Cowpea mosaic virus capsid: a promising carrier for the development of carbohydrate based antitumor vaccines

Immunotherapy targeting tumor cell surface carbohydrates is a promising approach for cancer treatment. However, the low immunogenecity of carbohydrates presents a formidable challenge. We describe here the enhancement of carbohydrate immunogenicity by an ordered display on the surface of the cowpea mosaic virus (CPMV) capsid. The Tn glycan, which is overexpressed on numerous cancer cell surfaces, was selected as the model antigen for our study. Previously it has been shown that it is difficult to induce a strong T cell-dependent immune response against the monomeric form of Tn presented in several ways on different carriers. In this study, we first synthesized Tn antigens derivatized with either a maleimide or a bromoacetamide moiety that was conjugated selectively to a cysteine mutant of CPMV. The glycoconjugate was then injected into mice and pre- and post-immune antibody levels in the mice sera were measured by enzyme-linked immunosorbant assays. High total antibody titers and, more importantly, high IgG titers specific for Tn were obtained in the post-immune day 35 serum, suggesting the induction of T cell-dependent antibody isotype switching by the glycoconjugate. The antibodies generated were able to recognize Tn antigens presented in their native conformations on the surfaces of both MCF-7 breast cancer cells and the multidrug resistant breast cancer cell line NCI-ADR RES. These results suggest that the CPMV capsid can greatly enhance the immunogenicity of weak antigens such as Tn and this can provide a promising tool for the development of carbohydrate based anti-cancer vaccines.     

New addresses on an addressable virus nanoblock; uniquely reactive Lys residues on cowpea mosaic virus

Cowpea mosaic virus (CPMV) is a robust, icosahedrally symmetric platform successfully used for attaching a variety of molecular substrates including proteins, fluorescent labels, and metals. The symmetric distribution and high local concentration of the attached molecules generates novel properties for the 30 nm particles. We report new CPMV reagent particles generated by systematic replacement of surface lysines with arginine residues. The relative reactivity of each lysine on the native particle was determined, and the two most reactive lysine residues were then created as single attachment sites by replacing all other lysines with arginine residues. Structural analysis of gold derivatization not only corroborated the specific reactivity of these unique lysine residues but also demonstrated their dramatically different presentation environment. Combined with site-directed cystine mutations, it is now possible to uniquely double label CPMV, expanding its use as an addressable nanoblock.     

Sericite clay as a raw material for the fabrication of whiteware bodies

The possibility was investigated of abtaining porcelain bodies using a sericitic clay, whose fundamental characteristics are to form a very reactive glassy phase, to have an exceptional firing range and a very fine grain size, and a tendency to produce bodies with a very high mullite content at low temperature. The second aim was to obtain porcelain bodies at low firing temperatures with a high flexural strength and large mullite content using only the above-mentioned clay, alumina and a small and constant amount of feldspar. To cover different porcelain types, both silicious and aluminous, eight compositions were formulated and fired between 1200°C and 1320°C and the technological properties, microstructures, phases, etc., were studied. For comparison with the results obtained with the new compositions, two industrial porcelain bodies were formulated and studied at the same time under the same conditions. The paper shows the possibility of obtaining porcelain bodies with much better properties than present industrial ones, and at the same time with a significant saving in the cost of raw materials.     

Studies on the conformation of a polyelectrolyte in solution: local conformation of cucumber green mottle mosaic virus RNA compared with tobacco mosaic virus RNA

The thermal stability of the local structures of cucumber green mottle mosaic virus RNA, CGMMV-RNA, and tobacco mosaic virus RNA, TMV-RNA, was studied by circular dichroism (CD) and small-angle X-ray scattering (SAXS) and compared with each other in the temperature domain from 20 to 50 degrees C. The temperature dependence of the molar ellipticity and mean-square radius of the cross section of a chain shows that the structure of CGMMV-RNA is more vulnerable than that of TMV-RNA. Such a different thermal stability of their structures was also reflected in the temperature dependence of the length and number of the constituent rods when the structures of the two RNA chains were represented by a model which consisted of rods joined with freely hinged joints. From these results, a possibility was suggested that the structural stability of CGMMV-RNA and TMV-RNA might be correlated with the infectivity of the corresponding virus, CGMMV and TMV, respectively.     

