscript> + H<Subscript>2</Subscript>O ↔ SrOH<Superscript>+</Superscript> + H equilibrium in flames with strontium admixtures

Sr⁺ + H₂O ↔ SrOH⁺ + H equilibrium was studied spectrophotometrically. This reaction occurs in natural gas combustion products. Its enthalpy Δ_r H ^○(0) = 61.4 ± 2.8 kJ/mol and bond energy D ₀(Sr⁺-OH) = 432.6 ± 2.8 kJ/mol were determined using the third law of thermodynamics. The experimental data on this reaction obtained earlier in hydrogen flames, Δ_r H ^○(0) = 55.3 ± 10.6 and D ₀(Sr⁺-OH) = 438.7 ± 10.6 kJ/mol, were interpreted anew. The D ₀(Sr⁺-OH) = 432.8 ± 2.7 kJ/mol value was eventually obtained.     

Molecular formula analysis of fragment ions by isotope‐selective collision‐induced dissociation tandem mass spectrometry of pharmacologically active compounds

The purpose of this work is to explore the mass fragment characterization of commonly used drugs through a novel approach, which involves isotope‐selective tandem mass spectrometry (MS/MS). Collision‐induced dissociation (CID) was performed with a low‐resolution linear ion trap mass spectrometer in positive electrospray ionization. Three pharmacologically active ingredients, i.e. omeprazole, meloxicam and brinzolamide, selected as model compounds in their own formulation, were investigated as a sodiated adduct [C₁₇H₁₉N₃O₃S + Na]⁺ (omeprazole) and as protonated adducts, [C₁₄H₁₃N₃O₄S₂ + H]⁺ and [C₁₂H₂₁N₃O₅S₃ + H]⁺, meloxicam and brinzolamide, respectively. Selecting a narrow window of ±0.5 m/z units, precursor ion fragmentation by CID‐MS/MS of isotopologues A + 0, A + 1 and A + 2 was found very useful to confirm the chemical formula of product ions, thus aiding the establishment of characteristic fragmentation pathways of all three examined compounds. The correctness of putative molecular formula of product ions was easily demonstrated by exploiting the isotope peak abundance ratios (i.e. I_F+0/I_F+1 and I_F+0/I_F+2) as simple constraints in low‐resolution MS instrumentations. Copyright © 2014 John Wiley & Sons, Ltd.     

Structure and further fragmentation of significant [a3 + Na − H]+ ions from sodium‐cationized peptides

A good understanding of gas‐phase fragmentation chemistry of peptides is important for accurate protein identification. Additional product ions obtained by sodiated peptides can provide useful sequence information supplementary to protonated peptides and improve protein identification. In this work, we first demonstrate that the sodiated a₃ ions are abundant in the tandem mass spectra of sodium‐cationized peptides although observations of a₃ ions have rarely been reported in protonated peptides. Quantum chemical calculations combined with tandem mass spectrometry are used to investigate this phenomenon by using a model tetrapeptide GGAG. Our results reveal that the most stable [a₃ + Na ? H]⁺ ion is present as a bidentate linear structure in which the sodium cation coordinates to the two backbone carbonyl oxygen atoms. Due to structural inflexibility, further fragmentation of the [a₃ + Na ? H]⁺ ion needs to overcome several relatively high energetic barriers to form [b₂ + Na ? H]⁺ ion with a diketopiperazine structure. As a result, low abundance of [b₂ + Na ? H]⁺ ion is detected at relatively high collision energy. In addition, our computational data also indicate that the common oxazolone pathway to generate [b₂ + Na ? H]⁺ from the [a₃ + Na ? H]⁺ ion is unlikely. The present work provides a mechanistic insight into how a sodium ion affects the fragmentation behaviors of peptides. Copyright © 2015 John Wiley & Sons, Ltd.