Biosensing and protein fluorescence enhancement by functionalized porous silicon devices

Porous silicon (PSi) is a promising biomaterial presenting the advantage of being biocompatible and bioresorbable. Due to the large specific surface area and unique optical features, these microporous structures are excellent candidates for biosensing applications. Investigating device functionality and developing simple Si-based transducers need to be addressed in novel biological detection. Our work demonstrates that, among the various PSi configurations for molecular detection, PSi microcavity structure demonstrates the best biosensing performance, reflected through the enhanced luminescence response and the changes in the refractive index. For successful immobilization, molecular infiltration and confinement are the two key factors that are controlled by the pore size distribution of the PSi microcavities and by the surface modification obtained by silane-glutaraldehyde chemistry. Enhancement of the fluorescence emission of confined fluorescent biomolecules in the active layer of PSi microcavities was observed for a nonlabeled protein with a natural green fluorescence, the glucose oxidase enzyme (GOX). An increase in the fluorescence emission was also observed when functionalized PSi material was used to detect specific binding between biotin and a low concentration of labeled streptavidin. Evidence for the enzymatic activity of GOX in its adsorbed form is also presented. Use of smart silicon devices, enabling enhancement of fluorescence emission of biomolecules, offers easy-to-use biosensing, based on the luminescence response of the molecules to be detected.     

Excimer and monomer emission of pyrene crystals associated with the phase transition

Emission spectra and decay times of the fluorescence under the excitation of various energies were measured in pyrene crystals. At liquid nitrogen temperature, a new excimer emission was found under 390 nm excitation, and its peak shifts a little to the high energy in comparison with that of the familiar excimer. The decay time of the former emission abruptly changes around 125°K, which seems to be due to the phase transition in pyrene crystals. Also, when the crystals were rapidly cooled below 125°K, the monomer emission in the crystals was observed, and its decay time was about 600 nsec.     

Characterization of acridine species adsorbed on (NH4)2SO4, SiO2, Al2O3, and MgO by steady-state and time-resolved fluorescence and diffuse reflectance techniques

The ground- and excited-state species of acridine adsorbed on (NH(4))(2)SO(4), SiO(2), Al(2)O(3), and MgO surfaces were investigated in order to determine the precursor species and electronic states responsible for acridine photodegradation on particles serving as models of atmospheric particulate matter. The species present on each solid surface were characterized by comparing the steady-state absorption and fluorescence spectra, time-resolved fluorescence, and absorption measurements on acridine in solution with those corresponding to adsorbed acridine. On silica, the ground-state species present were hydrogen-bonded, neutral, and protonated, while on alumina hydrogen-bonded and neutral species were identified. A comparison of the protonated acridine absorption and emission intensities on silica and alumina with those observed for acridine in acidic water demonstrated that the emission on the surfaces is higher than expected. This was interpreted as resulting from photoprotolytic reactions on silica and alumina. For acridine adsorbed on ammonium sulfate, protonated acridine was the only adsorbed species identified. Since, at a similar ground-state absorbance, the fluorescence intensity of acridine on ammonium sulfate was smaller than for acridine in acidic water, the quenching of the excited state or a rapid photochemical reaction with the surface was proposed. On magnesium oxide, the presence of neutral and hydrogen-bonded acridine species were characterized from the two-component analysis of the fluorescence, the triplet-triplet absorption decay curves, and the time-resolved emission spectra at different time delays. As demonstrated in these studies, acridine adsorbed species and their decay pathways depend on the acidic properties of these models of atmospheric particulate matter. In addition, a comparison of the photodegradation rates of acridine on the different solids tested is presented and discussed in terms of the nature of the species and their decay pathways.     