Building addressable libraries: the use of electrochemistry for spatially isolating a heck reaction on a chip

Pd(0) was generated at preselected sites on an electrochemically addressable chip and then utilized to effect a Heck reaction. The Pd(0) was confined to the preselected electrodes with the use of allylmethyl carbonate. Unlike most mediated electrochemical reactions, the electrolysis in this case was not used to convert a stoichiometric process into a catalytic one by recycling the metal. Instead, the unique environment of the chip was used to interfere with a catalytic process to make it stoichiometric. This was done to gain spatial control over the reaction. The development of a strategy for conducting Pd(0)-catalyzed reactions on the chips should greatly expand the synthetic chemistry available for building chip-based libraries.     

Chemoselectively addressable template: a valuable tool for the engineering of molecular conjugates

We herein report the modular design and the synthesis of new molecular conjugates, which can combine a cell targeting function (ligand domain) with potential cytotoxic molecules (effector domain). The present approach utilizes a cyclic peptide template, Chemoselectively Addressable Template (CAT) as a key intermediate. These CAT molecules exhibit two independent and chemically addressable domains which permits the sequential and regioselective assembly of different ligand and/or effector domains. The attachment of various units to the template was achieved by the formation of iterative oxime bonds. The chemoselective oxime bonds were produced by the reaction of glyoxylyl aldehyde groups obtained from serine precursors. The process was further developed to prevent transoximation reactions. RAFT(c[-RGDfK-])4, a synthetic vector targeting the tumor-associated a alpha(V)beta3 integrin was prepared and coupled to either a cytotoxic peptide or oligonucleotide as an illustration of present approach. The potential application of this approach has been further demonstrated by the synthesis of high molecular weight compounds such as RAFT(c[-RGDfK-])16, a alpha(V)beta3-targeting ligand of high valency index.     

Molecular calculations for microanalysis on a programmable calculator : Microlab calculator programming

For the microanalytical staff that serves a strongly research-oriented laboratory, calculations are continuously being made which are to an extent repetitious in nature. The calculator has not always been superseded by the computer for this work. On the other hand, the card-programmable calculator offers convenience in accessibility and relief from tedious repetitive key-stroking. Two programs, ready for use in the Hewlett-Packard HP-65 calculator, are presented and discussed. These particular programs were chosen for their differences in operation, for their complementary format, and for their utility in microanalytical determinations. In a word, they were chosen to show the broad attack on microanalytical calculations offered by the card-programmable calculators with limited memory.     

Oxozinc carboxylate complexes: a new synthetic approach and the carboxylate ligand effect on the noncovalent-interactions-driven self-assembly

An atom-efficient and mild synthesis of a series of oxozinc carboxylates [Zn(4)(μ(4)-O)(O(2)CR)(6)] [where R = Ph (2a), p-PhC(6)H(4) (2b), p-MeC(6)H(4) (2c), and p-MeSC(6)H(4) (2d)] from well-defined alkylzinc precursors and H(2)O is described. The molecular and crystal structures of the resulting complexes have been determined by single-crystal X-ray diffraction. A closer examination of their crystal structure provides a direct picture of the effect of the nature of substituents on the molecular self-assembly of the octahedral oxozinc through noncovalent interactions. It was revealed that these discrete oxozinc clusters can form diverse types of noncovalent assemblies ranging from structures representing zeolitic topologies in the case of 2a to soft porous materials with gated voids or open channels for the remaining molecular clusters.     

Building addressable libraries: The use of a mass spectrometry cleavable linker for monitoring reactions on a microelectrode array

Time-of-flight secondary ion mass spectrometry (TOF SIMS) has been used in conjunction with a mass spectrometry cleavable linker to determine the percent conversion of reactions that were conducted site-selectively on an addressable microelectrode array. When combined with fluorescence techniques for analysis of the reactions, the TOF SIMS experiment provides a means for optimization of both reaction confinement and reaction efficiency on the microelectrode arrays.     

Individually addressable electrode array for multianalyte electrochemiluminescent immunoassay based on a sequential triggering strategy

Multianalyte immunoassay in a single run is often necessary to monitor or quantitate several components in a complex sample matrix for various purposes. In this paper we present a novel, individually addressable electrode array for sequential electrochemiluminescent (ECL) immunoassay using a non-array detector. An immunosensor array was fabricated by site-selectively immobilizing multiple antigens on different electrodes. With a competitive immunoassay format, the amounts of the bound Ru(bpy)(3)(2+) derivative labeled antibodies decreased with the increase of the antigens in the sample, and the ECL signals from different immunosensors were collected in turn by a photomultiplier with the aid of a home-made single-pore-three-throw switch. Using human IgG and rat IgG as model analytes, this multianalyte immunoassay showed detection limits down to 8.9 and 7.2 ng mL(-1) for them, respectively. The results for real sample analysis demonstrated that this strategy can provide a simple, sensitive, low-cost and high-throughput ECL immunosensor array for clinical diagnosis.     

