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吡咯-咪唑聚酰胺是一类人工合成的能够在B-DNA小沟特异性识别碱基序列的有机小分子,并且能通过细胞膜进入细胞,调控基因的表达。它主要由五元杂环化合物N-甲基吡咯(Py)、N-甲基咪唑(Im)、N-甲基-3-羟基吡咯(Hp)芳香氨基酸及脂肪链氨基酸组成。在这种小分子对生物大分子识别事件中, 脂肪链作为构建聚酰胺及其结合物的一部分, 在聚酰胺特异性识别DNA、延长DNA识别序列、连接分子荧光标记、对DNA指定位点的烷基化及基因调控等方面都起着非常重要的作用。本文阐述了脂肪链在上述诸方面应用的研究进展,并简要地分析了存在的问题和应用前景。 相似文献
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将具有DNA选择性识别的小分子与具有DNA切割活性的小分子缀合,合成对DNA具有定点切割效果的试剂是化学生物学研究领域具有挑战性的研究之一,它为化学、药学和生物学在生命科学中的相互渗透开辟了又一个广阔的空间.设计了具有切割系统和识别系统的定点切割试剂,识别系统由寡聚酰胺组成,含有N-甲基吡咯的寡聚酰胺能够穿透细胞膜与特定的碱基序列高亲和力地结合,并控制基因表达,是一类十分重要的化学物质;切割系统由大环多胺和它的金属配合物构成,大环多胺的金属配合物可作为仿酶催化剂.化合物1的锌配合物对pBR322DNA的切割见下图,此结果为进一步研究DNA特异识别及切割分子提供一个良好的基础. 相似文献
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本研究主要是设计并合成了3个含有4个N-甲基吡咯的聚酰胺化合物(PyPyPyPyβDp,PyPyPyPyγDp, NO2PyPyPyPyβDp),并使用ESI-MS法研究了其与DNA的相互作用. 相似文献
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在三乙胺存在下, N-苯甲酰基甲基喹啉溴化物和1,3-茚满二酮在乙醇中于室温反应,主要产物为多取代二氢吡咯[1,2-a]喹啉,次要产物为2-(1-苯甲酰基甲基)喹啉-4-亚基)-1,3-茚满二酮.在相同条件下,N-苄基喹啉溴化物和1,3-茚满二酮在乙醇中于室温反应,主要产物则为2-(1-苯甲酰基甲基)喹啉-4-亚基)-1,3-茚满二酮.另一方面, N-苯甲酰基甲基和N-乙氧羰基甲基以及N-(对硝基苄基)喹啉溴化物和芳香醛,1,3-茚满二酮的三组分反应,在三乙胺存在下在乙醇中高效地生成螺[茚满-2,3’-吡咯[1,2-a]喹啉]衍生物,反应具有很好的非对映选择性. 相似文献
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对1,2-二甲基咪唑啉的合成进行了详细研究. 以甲胺水溶液和2-溴乙胺氢溴酸盐(1)为原料进行反应, 在两种原料物质的量之比为5∶1, 缓缓回流12 h的条件下, 得到N-甲基乙二胺(2), N-甲基乙二胺经过乙酸化得到N-甲基-N,N′-二乙酰基乙二胺(3), 然后, N-甲基-N,N′-二乙酰基乙二胺和氧化钙在高温下关环得到1,2-二甲基咪唑啉(4). 并对所得到的产物1,2-二甲基咪唑啉经元素分析, 1H NMR, IR和GC-MS得到了表征. 相似文献
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《有机化学》2016,(5)
以N-甲基咪唑、1,2-二甲基咪唑和2-氯乙醇为原料,经季铵化、硝化和复分解反应,合成了一系列咪唑类含能离子液体.通过紫外可见光谱、红外光谱、质谱、核磁共振和元素分析等对结构进行了表征.研究了其在常用有机溶剂中的溶解性,结果表明所合成的咪唑类含能离子液体在极性溶剂中具有良好的溶解性.采用热重分析法和差示扫描量热法研究了其热性能,结果表明所合成的含能离子液体具有良好的热稳定性,其中N-硝酰氧乙基咪唑硝酸盐的分解温度均在160℃左右,而N-羟乙基咪唑离子盐的分解温度均超过了190℃.差示扫描量热技术(DSC)实验表明,1-(2-硝酰氧乙基)-3-甲基咪唑硝酸盐和N-羟乙基咪唑类离子盐在二次升温过程中均发生了玻璃化转变,表现出了离子液体的特有性质.采用Kamlet-Jacobs方程估算了合成的含能离子液体的爆速和爆压等爆轰参数. 相似文献
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Sequence‐Specific DNA Recognition by Cyclic Pyrrole–Imidazole Cysteine‐Derived Polyamide Dimers 下载免费PDF全文
Makoto Yamamoto Dr. Toshikazu Bando Hironobu Morinaga Yusuke Kawamoto Kaori Hashiya Prof. Dr. Hiroshi Sugiyama 《Chemistry (Weinheim an der Bergstrasse, Germany)》2014,20(3):752-759
Pyrrole–imidazole (PI) polyamides bind to the minor groove of the DNA duplex in a sequence‐specific manner and thus have the potential to regulate gene expression. To date, various types of PI polyamides have been designed as sequence‐specific DNA binding ligands. One of these, cysteine cyclic PI polyamides containing two β‐alanine molecules, were designed to recognize a 7 bp DNA sequence with high binding affinity. In this study, an efficient cyclization reaction between a cysteine and a chloroacetyl residue was used for dimerization in the synthesis of a unit that recognizes symmetrical DNA sequences. To evaluate specific DNA binding properties, dimeric PI polyamide binding was measured by using a surface plasmon resonance (SPR) method. Extending this molecular design, we synthesized a large dimeric PI polyamide that can recognize a 14 bp region in duplex DNA. 相似文献
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[structure: see text]. Polyamides containing N-methylimidazole (Im) and N-methylpyrrole (Py) amino acids are synthetic ligands that have an affinity and specificity for DNA comparable to those of many naturally occurring DNA binding proteins. A machine-assisted Fmoc solid phase synthesis of polyamides has been optimized to afford high stepwise coupling yields (>99%). Two monomer building blocks, Fmoc-Py acid and Fmoc-Im acid, were prepared in multigram scale. Cleavage by aminolysis followed by HPLC purification affords up to 200 mg quantities of polyamide with purities and yields greater than or equal to those reported using Boc chemistry. A broader set of reaction conditions will increase the number and complexity of minor groove binding polyamides which may be prepared and help ensure compatibility with many commercially available peptide synthesizers. 相似文献
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Briehn CA Weyermann P Dervan PB 《Chemistry (Weinheim an der Bergstrasse, Germany)》2003,9(9):2110-2122