Ultrafast relaxation dynamics of a biologically relevant probe dansyl at the micellar surface

We report picosecond-resolved measurement of the fluorescence of a well-known biologically relevant probe, dansyl chromophore at the surface of a cationic micelle (cetyltrimethylammonium bromide, CTAB). The dansyl chromophore has environmentally sensitive fluorescence quantum yields and emission maxima, along with large Stokes shift. In order to study the solvation dynamics of the micellar environment, we measured the fluorescence of dansyl chromophore attached to the micellar surface. The fluorescence transients were observed to decay (with time constant approximately 350 ps) in the blue end and rise with similar timescale in the red end, indicative of solvation dynamics of the environment. The solvation correlation function is measured to decay with time constant 338 ps, which is much slower than that of ordinary bulk water. Time-resolved anisotropy of the dansyl chromophore shows a bi-exponential decay with time constants 413 ps (23%) and 1.3 ns (77%), which is considerably slower than that in free solvents revealing the rigidity of the dansyl-micelle complex. Time-resolved area-normalized emission spectroscopic (TRANES) analysis of the time dependent emission spectra of the dansyl chromophore in the micellar environment shows an isoemissive point at 21066 cm-1. This indicates the fluorescence of the chromophore contains emission from two kinds of excited states namely locally excited state (prior to charge transfer) and charge transfer state. The nature of the solvation dynamics in the micellar environments is therefore explored from the time-resolved anisotropy measurement coupled with the TRANES analysis of the fluorescence transients. The time scale of the solvation is important for the mechanism of molecular recognition.     

Thioflavin T: Electronic Circular Dichroism and Circularly Polarized Luminescence Induced by Amyloid Fibrils

The circularly polarized luminescence (CPL) spectrum of thioflavin T (ThT) bound to insulin amyloid fibrils has been measured for the first time. It has been found that the samples exhibiting induced circular dichroism (CD) retain the optical activity in the CPL spectra, with the same sign of the rotatory strength. The fluorescence dissymmetry factor is substantial (of the order of magnitude 10^?2). Unlike in the corresponding CD and absorption spectra, there is no shift of the CPL band with respect to the fluorescence band. It has been verified that the measured CPL spectra are free from artifacts from circularly polarized scattering of emitted light by conducting additional measurements in a medium with a refractive index similar to insulin (methylsalicylate). The CD and CPL spectra have been interpreted by means of density functional calculations carried out for ThT in its ground and first excited states in different dielectric environments and for ThT interacting with an aromatic ring. It has been found that the presence of an aromatic ring close to the ThT molecule induces Cotton effects of the same order of magnitude as the stabilization of one enantiomeric conformer. Thus, it is expected that both mechanisms contribute to the induced CD and CPL effect to a similar degree.     

The effect of a mild base on curcumin in methanol and ethanol

Steady-state and time-resolved emission techniques were employed to study the effect of acetate, a mild base, on the luminescence of curcumin in methanol and ethanol. We found that the steady-state emission intensity as well as the average fluorescence decay time are reduced by a factor of 5 when the acetate concentration is raised to about 1.8 M. We attribute this large effect to an excited-state proton transfer (ESPT) from the acidic groups of curcumin to the acetate anion. We analyze the experimental data in terms of an ESPT reaction occurring between a photoacid and a base.     

Time-resolved fluorescence studied at dielectric interfaces

Luminescence spectra, fluorescence decay curves and time-resolved emission spectra of aromatic molecules and aromatics with proton donating or accepting groups adsorbed on low activated dielectric metal oxides have been investigated. The non-exponential decay is assigned to a superposition of monomer and aggregate fluorescence, to different orientation of the transition dipole moments relative to the dielectric surface, and to different chemical nature of the adsorbed species. According to the extremely prolongation of the decay times of aromatics with proton donating and accepting groups it is assumed that these molecules are adsorbed perpendicular to the surface while pure aromatics are flat adsorbed via their aromatic π-system.     

Donor–acceptor nonradiative energy transfer mediated by surface plasmons on ultrathin metallic films

Selected properties of donor–acceptor energy transfer in the presence of surface plasmon coupled emission (SPCE) on metallic nanofilms are demonstrated. These properties of surface plasmon mediated energy transfer (SPMET) are for the first time compared to those of traditional energy transfer (ET) based on the same donor–acceptor system. The presence of plasmons significantly accelerates energy transfer as revealed by the results of fluorescence intensity decay. In particular, the rise time of acceptor fluorescence intensity upon donor excitation is 10 times shorter in the presence of SPCE. It is also observed that contrary to ET the sensibilized acceptor emission in SPMET is totally linearly polarized.     