Surfactant-induced amorphous aggregation of tobacco mosaic virus coat protein: a physical methods approach

The interactions of non-ionic surfactant Triton X-100 and the coat protein of tobacco mosaic virus, which is an established model for both ordered and non-ordered protein aggregation, were studied using turbidimetry, differential scanning calorimetry, isothermal titration calorimetry, and dynamic light scattering. It was found that at the critical aggregation concentration (equal to critical micelle concentration) of 138 x 10(-6) M, Triton X-100 induces partial denaturation of tobacco mosaic virus coat protein molecules followed by protein amorphous aggregation. Protein aggregation has profound ionic strength dependence and proceeds due to hydrophobic sticking of surfactant-protein complexes (start aggregates) with initial radii of 46 nm. It has been suggested that the anionic surfactant sodium dodecyl sulfate forms mixed micelles with Triton X-100 and therefore reverses protein amorphous aggregation with release of protein molecules from the amorphous aggregates. A stoichiometric ratio of 5 was found for Triton X-100-sodium dodecyl sulfate interactions.     

Metallized hyperbranched polydiyne: a photonic material with a large refractive index tunability and a spin-coatable catalyst for facile fabrication of carbon nanotubes

A cobalt-containing hyperbranched polydiyne shows refractive indexes (n) as high as 1.713-1.813 in the long wavelength region, which can be tuned to a large extent (Deltan up to approximately 0.048) by UV irradiation; the polymer can also function as a spin-coatable catalyst for the growth of carbon nanotubes.     

MeTA studio: a cross platform, programmable IDE for computational chemist

The development of a cross-platform, programmable integrated development environment (IDE), MeTA Studio, specifically tailored but not restricted to computational chemists working in the area of quantum chemistry with an emphasis on handling large molecules is presented. The IDE consists of a number of modules which include a visualizer and a programming and collaborative framework. The inbuilt viewer assists in visualizing molecules, their scalar fields, manually fragmenting a molecule, and introduces some innovative but simple techniques for handling large molecules. These include a simple Find language and simultaneous multiple camera views of the molecule. Basic tools needed to handle collaborative computing effectively are also included opening up new vistas for sharing ideas and information among computational chemists working on similar problems. MeTA Studio is an integrated programming environment that provides a rich set of application programming interfaces (APIs) which can be used to easily extend its functionality or build new applications as needed by the users. (http://code.google.com/p/metastudio/).     

The use of a detectable,mass-spectrometry-cleavable linker for quality control on an addressable microelectrode array

The synthesis, site-selective placement, and TOF-SIMS cleavage properties of a new, fluorescent linker for attaching molecules to a microelectrode array are reported. The linker was developed to provide a handle for quality control assessment of the microelectrode arrays being used to probe the binding of molecular libraries with biological receptors.     

Magnesium-tetrazaporphyrin incorporated PVC matrix as a new material for fabrication of Mg(2+) selective potentiometric sensor

Membrane incorporating [Mg{(TAP)(SBn)₈}] complex, (I), as ionophore with composition I:NaTPB:DOP:PVC in the ratio 10:2:133:200 (w/w) exhibits the best result for potentiometric sensing of Mg²⁺ ions. This gives linear potential response in the concentration range of 9.4×10⁻⁶ to 1.0×10⁻¹ M with a slope of 29.2±0.4 mV per decade of activity of Mg²⁺. Standard deviation in observed values of potentials in this concentration range, from the least square fit line, found to be 2.91 mV with 90% confidence limit lying within ±0.4 mV per decade of activity. The electrode works satisfactorily in the pH range 3.5-7.8 and shows a fast response time of 13±2 s. It shows good selectivity for Mg²⁺ over other mono-, bi- and tri-valent cations. Only K⁺ and Zn²⁺ cause slight interference if present at concentrations ≥1.0×10⁻⁵ M. The electrode is durable and can be used over a period of 5 months with good reproducibility (∼1% error). It has been successfully used as an indicator electrode in potentiometric titration of Mg²⁺ against EDTA as well as for the determination of Mg²⁺ in simulated mixtures.     