Boc-protected benzimidazole-pyrrole, benzimidazole-imidazole, and benzimidazole-methoxypyrrole amino acids were synthesized and incorporated into DNA binding polyamides, comprised of N-methyl pyrrole and N-methyl imidazole amino acids, by means of solid-phase synthesis on an oxime resin. These hairpin polyamides were designed to determine the DNA recognition profile of a side-by-side benzimidazole/imidazole pair for the designated six base pair recognition sequence. Equilibrium association constants of the polyamide-DNA complexes were determined at two of the six base pair positions of the recognition sequence by quantitative DNase I footprinting titrations on DNA fragments each containing matched and single base pair mismatched binding sites. The results indicate that the benzimidazole-heterocycle building blocks can replace pyrrole-pyrrole, pyrrole-imidazole, and pyrrole-hydroxypyrrole constructs while retaining relative site specifities and subnanomolar match site affinities. The benzimidazole-containing hairpin polyamides represent a novel class of DNA binding ligands featuring tunable target recognition sequences combined with the favorable properties of the benzimidazole type DNA minor groove binders. 相似文献
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Electrospray ionization mass spectrometry was utilized to investigate the noncovalent complexes between novel polyamides and DNA containing the TCCT sequence. We analyzed the noncovalent binding of the polyamides with the DNA and assessed their relative affinities and stoichiometry. The results confirm that hairpin polyamides have higher binding affinities than three-ring polyamides. The hairpin polyamide (PyPyPyPygammaPyImImPybetaDp) has the highest affinity, and the beta-linked polyamide (PyPyPybetaImImImbetaDp) shows a dominant 1:2 binding stoichiometry. Two groups of competition experiments were undertaken to compare the binding affinities of the duplex DNA with different polyamides directly. The affinity scale thus obtained for the group-1 polyamides is PyPyPyPygammaPyImImPybetaDp > PyPyPybetaImImImbetaDp approximately PyPyPygammaImImImbetaDp > PyPyPybetaDp > PyImImbetaDp approximately ImImPybetaDp, and the order for the group-2 polyamides is PyPyPygammaImImImbetaDp > PyPyPygammaImImImbetaOEt > PyPyPygammaImImImbetaCOOH. 相似文献
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Hairpin pyrrole-imidazole polyamides are synthetic ligands that bind in the minor groove of DNA with affinities and specificities comparable to those of DNA binding proteins. Three polyamide-camptothecin conjugates 1-3 with linkers varying in length between 7, 13, and 18 atoms were synthesized to trap the enzyme Topoisomerase I and induce cleavage at predetermined DNA sites. One of these, polyamide-camptothecin conjugate 3 at nanomolar concentration (50 nM) in the presence of Topo I (37 degrees C), induces DNA cleavage between three and four base pairs from the polyamide binding site in high yield (77%). 相似文献
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Eight novel polyamides containing N-methylpyrrole were designed to target the sequence (5'-CTGCATATAAGCAG-3'/5'-CTGCTTATATGCAG-3') of the TATA box element of the HIV-1 promoter DNA. The non-covalent complexes of the promoter DNA and the polyamides were investigated by electrospray ionization (ESI) mass spectrometry, which provided strong evidence for the binding of the novel polyamides to the sequence of the TATA box element. It also revealed that polyamide 2 (PyPyPyPybetaDp), a potent binder of HIV-1 promoter DNA and a lead molecule for the design of new anti-HIV-1 drugs, had the highest binding affinity with the TATA box element DNA among these polyamides by examining the stoichiometry and the selectivity. 相似文献
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Khalid Aman Dr. Giacomo Padroni Dr. John A. Parkinson Thomas Welte Prof. Glenn A. Burley 《Chemistry (Weinheim an der Bergstrasse, Germany)》2019,25(11):2757-2763
A combined structural and quantitative biophysical profile of the DNA binding affinity, kinetics and sequence-selectivity of hairpin polyamide analogues is described. DNA duplexes containing either target polyamide binding sites or mismatch sequences are immobilized on a microelectrode surface. Quantitation of the DNA binding profile of polyamides containing N-terminal 1-alkylimidazole (Im) units exhibit picomolar binding affinities for their target sequences, whereas 5-alkylthiazole (Nt) units are an order of magnitude lower (low nanomolar). Comparative NMR structural analyses of the polyamide series shows that the steric bulk distal to the DNA-binding face of the hairpin iPr-Nt polyamide plays an influential role in the allosteric modulation of the overall DNA duplex structure. This combined kinetic and structural study provides a foundation to develop next-generation hairpin designs where the DNA-binding profile of polyamides is reconciled with their physicochemical properties. 相似文献