ENERGY TRANSFER FROM CHLOROPHYLL b TO CHLOROPHYLL a IN A HYDROPHOBIC MODEL SYSTEM

Abstract— Chlorophyll a and chlorophyll b purified by high-performance liquid chromatography (HPLC) were subsequently adsorbed on the surface of a pellicular reverse phase packing normally used in HPLC. The granule surface is reacted with octadecyl groups and furnishes an hydrophobic substrate for pigment adsorption. Reflectance spectra of chlorophyll a and chlorophyll b , each adsorbed at average spacings of about 11 nm² per molecule, had red region maxima at 664 and 643nm respectively. Fluorescence excitation spectra for 740nm emission from these surfaces peaked at about 420nm for chlorophyll a and 460nm for chlorophyll b. Adsorbed pigments excited at either of the two wave lengths had a single fluorescence emission peak at 683nm for chlorophyll a and at 664nm for chlorophyll b. A surface having both pigments adsorbed in approximately equal amounts with an overall average spacing of about 5.6nm² per molecule also had peaks at 420 and 460nm in the excitation spectrum. However, excitation of adsorbed molecules on this (latter) surface, at either 420 or 460nm, produced emission with the single chlorophyll a peak at 683nm. It is concluded that, under the conditions of our experiment, exciting adsorbed chlorophyll b contributes strongly to emission from adsorbed chlorophyll a.     

Fluorescence properties of perylyne aggregates in a polymer matrix (PMMA)

Fluorescene and fluorescence excitation spectra as well as fluorescence decay functions of solid solutions of up to 7×10⁻² M perylene in PMMA have been measured upon variable site-selective dopant excitation. Fluorescence spectra are the analogue to the Y emission of the -modification of crystalline perylene. Fluorescence decay is non-exponential, the average decay time being correlated with the appearance of the 1150 cm⁻¹ b_2u mode in the emission spectrum. It is concluded that the polymer matrix generates a distribution of ground state pair conformations. After excitation pairs relax to structures with statistically varying coordinates leading to a distribution of decay times. With increasing pair excitation energy the Stokes shift increases indicating greater stability of the excited pair. Spectral as well as decay time analysis suggest that in the parallel pair structure radiative decay is promoted by the non-totally symmetric 1150 cm⁻¹ molecular vibration.     

Role of dopant concentration and surface coating on photophysical properties of CdS: Eu3+ nanocrystals

Here, we report the role of dopant concentration and surface coating of CdS: Eu3+ nanocrystals on the modification of crystal structure and their photoluminescence properties by steady-state and time resolved fluorescence studies. It is found that photoluminescence properties are sensitive to the crystal structure which is controlled by surface coating and dopant concentration. The emission intensity of the peak at 614 nm (5D0 --> 7F2) of the Eu3+-ions is found to be sensitive to the doping and surface coating of CdS nanocrystals. It is found that the average decay times tau are 248, 353 and 499 micros for 0.25, 0.5 and 1.0 mol% Eu ions doped into CdS nanocrystals, respectively. From the decay time measurements, it is evident that the energy transfer occurs from CdS nanoparticles to Eu3+ ions and the calculated energy transfer efficiency from CdS nanoparticles to Eu3+ ions is 9.2 and 35% for Eu3+ ions coated and doped CdS nanoparticles, respectively. Our analysis suggests that site symmetry of ions plays a very important role in the modifications of radiative and nonradiative relaxation mechanisms.     

Long fluorescence lifetime of pyrazine vapors

By the study of the pressure dependence of the fluorescence and phosphorescence yields of pyrazine vapors in the pressure range of 10⁻²-10 torr it was established that the fluorescence decay is not exponential but contains a long component (τ ≈ 10⁻⁶–10⁻⁷ sec) corresponding to the “dilution” of the singlet radiative properties in the dense manifold of triplet levels. The phosphorescence is due exclusively to the collisionally induced relaxation from the quasi-stationary state to the pure triplet state.     