Connecting terminal carboxylate groups in nine-coordinate lanthanide podates: consequences on the thermodynamic,structural, electronic,and photophysical properties

The hydrolysis of terminal (t)butyl-ester groups provides the novel nonadentate podand tris[2-[N-methylcarbamoyl-(6-carboxypyridine-2)-ethyl]amine] (L13) which exists as a mixture of slowly interconverting conformers in solution. At pH = 8.0 in water, its deprotonated form [L13 - 3H](3-) reacts with Ln(ClO(4))(3) to give the poorly soluble and stable podates [Ln(L13 - 3H)] (log(beta(110)) = 6.7-7.0, Ln = La-Lu). The isolated complexes [Ln(L13 - 3H)](H(2)O)(7) (Ln = Eu, 8; Tb, 9; Lu, 10) are isostructural, and their crystal structures show Ln(III) to be nine-coordinate in a pseudotricapped trigonal prismatic site defined by the donor atoms of the three helically wrapped tridentate binding units of L13. The Ln-O(carboxamide) bonds are only marginally longer than the Ln-O(carboxylate) bonds in [Ln(L13 - 3H)], thus producing a regular triple helix around Ln(III) which reverses its screw direction within the covalent Me-TREN tripod. High-resolution emission spectroscopy demonstrates that (i) the replacement of terminal carboxamides with carboxylates induces only minor electronic changes for the metallic site, (ii) the solid-state structure is maintained in water, and (iii) the metal in the podate is efficiently protected from interactions with solvent molecules. The absolute quantum yields obtained for [Eu(L13 - 3H)] (Phi(Eu)(tot)= 1.8 x 10(-3)) and [Tb(L13 - 3H)] (Phi(Eu)(tot)= 8.9 x 10(-3)) in water remain modest and strongly contrast with that obtained for the lanthanide luminescence step (Phi(Eu) = 0.28). Detailed photophysical studies assign this discrepancy to the small energy gap between the ligand-centered singlet ((1)pi pi*) and triplet ((3)pi pi*) states which limits the efficiency of the intersystem crossing process. Theoretical TDDFT calculations suggest that the connection of a carboxylate group to the central pyridine ring prevents the sizable stabilization of the triplet state required for an efficient sensitization process. The thermodynamic and electronic origins of the advantages (stability, lanthanide quantum yield) and drawbacks (solubility, sensitization) brought by the "carboxylate effect" in lanthanide complexes are evaluated for programming predetermined properties in functional devices.     

Building addressable libraries: the use of electrochemistry for generating reactive Pd(II) reagents at preselected sites on a chip

A Pd(II) reagent has been generated at preselected sites on an electrochemically addressable chip. The reagent was used to effect the Wacker oxidation of an olefin substrate bound to the chip near the electrode. The use of ethyl vinyl ether in the solution above the chip effectively kept the Pd(II) reagent generated at the preselected electrode from migrating to neighboring electrodes and initiating Wacker oxidations at unwanted sites on the chip.     

First-row transition-metal complexes based on a carboxylate polychlorotriphenylmethyl radical: trends in metal-radical exchange interactions

We report the synthesis, crystal structures, and magnetic properties of a series of mononuclear, metal-radical complexes with first-row transition-metal ions using a new class of radical-based ligands, the polychlorinated triphenylmethyl (PTM) radicals. Crystal structures of three new PTM-based complexes of general formula M(PTMMC)2(py)4-x(H2O)x [PTMMC = PTM radical functionalized at the para position with one carboxylic group; M = Zn(II), x = 2 (1); M = Ni(II), x = 1 (2); M = Co(II), x = 1 (3)] show similar molecular structures in which mononuclear complexes are formed by an octahedral metal ion coordinated by two monodentated PTMMC units. From a magnetic point of view, these similar configurations describe a quasilinear, trimeric magnetic model (PTMMC-M(II)-PTMMC), in which the metal [Ni(II) or Co(II)]-radical magnetic-exchange coupling constants have been determined for the first time. In all of these complexes, the temperature dependence of the magnetic susceptibility reveals moderate antiferromagnetic-exchange coupling constants between the PTMMC radicals and Ni(II) (2J/kB = -47.1 K) and Co(II) ions (2J/kB = -15.2 K) based on the exchange Hamiltonian H = -2JSM(Srad1 + Srad2).