Application of time- and space-resolved fluorescence spectroscopy to the distribution of guest species into micrometer-sized zeolite crystals

We measured the fluorescence decays and spectra of perylene adsorbed from solution into zeolite X crystals of 2-3 microm in diameter at the level of individual crystals by the application of a microscopy method coupled with a single photon counting apparatus and a multichannel spectrophotometer. We found that both decays and spectra are particle-dependent, i.e. a particle-to-particle difference was observed for the fluorescence decay curves at a fixed loading level along with a particle-dependent spectral change due to the various contribution of excimer emission band relative to those of three monomers. These findings are due to a non-homogeneous distribution which is confirmed by the various emission intensities of perylene-loaded zeolite crystals observed by fluorescence microscopy. Previously, a homogeneous distribution of the guest between zeolite crystals has been just taken for granted and not justified by experiment. The present result suggests that commonly employed collective measurements such as UV-VIS absorption and emission spectroscopies, IR and Raman spectroscopies, and NMR of bulk zeolite powders provide only averaged results and may sometimes suffer from acquiring precise molecular level pictures.     

FLUORESCENCE RELAXATION KINETICS AND QUANTUM YIELD FROM THE PHYCOBILISOMES OF THE BLUE-GREEN ALGA NOSTOC SP. MEASURED AS A FUNCTION OF SINGLE PICOSECOND PULSE INTENSITY*

Abstract— A detailed experimental study of the effect of intensity of a 6 ps excitation pulse on the decay kinetics and yield from phycobilisomes (PBsomes) is presented. The fluorescence from the c-phycoerythrin (PE) emission from PBsomes was found to decay as a single exponential with a time of 31 ± 4ps for an excitation intensity <10¹⁴ photons/cm² per pulse. The risetime of the c-phycocyanin (PC) and allophycocyanin (APC) emission from PBsomes was found to be 34 ± 13 ps. Therefore, at low excitation intensities, the energy transfer time between the constituent phycobiliproteins, PE and PC, is measured to be 34 ± 13ps from the fluorescence decay time of PE and the fluorescence risetime of the PC and APC emission. The fluorescence yield from the PE emission component in PBsomes was found to be intensity dependent for excitation intensities >10¹⁴ photons/cm². The decrease in yield with increased intensity in this case occurred at a higher intensity than in the isolated phycobiliprotein PE. The fluorescence yield of the PC and APC emission component was also found to decrease markedly with increasing excitation intensity. This is in contrast to the case of the isolated phycobiliprotein APC which showed only a slight quenching of the fluorescence. The higher quenching observed for the APC emission in the PBsome evidences the higher effective absorption of APC via energy transfer from PE to PC and APC.     

Modeling the nonradiative decay rate of electronically excited thioflavin T

A computational model of nonradiative decay is developed and applied to explain the time-dependent emission spectrum of thioflavin T (ThT). The computational model is based on a previous model developed by Glasbeek and co-workers (van der Meer, M. J.; Zhang, H.; Glasbeek, M. J. Chem. Phys. 2000, 112, 2878) for auramine O, a molecule that, like ThT, exhibits a high nonradiative rate. The nonradiative rates of both auramine O and ThT are inversely proportional to the solvent viscosity. The Glasbeek model assumes that the excited state consists of an adiabatic potential surface constructed by adiabatic coupling of emissive and dark states. For ThT, the twist angle between the benzothiazole and the aniline is responsible for the extensive mixing of the two excited states. At a twist angle of 90°, the S(1) state assumes a charge-transfer-state character with very small oscillator strength, which causes the emission intensity to be very small as well. In the ground state, the twist angle of ThT is rather small. The photoexcitation leads first to a strongly emissive state (small twist angle). As time progresses, the twist angle increases and the oscillator strength decreases. The fit of the experimental results by the model calculations is good for times longer than 3 ps. When a two-coordinate model is invoked or a solvation spectral-shift component is added, the fit to the experimental results is good at all times.     

A comprehensive study of concepts and phenomena of the nonspecific adsorption of beta-lactoglobulin.

We investigate nonspecific protein adsorption processes by comparing experimentally measured adsorption kinetics of beta-lactoglobulin with mathematical models. The adsorption and desorption behavior of this protein on a hydrophilic glass surface in citrate buffer (pH 3.0), monitored for a large set of different bulk concentrations (0.5x10(-8) M-1.5x10(-6) M) using a supercritical angle fluorescence (SAF) biosensor, is reported. Increasing adsorption rates and overshootings in the beginning of the adsorption are observed as well as a transition to an almost irreversibly bound state of the protein in the long term. Furthermore, rinsing experiments prove that adsorbed proteins abruptly change their desorption behavior from irreversible to reversible when a critical surface coverage theta(crit) is reached. Based on all experimental observations, a mathematical model composed of three adsorbed states differing in their surface affinity is proposed. Terms to account for lateral interactions between surface-bound proteins are included, which yield an excellent fit of the measured kinetics. For the first time, several phenomena that have been discussed in theoretical studies are confirmed by comparing experimental data with a single model.     

Temperature effects on femtosecond transient absorption kinetics of semiconducting single-walled carbon nanotubes

We report femtosecond transient absorption kinetics measured for selected semiconducting single-walled carbon nanotubes at different temperatures between 77 and 290 K. The nanotubes are embedded in a thin polymethylmethacrylate film, and the dominance of individual species enabled to probe selectively the kinetics associated with two desired tube types, the (6,5) and (7,5) tubes. A strikingly similar temperature dependence is found between the maximum change in the amplitude of transient absorption kinetics, the overall decay time and steady-state fluorescence emission intensity. The simplest explanation for our data is that the temperature dependence of the fluorescence intensity and the exciton decay kinetics are dominated by nonradiative decay and that the radiative decay rate is weakly temperature dependent.     

On the heterogeneity of fluorescence lifetime of room temperature ionic liquids: onset of a journey for exploring red emitting dyes

An excitation and emission wavelength dependent non-exponential fluorescence decay behaviour of room temperature ionic liquids (RTILs) has been noted. Average fluorescence lifetimes have been found to vary by a factor of three or more. Red emitting dyes dissolved in RTILs are found to follow hitherto unobserved single exponential fluorescence decay behaviour.     

FLUORESCENCE KINETICS OF SPINACH CHLOROPLASTS MEASURED WITH A PICOSECOND OPTICAL KERR GATE

Abstract. An overview of the reported chlorophyll a fluorescence lifetimes from green plant photosystems is presented and the problems encountered in the measurement of fluorescence lifetime using two currently available picosecond techniques are discussed.
The fluorescence intensity of spinach chloroplasts exposed to 10 ps flashes was measured as a function of time after the flash and wavelength of observation by the ultrafast Kerr shutter technique. Using a train of 100 pulses separated by 6ns and with an average photon flux per pulse of ˜2 times 10¹⁴ photons/cm², the fluorescence intensity at 685 nm (room temperature) was found to decay with two components, a fast one with a 56 ps lifetime, and a slow one with a 220 ps lifetime. The 730 nm fluorescence intensity at room temperature decays as a single exponential with a 100 ps lifetime. The 730 nm fluorescence lifetime was found to increase by a factor of 6 when the temperature was lowered from room temperature to 90 K while the lifetime of 685 and 695 nm fluorescence were unchanged. At room temperature, the fast and slow components at 685 nm are attributed to the emission from pigment system I (PS I) and PS II, respectively. It is likely that the absolute values of lifetimes, reported here, may increase if single ps low intensity flashes are used for these measurements.     

Cavitand-functionalized porous silicon as an active surface for organophosphorus vapor detection

This paper reports on the preparation of a porous silicon-based material covalently functionalized with cavitand receptors suited for the detection of organophosphorus vapors. Two different isomeric cavitands, both containing one acid group at the upper rim, specifically designed for covalent anchoring on silicon, were grafted on H-terminated porous silicon (PSi) by thermal hydrosilylation. The covalently functionalized surfaces and their complexation properties were characterized by combining different analytical techniques, namely X-ray photoelectron spectroscopy (XPS), Fourier transform infrared spectroscopy (FTIR), and mass spectroscopy analysis coupled with thermal desorption experiments. Complexation experiments were performed by exposing both active surfaces and a control surface consisting of PSi functionalized with a structurally similar but inactive methylene-bridged cavitand (MeCav) to dimethyl methylphosphonate (DMMP) vapors. Comparison between active and inactive surfaces demonstrated the recognition properties of the new surfaces. Finally, the nature of the involved interactions, the energetic differences between active and inactive surfaces toward DMMP complexation, and the comparison with a true nerve gas agent (sarin) were studied by DFT modeling. The results revealed the successful grafting reaction, the specific host-guest interactions of the PSi-bonded receptors, and the reversibility of the guest complexation.